BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0026.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776952.1| Lipid A core - O-antigen ligase [Herbaspiril... 670 0.0 ref|YP_003776957.1| Lipid A core - O-antigen ligase [Herbaspiril... 265 1e-68 ref|ZP_08635559.1| Lipid A core - O-antigen ligase [Halomonas sp... 250 3e-64 ref|YP_004480489.1| O-antigen polymerase [Marinomonas posidonica... 200 4e-49 ref|ZP_08871827.1| O-antigen polymerase [Verminephrobacter sp. At4] 195 1e-47 ref|YP_004875002.1| hypothetical protein TASI_1231 [Taylorella a... 182 1e-43 ref|YP_004232814.1| O-antigen polymerase [Acidovorax avenae subs... 181 2e-43 ref|YP_004311767.1| O-antigen polymerase [Marinomonas mediterran... 179 9e-43 ref|YP_004485723.1| O-antigen polymerase [Delftia sp. Cs1-4] >gi... 176 8e-42 ref|YP_001561350.1| O-antigen polymerase [Delftia acidovorans SP... 176 9e-42 >ref|YP_003776952.1| Lipid A core - O-antigen ligase [Herbaspirillum seropedicae SmR1] gb|ADJ65044.1| Lipid A core - O-antigen ligase protein [Herbaspirillum seropedicae SmR1] Length = 426 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/426 (90%), Positives = 403/426 (94%) Query: 1 MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGK 60 MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLML+LGAAVLLRKGK Sbjct: 1 MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLMLGAAVLLRKGK 60 Query: 61 PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP 120 PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP Sbjct: 61 PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP 120 Query: 121 GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRL 180 GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILA CGLARAIRL Sbjct: 121 GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILAACGLARAIRL 180 Query: 181 QQPLRWKLMHAAGLILGLTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGS 240 QQPLRWKLMHAAGLILGLTASILSGSRGSWLA PVCA LAAWLLLRAGY+RLVLQ+ AGS Sbjct: 181 QQPLRWKLMHAAGLILGLTASILSGSRGSWLALPVCATLAAWLLLRAGYARLVLQLGAGS 240 Query: 241 LTMLFCLALLPQSPLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAG 300 L ML CLALLPQSPLSAR+RLA+ +TN YVQRADADSSVG RLEMWRIG+ LAPQHLL G Sbjct: 241 LAMLVCLALLPQSPLSARLRLALAETNDYVQRADADSSVGTRLEMWRIGMQLAPQHLLVG 300 Query: 301 WGKQGMMQAKHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQ 360 WGKQGM+ AKHE+V QG ASPSVDEHTHLHNEYLDALVKRG+PGLAA+LVLYLLPLWLF Sbjct: 301 WGKQGMIDAKHEMVSQGQASPSVDEHTHLHNEYLDALVKRGIPGLAALLVLYLLPLWLFH 360 Query: 361 RRQRLVTGSEARLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAMSQEQPV 420 R++RL G EARLAA AGVM+VLSYL FGLTQAFLTHNNGVMLYAFLCSILWA+ QEQ V Sbjct: 361 RQRRLAAGYEARLAASAGVMMVLSYLAFGLTQAFLTHNNGVMLYAFLCSILWALCQEQAV 420 Query: 421 SPSNTA 426 P+NTA Sbjct: 421 