BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0045.p (481 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776935.1| response regulator containing a CheY-like re... 968 0.0 ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans... 404 e-110 ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S1... 398 e-108 ref|YP_261798.1| diguanylate cyclase (GGDEF) domain-containing p... 395 e-108 ref|ZP_06190751.1| diguanylate cyclase [Serratia odorifera 4Rx13... 395 e-107 ref|YP_004501568.1| diguanylate cyclase [Serratia sp. AS12] >gi|... 391 e-106 ref|YP_004752514.1| putative GGDEF domain-containing protein [Co... 382 e-104 ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimon... 379 e-103 ref|ZP_06639766.1| diguanylate cyclase [Serratia odorifera DSM 4... 365 9e-99 ref|ZP_08039018.1| putative truncated diguanylate cyclase [Serra... 360 2e-97 >ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] gb|ADJ65027.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 968 bits (2502), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/481 (99%), Positives = 479/481 (99%) Query: 1 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLS 60 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLS Sbjct: 45 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLS 104 Query: 61 SEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRST 120 SEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRST Sbjct: 105 SEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRST 164 Query: 121 GRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMP 180 GRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMP Sbjct: 165 GRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMP 224 Query: 181 FDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLARE 240 FDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLARE Sbjct: 225 FDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLARE 284 Query: 241 EALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLE 300 EALADWKQQTFVYGAAVLLLLAIIGVFGWRL+GQIELRLRAEDRALQAMGELQMANHRLE Sbjct: 285 EALADWKQQTFVYGAAVLLLLAIIGVFGWRLVGQIELRLRAEDRALQAMGELQMANHRLE 344 Query: 301 MLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDEC 360 MLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDEC Sbjct: 345 MLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDEC 404 Query: 361 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGN 420 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLP TDAEGACAVAEKLRAGIQALELPHRGN Sbjct: 405 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLPGTDAEGACAVAEKLRAGIQALELPHRGN 464 Query: 421 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPMKTAPSDAV 480 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPMKTAPS AV Sbjct: 465 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLAAPMKTAPSGAV 524 Query: 481 S 481 S Sbjct: 525 S 525 >ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans 568] gb|ABV42169.