BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0029.p (156 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776949.1| hypothetical protein Hsero_3562 [Herbaspiril... 318 2e-85 ref|YP_004751703.1| hypothetical protein CFU_1048 [Collimonas fu... 282 1e-74 ref|ZP_08275493.1| LSU m3Psi1915 methyltransferase RlmH [Oxaloba... 277 3e-73 ref|YP_001098886.1| rRNA large subunit methyltransferase [Hermin... 273 4e-72 ref|YP_001352229.1| rRNA large subunit methyltransferase [Janthi... 271 2e-71 ref|YP_369864.1| SPOUT methyltransferase superfamily protein [Bu... 261 4e-68 ref|ZP_02909913.1| protein of unknown function DUF163 [Burkholde... 259 8e-68 ref|ZP_03572645.1| conserved hypothetical protein [Burkholderia ... 259 9e-68 ref|YP_621564.1| rRNA large subunit methyltransferase [Burkholde... 259 1e-67 ref|YP_001579167.1| rRNA large subunit methyltransferase [Burkho... 259 1e-67 >ref|YP_003776949.1| hypothetical protein Hsero_3562 [Herbaspirillum seropedicae SmR1] gb|ADJ65041.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 318 bits (815), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 154/156 (98%), Positives = 155/156 (99%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 MQL+IAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAE VMAQEREKI Sbjct: 1 MQLVIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAETVMAQEREKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL Sbjct: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA Sbjct: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 >ref|YP_004751703.1| hypothetical protein CFU_1048 [Collimonas fungivorans Ter331] gb|AEK60880.1| hypothetical protein CFU_1048 [Collimonas fungivorans Ter331] Length = 156 Score = 282 bits (721), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 130/155 (83%), Positives = 145/155 (93%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 MQL+IAAVGHKMPAWIE+GF EYAKRMPP+CRI+LKEIKPVERSGS+TAE MA ER +I Sbjct: 1 MQLIIAAVGHKMPAWIESGFGEYAKRMPPDCRIVLKEIKPVERSGSKTAETAMALERSRI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EA LPKG R++ALDERG+D TSVQLSQQL QWQ+DGRDVAF+IGGADGLDP FKAGAD+L Sbjct: 61 EAVLPKGVRIVALDERGKDLTSVQLSQQLTQWQRDGRDVAFIIGGADGLDPEFKAGADSL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 +RISS+TLPHGMVRV+LAEQLYRAWSITQNHPYHR Sbjct: 121 LRISSLTLPHGMVRVLLAEQLYRAWSITQNHPYHR 155 >ref|ZP_08275493.1| LSU m3Psi1915 methyltransferase RlmH [Oxalobacteraceae bacterium IMCC9480] gb|EGF31037.1| LSU m3Psi1915 methyltransferase RlmH [Oxalobacteraceae bacterium IMCC9480] Length = 156 Score = 277 bits (709), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 131/155 (84%), Positives = 140/155 (90%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 MQL+IAAVGHKMPAWIETGF EYAKRMPPECR+ LKEIKPVERSGS+TAE MA ER +I Sbjct: 1 MQLIIAAVGHKMPAWIETGFGEYAKRMPPECRLHLKEIKPVERSGSKTAETAMALERTRI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EA LPKG R+IALDE GRD TSVQLSQQL WQQDGRDVAF+IGGADGLDP FKA AD L Sbjct: 61 EAVLPKGTRIIALDEHGRDLTSVQLSQQLTSWQQDGRDVAFIIGGADGLDPHFKANADML 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 +RISS+TLPHGMVRV+LAEQLYRAWSITQNHPYHR Sbjct: 121 LRISSLTLPHGMVRVVLAEQLYRAWSITQNHPYHR 155 >ref|YP_001098886.1| rRNA large subunit methyltransferase [Herminiimonas arsenicoxydans] sp|A4G2M2.1|RLMH_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH emb|CAL60759.1| putative methyltransferase [Herminiimonas arsenicoxydans] Length = 156 Score = 273 bits (699), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 131/155 (84%), Positives = 