HPANTA 426 >ref|YP_003776957.1| Lipid A core - O-antigen ligase [Herbaspirillum seropedicae SmR1] gb|ADJ65049.1| Lipid A core - O-antigen ligase protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/397 (42%), Positives = 243/397 (61%), Gaps = 4/397 (1%) Query: 19 MPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLS 78 M ++S +VFL A+SL+VPSGFS+GS++L LG+ L+ K R L RED LI+ LL+ Sbjct: 1 MGSFTSFSVFLFSAISLIVPSGFSVGSVLLALGSLTLVNK-SVRTTLNREDRLILAVLLA 59 Query: 79 YFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLS 138 YF V + L+H G+EYD PLRF LA ALLLLRAYPP P A W+G +G +GAG+ + Sbjct: 60 YFAVTVAMLLLHHESGKEYDLPLRFFLAAAALLLLRAYPPAPAAFWSGLILGGIGAGVFA 119 Query: 139 LWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGLILGL 198 WQ+ A R G TN IQYG+I+ ++ IL G+ A++ + W + G ++GL Sbjct: 120 GWQYFAHNV-RATGYTNAIQYGDISFIIGILCLTGITWAMQQRAARAWVALLIVGGVMGL 178 Query: 199 TASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVL-QMSAGSLTMLFCLALLPQSPLSA 257 S+ +GSRGSW+A P+C ++ R+ +R V ++A + ++P + A Sbjct: 179 MGSLFTGSRGSWVALPICLLILCVYYSRSIPARYVWGSLAALVAAIAIVFTVMPSTDFRA 238 Query: 258 RIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQG 317 RI LA + + Y+Q+ DADSS+G R+EMWR G + + G GK G +Q + + G Sbjct: 239 RISLAFSEASTYMQKKDADSSIGTRMEMWRAGAMAVAEAPVLGMGKAGFVQWETGQIEAG 298 Query: 318 LASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGSEARLAAIA 377 + + + H++NE+LDALVKRGVPGL +L LY +PL LF R + +A+ A+ Sbjct: 299 KINALMSGNNHVYNEWLDALVKRGVPGLLVLLALYFVPLRLFIARLKSAP-EQAKPYALG 357 Query: 378 GVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAM 414 GV+L+++Y+ FG +Q FL HN+GVM F ILW M Sbjct: 358 GVLLIVNYIGFGFSQVFLAHNSGVMTLGFTMVILWGM 394 >ref|ZP_08635559.1| Lipid A core - O-antigen ligase [Halomonas sp. TD01] gb|EGP21204.1| Lipid A core - O-antigen ligase [Halomonas sp. TD01] Length = 423 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 148/396 (37%), Positives = 228/396 (57%), Gaps = 10/396 (2%) Query: 23 SSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLSYFFV 82 +S+A+FLL ALSLV+PSG+SLG+++L LL + ++ W+I AL++Y V Sbjct: 19 TSVAIFLLGALSLVIPSGYSLGAVVLFFAGVGLLVMRRLPQFTAQDRWVIA-ALMAYALV 77 Query: 83 NAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLSLWQW 142 + R D P+RF+LA+PAL + A+PP+ LW G A+GA+ AG + WQ Sbjct: 78 SLAEVWWDAQGSRGIDKPIRFILAVPALWWVIAHPPKLAFLWGGIAVGAISAGSWAGWQK 137 Query: 143 LADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGLILGLTASI 202 L +G +R GG T+ IQ+GN++ LL +L GL A+ +Q W G + G+ S+ Sbjct: 138 LFEGVSRAGGHTHVIQFGNLSMLLGVLCLAGLGWAVVQRQRNGWVAFMLLGAMGGILGSL 197 Query: 203 LSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLAL----LPQSPLSAR 258 SGSRG W+ FP+ + +L RA + L ++ ++ + + +PQ + +R Sbjct: 198 FSGSRGGWVGFPIVLL----VLYRAYGTGLSPKLKVAAIVAVLTAGIAVYAVPQLGVQSR 253 Query: 