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 516 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 205/465 (44%), Positives = 298/465 (64%), Gaps = 3/465 (0%) Query: 3 LENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSSE 62 L++ + S N+A+ALA+HA D TD L D+S+RI G+A +L+ L +++ Sbjct: 51 LQSAENESANLARALAQHADDTFMQTDSTLSDLSERIQVDGLARPQLLRLQKVMQTQVGN 110 Query: 63 MPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTGR 122 +PQL GL+V+D G ++TSS + ANN+DR+YF +H +H+ ++GK + SRSTG Sbjct: 111 LPQLHGLFVYDAQGNWVVTSSGRFVQNANNADREYFKYHLEHNSNAVYIGKVVRSRSTGD 170 Query: 123 WIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFD 182 IIP+SRR NHPDGSFAGV+LATL IN+F Q Y T + S+ LLL DGT+L R P+ Sbjct: 171 LIIPVSRRFNHPDGSFAGVVLATLYINYFRQFYDTFALNSDASLNLLLADGTILYRRPYS 230 Query: 183 PGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEA 242 I ++ S+G LF E LPHS FG + S D +R Y V +YPLV+ L++++ Sbjct: 231 LAAIGKNISEGVLFREILPHSEFGNATITSRYDKVERIYGYSRVTRYPLVIAAGLSKKDV 290 Query: 243 LADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLEML 302 LADW+ + ++ LLAI+ G L+ QI +R E ++ +L N LE L Sbjct: 291 LADWRNDSGLFALGGATLLAILLAMGMVLMRQINHSVRTEAELMRTRDQLTSINRTLEEL 350 Query: 303 AHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECLR 362 A DGLTGLANRR D L+ E RA R+ ++AL+M+D+D+FKQYND+YGH AGD+CL+ Sbjct: 351 ALLDGLTGLANRRQFDIALKNELMRASRNYRSVALLMLDIDYFKQYNDIYGHVAGDQCLQ 410 Query: 363 RVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGNPV 422 ++ +LK R D+ ARYGGEEMA++LP TDA+GA AE++ ++ L++PH GNP Sbjct: 411 QIGQMLKGMASRSNDIMARYGGEEMAIILPDTDAQGALIFAERVIEAVRELKIPHDGNPH 470 Query: 423 GVVTVSVGVCALELLPSAARSV-QALLGAADAALYEAKHEGRNQV 466 GV+T+S+G+ A +P + + AD+ALY+AK +G+N++ Sbjct: 471 GVITISIGIYA--KVPHMYNDTPMSFINQADSALYQAKAQGKNRI 513 >ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 512 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 198/466 (42%), Positives = 298/466 (63%), Gaps = 1/466 (0%) Query: 2 QLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSS 61 QL+ + N+++A+A+ A D ++ D +L+ M +R++ G + + L +L + Sbjct: 37 QLQQMNVATSNLSRAMAQQADDTIKKADTVLVGMVERVEHDGTDPSDVARLRQLLALRVA 96 Query: 62 EMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTG 121 E+PQLDGL+++D+ G + S NN+DR+YF +HR H + GPH+G + SR++G Sbjct: 97 ELPQLDGLHIYDQDGNWIANSRPTRPENLNNADREYFAFHRTHAERGPHIGIPVQSRTSG 156 Query: 122 RWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPF 181 R ++P+SRR+NH DGSFAGV LAT+ ++ F++ Y +++IG+ G++AL+L +GT++TR P+ Sbjct: 157 RLLVPVSRRINHADGSFAGVALATIHVDFFSRFYDSLDIGQAGAVALVLENGTMMTRRPY 216 Query: 182 DPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREE 241 P + R+ + +LF H P G + S D R S++ +D YPL + L+++E Sbjct: 217 