139/155 (89%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 MQL+IAAVGHKMPAWIE GF EYAKRMPP+CRI LKEIKPVERSGS+TAE MA ER KI Sbjct: 1 MQLVIAAVGHKMPAWIENGFGEYAKRMPPDCRIHLKEIKPVERSGSKTAETAMALERAKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAA+PKGAR+IALDE G+D TSVQL+Q L QWQQDGRDV FVIGGADGLDP FK AD L Sbjct: 61 EAAVPKGARIIALDEHGKDVTSVQLAQLLTQWQQDGRDVTFVIGGADGLDPDFKKKADML 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 IRISS+TLPHGMVRVMLAEQLYRAWSITQNHPYHR Sbjct: 121 IRISSLTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 >ref|YP_001352229.1| rRNA large subunit methyltransferase [Janthinobacterium sp. Marseille] sp|A6SVD2.1|RLMH_JANMA RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABR89862.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 156 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 129/155 (83%), Positives = 139/155 (89%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 MQL+IAAVGHKMPAWIE+GF EYAKRMP +CR+ LKEIKPVERSGS+TAE MA ER KI Sbjct: 1 MQLVIAAVGHKMPAWIESGFGEYAKRMPADCRVHLKEIKPVERSGSKTAETAMALERAKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAALPKGAR+IALDE G+D TSVQL+Q L QWQQDGRDVAF+IGGADGLD FK AD L Sbjct: 61 EAALPKGARIIALDEHGKDLTSVQLAQLLTQWQQDGRDVAFIIGGADGLDAEFKKNADML 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHR 155 IRISSMTLPHGMVRV+LAEQLYRAWSITQNHPYHR Sbjct: 121 IRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHR 155 >ref|YP_369864.1| SPOUT methyltransferase superfamily protein [Burkholderia sp. 383] sp|Q39E96.1|RLMH_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABB09220.1| protein of unknown function DUF163 [Burkholderia sp. 383] Length = 156 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 125/156 (80%), Positives = 137/156 (87%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 M+L I AVGHKMP WI +GF EY KRMPPE RI L+EIKP RSG R+AE VMA ER+KI Sbjct: 1 MKLFILAVGHKMPGWIASGFDEYTKRMPPELRIELREIKPELRSGGRSAESVMAAERQKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAALPKGAR++ALDERGRDWT++QL+Q L WQQDGRDVAFVIGGADGLDP KA ADTL Sbjct: 61 EAALPKGARLVALDERGRDWTTMQLAQALPGWQQDGRDVAFVIGGADGLDPELKARADTL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 +RISSMTLPHGMVRV+LAEQLYRAWSITQNHPYHRA Sbjct: 121 LRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHRA 156 >ref|ZP_02909913.1| protein of unknown function DUF163 [Burkholderia ambifaria MEX-5] ref|YP_001808911.1| rRNA large subunit methyltransferase [Burkholderia ambifaria MC40-6] sp|B1YU55.1|RLMH_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|EDT38946.1| protein of unknown function DUF163 [Burkholderia ambifaria MEX-5] gb|ACB64695.1| protein of unknown function DUF163 [Burkholderia ambifaria MC40-6] Length = 156 Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 124/156 (79%), Positives = 136/156 (87%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 M+L I AVGHKMP WI +GF EY KRMPPE RI L+EIKP RSG R+AE VMA ER+KI Sbjct: 1 MKLFILAVGHKMPGWIASGFDEYTKRMPPELRIELREIKPELRSGGRSAESVMAAERQKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAALPKGAR++ALDERGRDWT++QL+Q L WQQDGRDVAFVIGGADGLDP KA AD L Sbjct: 61 EAALPKGARIVALDERGRDWTTMQLAQALPAWQQDGRDVAFVIGGADGLDPELKARADVL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 +RISSMTLPHGMVRV+LAEQLYRAWSITQNHPYHRA Sbjct: 121 LRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHRA 156 >ref|ZP_03572645.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] ref|ZP_03578514.