259 IRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQGL 318 + AV N Y+ + +SVG+R EMWR L + L GWG G QA L +G+ Sbjct: 254 VHQAVSDVNLYISGENRATSVGSRFEMWRGATLLIQEKPLVGWGSNGYEQAMAALGEKGV 313 Query: 319 ASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGSEARLAAIAG 378 + ++ H HNE++DA KRG+ GL +L LY++P+ LF ++ + R A AG Sbjct: 314 INQEAAQYGHAHNEFIDAFAKRGLIGLFVLLALYIIPMRLFAKQIK-ADNLAVRAIATAG 372 Query: 379 VMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAM 414 V+L ++Y+ FGL+QAFLTHN+GVM+YAFL + W + Sbjct: 373 VLLPVTYIDFGLSQAFLTHNSGVMMYAFLLASFWGI 408 >ref|YP_004480489.1| O-antigen polymerase [Marinomonas posidonica IVIA-Po-181] gb|AEF53570.1| O-antigen polymerase [Marinomonas posidonica IVIA-Po-181] Length = 416 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 132/396 (33%), Positives = 215/396 (54%), Gaps = 22/396 (5%) Query: 29 LLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLA-----LLSYFFVN 83 L A+SL PSG+++G+ ++ L + L P++ + + D ++ LL +FFV Sbjct: 16 LTFAISLSYPSGYNIGATLIFLLGMIFLFVRDPKSDVDKSDVQLIFTFAVYGLLMFFFVY 75 Query: 84 AGLNLVHQAPGREYDAPLRFLLAIP-ALLLLRAYPPRPGALWTGAAIGAVGAGLLSLWQW 142 L+ H RE D P RF+L +P ALLL+R PR ++ G IGA+ A +L +++ Sbjct: 76 --LDGFHI---RELDRPSRFILVLPIALLLMRLNGPRE-WMFYGVVIGAISAAILGVYER 129 Query: 143 LADGAARPGGSTNPIQYGNIAALLAILA-TCGLARAIRLQQPLRWKLMHAAGLILGLTAS 201 + G R G+ +PI +GNIA +L +L+ C L ++ + W ++ + G + G+ AS Sbjct: 130 MYLGLGRAHGNEHPIMFGNIAMMLGMLSFVCALY--FYSKKSIVWTVLSSLGCVCGVAAS 187 Query: 202 ILSGSRGSWLAFPVCAVLAAW---LLLRAGYSRLVLQMSAGSLTMLFCLALLPQSPLSAR 258 ++S SRG W+A P+ + W LL G RL L+++ L F + +PQ+ + R Sbjct: 188 VMSASRGGWVALPLVGLFLLWNSRFLL--GKKRL-LKIALSILVAFFTVYFVPQTGVEGR 244 Query: 259 IRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQGL 318 I A+ Y Q D +SSVG R EMW+ + + + G G+ G K L+R G+ Sbjct: 245 INQALNDITRYDQGIDKNSSVGLRFEMWKGAIKMFEASPMVGVGEYGSYSFKQGLIRDGV 304 Query: 319 ASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGS-EARLAAIA 377 S V +H HNEYL++L G+ G A++++YL+PL LF + + R A+A Sbjct: 305 VSEKVLMFSHAHNEYLNSLGLTGILGFIALMLVYLVPLKLFLGKMKEHQDDWNIRSYAMA 364 Query: 378 GVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWA 413 G ++ + Y+ F L+Q+ +H+ GVM+YAF WA Sbjct: 365 GALVPMCYMDFALSQSMFSHSIGVMMYAFPIVYFWA 400 >ref|ZP_08871827.1| O-antigen polymerase [Verminephrobacter sp. At4] Length = 416 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 143/409 (34%), Positives = 213/409 (52%), Gaps = 23/409 (5%) Query: 29 LLVALSLVVPSGFSLGSLMLV----LGAAVLLRKGKPRAILYREDWLIMLALLSYFFVNA 84 +L L+L +PSG+S G+ +L+ + V R+ PRA + +A L V Sbjct: 17 MLPGLALWLPSGYSFGAALLLLAALVSVPVWCRRRAPRAACWLAAAFCAMAALWLLDVGV 76 Query: 85 GLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLSLWQWLA 144 D P ++LL +P + L A+ PR LW G A+G++G+GL +Q Sbjct: 77 