SPDMVGRNMLETQLFRSYAAHGPVGTAYIKSAQDGVTRLNSFRRLDNYPLFVSAALSKDE 276 Query: 242 ALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLEM 301 LA+W + T + V+LL I+G GWRL+ Q +L+ R E QA L+ N L Sbjct: 277 ILANWWRDTLWHSGGVVLLSLIVGFIGWRLVRQFQLQTRTEAELRQARDALETLNKTLNT 336 Query: 302 LAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECL 361 LA +DGLTGLANRR D L++E+ RA R+ + LALIM+DVD FKQYND+YGH AGDECL Sbjct: 337 LAMEDGLTGLANRRQFDVALDSEYSRAARNASTLALIMMDVDCFKQYNDIYGHAAGDECL 396 Query: 362 RRVA-GVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGN 420 + + + + RRPGDLAARYGGEE+A+LLP TD GA +AE++R+ ++ L++ H G Sbjct: 397 QTIGRTIARVASRRPGDLAARYGGEELAVLLPNTDVAGAVMLAERIRSAVRELKIEHAGT 456 Query: 421 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQV 466 G VT+S GV AL + L+ +AD ALY AK GRN+V Sbjct: 457 ADGFVTLSAGVDALSPQAGIGGQPKELIRSADKALYAAKSGGRNRV 502 >ref|YP_261798.1| diguanylate cyclase (GGDEF) domain-containing protein [Pseudomonas fluorescens Pf-5] gb|AAY93948.1| diguanylate cyclase (GGDEF) domain protein [Pseudomonas fluorescens Pf-5] Length = 527 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 205/468 (43%), Positives = 303/468 (64%), Gaps = 2/468 (0%) Query: 2 QLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSS 61 +L++ N+A+ L+ A+D ++ D +L + DRI++ G+ +L L +L + Sbjct: 61 RLQDKEVAMANLAQTLSSQAHDSIKQADTVLFSLVDRIETEGMDADQLHLLKRLLSAQRN 120 Query: 62 EMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTG 121 E+ QL GL+++D+ G ++ S+ ANNSD +YFI+HRD D GPHVG ++ SRSTG Sbjct: 121 ELSQLHGLFIYDQDGAWIVASNGILPPNANNSDSEYFIYHRDRPDRGPHVGPSIKSRSTG 180 Query: 122 RWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPF 181 W++P+SRR+N+PDGSFAGV LAT+ ++HF +LY +++IG G I L+ + ++ R PF Sbjct: 181 EWVLPVSRRINNPDGSFAGVALATIYLDHFLKLYNSIDIGNNGVINLISSEAKIVLRRPF 240 Query: 182 DPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREE 241 + I + ++G LF + LP PFG V S LD +R + Y+ V+ YPL++ + +EE Sbjct: 241 NEAVIGTNVAEGPLFTQLLPKGPFGTATVTSYLDGVERVVGYRRVNDYPLIVFSAVNKEE 300 Query: 242 ALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLEM 301 LA W+Q+T + A V LL+ ++G G+R I ++ + R ++ L A +L N LE+ Sbjct: 301 VLASWRQETVMSTAIVFLLMTVLGGIGYRFIRLMKKQGRIQNELLGAQDKLMEVNRTLEL 360 Query: 302 LAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECL 361 LA +D LTGLANRR D +TE RA+R LAL+MIDVD FK++ND YGH GDECL Sbjct: 361 LALEDALTGLANRRQFDLFTQTEMGRAKRGQRTLALLMIDVDHFKRFNDRYGHLVGDECL 420 Query: 362 RRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGNP 421 RR++ +++E RRPGDLAAR+GGEE A++LP TD GA VAEK+R + E+ H+ + Sbjct: 421 RRISAIIRENIRRPGDLAARFGGEEFAVVLPATDYVGAFIVAEKIRKAVLRAEIEHKDSG 480 Query: 422 VGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLA 469 + +VTVS+GV A PS ++ L+GAAD ALY AK GRN +A Sbjct: 481 IELVTVSIGVGACS--PSVEDTLDGLIGAADEALYVAKTSGRNMSVIA 526 >ref|ZP_06190751.1| diguanylate cyclase [Serratia odorifera 4Rx13] gb|EFA16257.