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE06769.1| conserved hypothetical protein [Burkholderia multivorans CGD2] gb|EEE13289.1| conserved hypothetical protein [Burkholderia multivorans CGD2M] Length = 156 Score = 259 bits (662), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 124/156 (79%), Positives = 137/156 (87%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 M+L I AVGHKMP WI +GF EYAKRMPPE RI L+EIKP RSG R+AE VMA ER+KI Sbjct: 1 MKLFILAVGHKMPGWIASGFDEYAKRMPPELRIELREIKPELRSGGRSAESVMAAERQKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 +AALPKGAR++ALDERGRDWT++QL+Q L WQQDGRDVAFVIGGADGLDP KA AD L Sbjct: 61 DAALPKGARIVALDERGRDWTTMQLAQALPGWQQDGRDVAFVIGGADGLDPDLKARADLL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 +RISSMTLPHGMVRV+LAEQLYRAWSITQNHPYHRA Sbjct: 121 LRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHRA 156 >ref|YP_621564.1| rRNA large subunit methyltransferase [Burkholderia cenocepacia AU 1054] ref|YP_835943.1| rRNA large subunit methyltransferase [Burkholderia cenocepacia HI2424] ref|YP_001765605.1| rRNA large subunit methyltransferase [Burkholderia cenocepacia MC0-3] ref|ZP_04940935.1| hypothetical protein BCPG_02418 [Burkholderia cenocepacia PC184] sp|Q1BUW4.1|RLMH_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH sp|A0K973.1|RLMH_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH sp|B1JW46.1|RLMH_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABF76591.1| protein of unknown function DUF163 [Burkholderia cenocepacia AU 1054] gb|ABK09050.1| protein of unknown function DUF163 [Burkholderia cenocepacia HI2424] gb|EAY64106.1| hypothetical protein BCPG_02418 [Burkholderia cenocepacia PC184] gb|ACA91483.1| protein of unknown function DUF163 [Burkholderia cenocepacia MC0-3] Length = 156 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/156 (79%), Positives = 136/156 (87%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 M+L I AVGHKMP WI +GF EY KRMPPE RI L+EIKP RSG R+AE VMA ER+KI Sbjct: 1 MKLFILAVGHKMPGWIASGFDEYTKRMPPELRIELREIKPELRSGGRSAESVMAAERQKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 EAALPKGAR++ALDERGRDWT++QL+Q L WQQDGRDVAFVIGGADGLDP KA AD L Sbjct: 61 EAALPKGARLVALDERGRDWTTMQLAQALPGWQQDGRDVAFVIGGADGLDPDLKARADVL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 +RISSMTLPHGMVRV+LAEQLYRAWSITQNHPYHRA Sbjct: 121 LRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHRA 156 >ref|YP_001579167.1| rRNA large subunit methyltransferase [Burkholderia multivorans ATCC 17616] ref|YP_001946716.1| rRNA large subunit methyltransferase [Burkholderia multivorans ATCC 17616] sp|A9AJJ5.1|RLMH_BURM1 RecName: Full=Ribosomal RNA large subunit methyltransferase H; AltName: Full=23S rRNA m3Psi1915 methyltransferase; AltName: Full=rRNA (pseudouridine-N3-)-methyltransferase RlmH gb|ABX14670.1| protein of unknown function DUF163 [Burkholderia multivorans ATCC 17616] dbj|BAG44180.1| conserved hypothetical protein [Burkholderia multivorans ATCC 17616] Length = 156 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/156 (79%), Positives = 137/156 (87%) Query: 1 MQLLIAAVGHKMPAWIETGFQEYAKRMPPECRIILKEIKPVERSGSRTAEIVMAQEREKI 60 M+L I AVGHKMP WI +GF EYAKRMPPE RI L+EIKP RSG R+AE VMA ER+KI Sbjct: 1 MKLFILAVGHKMPGWIASGFDEYAKRMPPELRIELREIKPELRSGGRSAESVMAAERQKI 60 Query: 61 EAALPKGARVIALDERGRDWTSVQLSQQLVQWQQDGRDVAFVIGGADGLDPGFKAGADTL 120 +AALPKGAR++ALDERGRDWT++QL+Q L WQQDGRDVAFVIGGADGLDP KA AD L Sbjct: 61 DAALPKGARIVALDERGRDWTTMQLAQALPGWQQDGRDVAFVIGGADGLDPELKARADLL 120 Query: 121 IRISSMTLPHGMVRVMLAEQLYRAWSITQNHPYHRA 156 +RISSMTLPHGMVRV+LAEQLYRAWSITQNHPYHRA Sbjct: 121 LRISSMTLPHGMVRVLLAEQLYRAWSITQNHPYHRA 156