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 520 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/458 (44%), Positives = 300/458 (65%), Gaps = 3/458 (0%) Query: 10 SGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSSEMPQLDGL 69 S N+A++LA+HA D D L D+++RI + G+ + + L +++ +PQL GL Sbjct: 58 SANLARSLAQHADDTFLQVDSTLSDLTERIQTDGLGQPQQLRLQKLMQGQVGNLPQLHGL 117 Query: 70 YVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTGRWIIPMSR 129 +++D HG ++TSS + ANN+DR+YF +H +H+ ++GK + SRSTG IIP+SR Sbjct: 118 FIYDSHGSWIVTSSGRFVQGANNADREYFKYHLEHNSNAIYIGKVVRSRSTGDLIIPVSR 177 Query: 130 RLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGYINRD 189 RLNHPDGSFAGV+LATL +++F Q Y T + +++LLL DGT+L R P+ I ++ Sbjct: 178 RLNHPDGSFAGVVLATLYVDYFRQFYDTFALNSDAALSLLLADGTILYRRPYSAASIGKN 237 Query: 190 FSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALADWKQQ 249 SQG LF E LPHS FG + S D +R Y V++YPLV+ L++E+ALADW+ Sbjct: 238 ISQGVLFREILPHSEFGNATITSLYDKVERIYGYSRVNRYPLVITAGLSKEDALADWRND 297 Query: 250 TFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLEMLAHQDGLT 309 + ++ A LLAI+ G L+ QI +R E ++ +L N RLE LA DGLT Sbjct: 298 SGLFVAGGATLLAILLALGLVLMRQINHSVRTEAELMRTRDQLTSINLRLEELALLDGLT 357 Query: 310 GLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECLRRVAGVLK 369 GLANRR D L+ E RA R+ ++AL+M+D+D+FKQYND+YGH AGD+CL+++ +LK Sbjct: 358 GLANRRQFDIALKNELARAARNYRSVALLMLDIDYFKQYNDIYGHVAGDQCLQQIGQMLK 417 Query: 370 ERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGNPVGVVTVSV 429 R D+ ARYGGEEM+++LP TDA+GA A+++ ++ L++PH+GNP GV+T+S+ Sbjct: 418 GLASRSNDIMARYGGEEMSIILPDTDAQGALIFADRVMQAVRELKIPHQGNPHGVITLSI 477 Query: 430 GVCALELLPSAARSVQ-ALLGAADAALYEAKHEGRNQV 466 G+CA +P + AD+ALY+AK EG+N++ Sbjct: 478 GICA--KVPHMYNDTPIGFINMADSALYQAKKEGKNRI 513 >ref|YP_004501568.1| diguanylate cyclase [Serratia sp. AS12] ref|YP_004506520.1| diguanylate cyclase [Serratia sp. AS9] gb|AEF46259.1| diguanylate cyclase [Serratia sp. AS9] gb|AEF51211.1| diguanylate cyclase [Serratia sp. AS12] gb|AEG28919.1| diguanylate cyclase [Serratia sp. AS13] Length = 520 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/458 (43%), Positives = 298/458 (65%), Gaps = 3/458 (0%) Query: 10 SGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSSEMPQLDGL 69 S N+A++LA+HA D D L D+++RI + G+ + + L +++ +PQL GL Sbjct: 58 SANLARSLAQHADDTFLQVDSTLSDLTERIQTDGLGQPQQLRLQKLMQGQVGNLPQLHGL 117 Query: 70 YVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTGRWIIPMSR 129 +++D HG ++TSS + ANN+DR+YF +H +H+ ++GK + SRSTG IIP+SR Sbjct: 118 FIYDAHGSWIVTSSGKFVQGANNADREYFKYHLEHNSNAIYIGKVVRSRSTGDLIIPVSR 177 Query: 130 RLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGYINRD 189 RLNHPDGSFAGV+LATL +++F Q Y T + +++LLL DGT+L R P+ I ++ Sbjct: 178 RLNHPDGSFAGVVLATLYVDYFRQFYDTFALNSDAALSLLLADGTILYRRPYSAASIGKN 237 Query: 190 FSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALADWKQQ 249 SQG LF E LPHS FG + S D +R Y V +YPLV+ L++E+ALADW+ Sbjct: 238 ISQGVLFREILPHSEFGNATITSLYDKVERIYGYSRVSRYPLVITAGLSKEDALADWRND 297 Query: 250 TFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLEMLAHQDGLT 309 + ++ A LLAI+ G L+ QI +R E ++ +L N RLE LA DGLT Sbjct: 298 SGLFVAGGATLLAILLALGLVLMRQINHSVRTEAELMRTRDQLTSINLRLEELALLDGLT 357 Query: 310 GLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECLRRVAGVLK 369 GLANRR D L+ E RA R+ ++AL+M+D+D+FKQ+ND+YGH AGD+CL+++ +LK Sbjct: 358 GLANRRQFDIALKNELARAARNYRSVALLMLDIDYFKQFNDIYGHVAGDQCLQQIGQMLK 417 Query: 370 ERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGNPVGVVTVSV 429 R D+ ARYGGEEM+++LP TDA+GA AE++ ++ L++PH+GNP V+T+S+ Sbjct: 418 GLASRSNDIMARYGGEEMSIILPDTDAQGALIFAERVMQAVRELKIPHQGNPHDVITLSI 477 Query: 430 GVCALELLPSAARSVQ-ALLGAADAALYEAKHEGRNQV 466 G+CA +P + AD+ALY+AK EG+N++ Sbjct: 478 GICA--KVPHMYNDTPIGFINMADSALYQAKKEGKNRI 513 >ref|YP_004752514.1| putative GGDEF domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61691.1| putative GGDEF domain protein [Collimonas fungivorans Ter331] Length = 521 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/467 (44%), Positives = 295/467 (63%), Gaps = 3/467 (0%) Query: 1 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLS 60 ++L + N+A+AL++HA D ++ D +L+ + +R++ G A L L +L Sbjct: 50 IELHETEIATSNLARALSQHADDTIKEADTVLVGLVERLEVDGTGSASLERLHALLIHHI 109 Query: 61 SEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRST 120 +E+PQL+ L ++DE G L + P+ NNSDR YF +HR H GP++G + SRST Sbjct: 110 AELPQLNDLSIYDETGLWLANARTGPVPLVNNSDRQYFRYHRSHPGRGPYIGPPVRSRST 169 Query: 121 GRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMP 180 G WI+ +SRR NH DGSFAG++L T++I++F + Y + +IG+ GSI L L DGT+L R P Sbjct: 170 GAWIVTVSRRYNHADGSFAGLVLGTINIDYFKKYYDSFDIGRAGSIFLSLNDGTMLVRRP 229 Query: 181 FDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLARE 240 I ++ S ++ + S G + S D +R ++Y+ + +YPL + V ++ Sbjct: 230 MMDDTIGKNLSNYPIYRDYASRSAVGTAIMKSDQDGIERLIAYRHLQQYPLFVTVARSKN 289 Query: 241 EALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLE 300 E LA+W+ T+++ +LL +G+ GWRLI QI LRL AE+ L L+M N LE Sbjct: 290 EVLAEWRADTYLHLFGAMLLTLALGLLGWRLIHQIRLRLLAENDLLCVQESLRMLNRHLE 349 Query: 301 MLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDEC 360 LA QD LTGLANRR D L EF RA R+ +LAL+MIDVD+FKQYND+YGH AGDEC Sbjct: 350 QLALQDSLTGLANRRQFDNALRDEFSRAMRTENSLALVMIDVDYFKQYNDIYGHLAGDEC 409 Query: 361 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGN 420 LR+++ ++K + RPGDLAARYGGEE+ +LLP T+ GA AVAEK+R I L + H + Sbjct: 410 LRQISEIVKASKNRPGDLAARYGGEELVVLLPDTNLAGAVAVAEKIRVAICNLHIEHPSS 469 Query: 421 PVGVVTVSVGVCALELLPSAARSVQ-ALLGAADAALYEAKHEGRNQV 466 G+VTVS GV A +P ++ L+ AAD ALY AK GRN+V Sbjct: 470 TFGLVTVSAGVDA--FVPVRDDNIPFELIQAADRALYAAKSAGRNRV 514 >ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 519 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/465 (43%), Positives = 287/465 (61%), Gaps = 3/465 (0%) Query: 2 QLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSS 61 ++ + + N+AKALA+HA D + D LL+ M + ++ +L + LR+ + Sbjct: 46 KIRETETATSNMAKALAQHAEDTVGGIDNLLVSMEEMLERDSWNPLQLERMNQFLRQRVT 105 Query: 62 EMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRSTG 121 ++P L GL+V+DEHG+ + S NN+DR+YFI+HR H D GPH+G + SRSTG Sbjct: 106 DLPLLHGLFVYDEHGQWVANSQETLRTDLNNADREYFIFHRTHTDSGPHLGPPIRSRSTG 165 Query: 122 RWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPF 181 WII +SRRL H DG+FAGV+LAT+++ +F+ Y+ +IGK G+I L GTLL R PF Sbjct: 166 DWIITVSRRLEHADGNFAGVVLATINMQYFSAYYKDFDIGKAGAIVLTTDSGTLLVRRPF 225 Query: 182 DPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREE 241 D I D S G ++ G + + +D +R SY+ +D+YPL++ V + +E Sbjct: 226 DEAVIGGDISNGPVYQFYKRQGSSGTAILTANIDRTERIYSYRHLDRYPLLIAVAQSTDE 285 Query: 242 ALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLEM 301 L W+ T + ++L ++ + G RL+ QI +R RA+ A +L+ +N L Sbjct: 286 VLESWRNSTMRFAFFSAMVLLLLWLLGARLVHQITVRERAQSELRTARDDLERSNGELAA 345 Query: 302 LAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDECL 361 LA D LTGLANRR D L+ EF RA R+ +LALIM+DVD FK+YND YGH GDECL Sbjct: 346 LALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHFKKYNDRYGHPQGDECL 405 Query: 362 RRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGNP 421 + ++ +LK R GDL ARYGGEE +LLP TD GA AVAE++R IQAL + H P Sbjct: 406 KEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAERVRLAIQALNMEHAETP 465 Query: 422 VGVVTVSVGVCALELLPSAAR-SVQALLGAADAALYEAKHEGRNQ 465 G+VT S+G+ A L+P + S Q L+ AAD ALY+AK +GRNQ Sbjct: 466 DGIVTASLGIAA--LIPQRQQNSPQQLVHAADQALYKAKEDGRNQ 508 >ref|ZP_06639766.1| diguanylate cyclase [Serratia odorifera DSM 4582] gb|EFE95411.1| diguanylate cyclase [Serratia odorifera DSM 4582] Length = 519 Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 197/466 (42%), Positives = 296/466 (63%), Gaps = 1/466 (0%) Query: 1 VQLENNRSYSGNVAKALARHAYDVLQATDGLLLDMSDRIDSVGIAHARLVDLMPMLRRLS 60 + L+ + S N+A++LA+HA D + D LL++++R+D G A+ L +++ Sbjct: 52 IDLKTAENTSSNLARSLAQHADDTFKQVDNNLLELTERLDHDGRGPAQRSRLHKVMQAQV 111 Query: 61 SEMPQLDGLYVFDEHGKRLLTSSAPPLAPANNSDRDYFIWHRDHDDVGPHVGKALLSRST 120 PQL G +++D G+ + TS ANNSDR YF +H+ HDD P++G+ + SR+T Sbjct: 112 ENAPQLHGSFIYDAQGRWIATSFGNVPTLANNSDRAYFQYHQTHDDDQPYIGQVIRSRTT 171 Query: 121 GRWIIPMSRRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMP 180 G +IP+SRRL +PDGSF GV+LATL +++F Q Y + S++LLL DGT+L R P Sbjct: 172 GDLVIPISRRLKNPDGSFGGVVLATLYVDYFRQFYDDFALDNDASLSLLLADGTILYRRP 231 Query: 181 FDPGYINRDFSQGRLFLEGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLARE 240 + P I ++ S G LF LPHS FG + S D +R Y V++YPLV+ L+R Sbjct: 232 YSPSSIGKNISHGILFSRILPHSTFGNATLTSRYDKVERIYGYSRVERYPLVIAAGLSRN 291 Query: 241 EALADWKQQTFVYGAAVLLLLAIIGVFGWRLIGQIELRLRAEDRALQAMGELQMANHRLE 300 +ALA W+ T ++ L+LL I+ V G LI QI ++ E ++ +L + N LE Sbjct: 292 DALAGWRSDTTLFVLGGLVLLGILLVLGLVLIRQINHSVQTEAELVRTRDQLTLMNQTLE 351 Query: 301 MLAHQDGLTGLANRRHLDTMLETEFKRAERSGAALALIMIDVDFFKQYNDLYGHQAGDEC 360 +A D LTGLANRR D L++E R+ R+ ++AL+M+D+D+FKQYND+YGH AGD C Sbjct: 352 EMALLDSLTGLANRRQFDMALKSEITRSARNARSVALLMLDIDYFKQYNDIYGHVAGDRC 411 Query: 361 LRRVAGVLKERQRRPGDLAARYGGEEMAMLLPCTDAEGACAVAEKLRAGIQALELPHRGN 420 L+++ +L+ R GD+ ARYGGEE+A++LP TD GA AVAE+L ++ L +PH G+ Sbjct: 412 LQQLGQLLQNLSTRTGDVIARYGGEELAIILPDTDNAGALAVAERLLTQVRQLHIPHSGS 471 Query: 421 PVGVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQV 466 P+G++TVS+G+CA ++ + +L+ AD ALYEAK G+N+V Sbjct: 472 PLGMITVSIGLCA-KVPQRYGDTPISLVNQADGALYEAKENGKNRV 516 >ref|ZP_08039018.1| putative truncated diguanylate cyclase [Serratia symbiotica str. Tucson] gb|EFW12484.1| putative truncated diguanylate cyclase [Serratia symbiotica str. Tucson] Length = 444 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 181/439 (41%), Positives = 277/439 (63%), Gaps = 2/439 (0%) Query: 29 DGLLLDMSDRIDSVGIAHARLVDLMPMLRRLSSEMPQLDGLYVFDEHGKRLLTSSAPPLA 88 D LLD+++R+ + +H +L+ L +++ E+PQL G+++FD G L+TSS L Sbjct: 4 DDNLLDLAERLQTDRQSHQQLLRLQRVMQTQVDELPQLQGIFIFDSQGLWLITSSDNVLK 63 Query: 89 PANNSDRDYFIWHRDHDDVGPHVGKALLSRSTGRWIIPMSRRLNHPDGSFAGVLLATLDI 148 ANN+DR+YF +H+++D ++ K + SRSTG IIP+SRR N+PDGSFAGV++A L + Sbjct: 64 NANNADREYFKYHQNYDANTLYISKVIRSRSTGDLIIPISRRFNNPDGSFAGVIMAALYL 123 Query: 149 NHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGYINRDFSQG-RLFLEGLPHSPFGY 207 ++F+Q Y + + S+ LL+ DGT+L R P+ I ++ SQ LF E LPHS FG Sbjct: 124 DYFHQFYDSFALNTDASLNLLMADGTILYRHPYALTSIGKNISQTILLFREILPHSEFGN 183 Query: 208 LEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALADWKQQTFVYGAAVLLLLAIIGVF 267 + SP D +R Y V +YPLV+ L++ + LADW+ +++ LL I+ V Sbjct: 184 ATIYSPYDKVERIYGYSRVKRYPLVITAGLSKRDVLADWRNDAYMFAMGGFSLLVILLVM 243 Query: 268 GWRLIGQIELRLRAEDRALQAMGELQMANHRLEMLAHQDGLTGLANRRHLDTMLETEFKR 327 G L+ QI+ ++ E ++ +L N LE LA D LTGLANRR D L+ E R Sbjct: 244 GLVLLRQIKHSVQTEAELMRTRDQLTTINQMLEELALIDSLTGLANRRQFDIALKNELTR 303 Query: 328 AERSGAALALIMIDVDFFKQYNDLYGHQAGDECLRRVAGVLKERQRRPGDLAARYGGEEM 387 A R+ ++AL+M+D+D+FKQYND+YGH AGD+CL+++ LK RR D+ ARYGGEEM Sbjct: 304 AARNYRSVALLMLDMDYFKQYNDIYGHVAGDQCLQQIGQTLKGLARRSNDIMARYGGEEM 363 Query: 388 AMLLPCTDAEGACAVAEKLRAGIQALELPHRGNPVGVVTVSVGVCALELLPSAARSVQAL 447 ++LP TDA+G AE++ ++ L +PH+GNP +VT+S+G+ ++ + + Sbjct: 364 GIILPDTDAQGVLFFAERIIDAVRELNIPHQGNPHDIVTISIGIYT-KVPHRYNDTPISF 422 Query: 448 LGAADAALYEAKHEGRNQV 466 + AD ALY+AK +G+N + Sbjct: 423 IDLADHALYQAKRQGKNGI 441