AWGW------GSLDRPAKYLLVLPCIFYLMAFAPRASWLWMGVALGSIGSGLFGFFQTQV 130 Query: 145 DGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRW-KLMHAAGLILGLTASIL 203 R G TN IQYGN++ LLA+++ GL ++ + L W +L+ + ++LG S+L Sbjct: 131 LDLPRANGFTNAIQYGNLSMLLALMS--GLVLGVQWPRWLPWQRLLLVSAVLLGGAGSLL 188 Query: 204 SGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLPQSP-LSARIRLA 262 S SRG WLA + + AWLL+R R V G ++ A L Q P + R+ +A Sbjct: 189 SQSRGGWLALALLLPVGAWLLVRTTGQRWVY---GGLCALVLVAAALTQLPGVKERVGIA 245 Query: 263 VVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQGLASPS 322 + Y +R ++ +SVG RL WR+ + GWG+ G MQ K V GLA PS Sbjct: 246 RQEVQTYQERGESSNSVGQRLAHWRLAWEMGRDRPFIGWGRAGYMQEKARRVAAGLAPPS 305 Query: 323 VDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLF---QRRQRLVTGSEARLA---AI 376 V ++ H HNE+LD VKRG+ G+ ++ Y +PL LF R R G+ R + + Sbjct: 306 VLDYGHAHNEFLDLFVKRGLFGVLVLMGFYGVPLALFWPTAARIRDAAGNMDRQSLSLCL 365 Query: 377 AGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAMSQEQPVSPSNT 425 AGV+L LSY+ FGLTQ FL HN+G + Y F+C +L A + V + Sbjct: 366 AGVLLPLSYIGFGLTQVFLAHNSGNVFYLFMCPLLLAALHRRQVRRTGV 414 >ref|YP_004875002.1| hypothetical protein TASI_1231 [Taylorella asinigenitalis MCE3] gb|AEP36979.1| hypothetical protein TASI_1231 [Taylorella asinigenitalis MCE3] Length = 424 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 121/420 (28%), Positives = 204/420 (48%), Gaps = 11/420 (2%) Query: 15 PLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILY---REDWL 71 PL + FY + VF + +L +G+S+ ++LVL + L+ K + Y R DW Sbjct: 7 PLINKTFYLGIIVFFVFGCAL--ANGYSVSYVLLVLASLFLIFKLRKLDSFYSMSRWDWA 64 Query: 72 IMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGA 131 + L+L F++ +++ + GR YD P + LL + + LR +GA Sbjct: 65 LFLSLAIMVFISYAVSIYYGESGRFYDRPSKILLGLLFVYCLRFIHFEKWIFVLCVQLGA 124 Query: 132 VGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHA 191 + G +L R G I +GN A + + + L L+ + L+ Sbjct: 125 IVFGAFALQDIFMFHFVRANGDMLEIHFGNFALVWGLASLITLFYLNELKPKSLYILLGV 184 Query: 192 AGLILGLTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLP 251 G +LGL ASILSGSRG W+ P+ +L + + +R + R + + S ++ L Sbjct: 185 FGFLLGLIASILSGSRGGWIYLPIGLLLVSLICIRP-FKRSIFFLFTTSSILIIALFTFY 243 Query: 252 QSPLSARIRLAVVQTNGYVQRAD---ADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQ 308 Q + + R+ ++ + + + D+S+ +RLEMWR+ + Q L GWG+ G ++ Sbjct: 244 QLNTNFQTRVDLMVNTVFTKATNPSTLDTSILSRLEMWRLSADMIEQKPLTGWGEVGYLE 303 Query: 309 AKHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTG 368 +GL S +V H H HNEY++ VKRG+ GL A++ +Y + F +R Sbjct: 304 KMKSDYSKGLVSSNVYLHRHPHNEYINEFVKRGIFGLLALIAVYFVSFTYFLKRAIGKHN 363 Query: 369 SEARLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAMSQ--EQPVSPSNTA 426 L A GV+ V Y+ FGLTQA +HN G M + ILWA+++ E ++ +N++ Sbjct: 364 PSITLPASIGVIFVSGYIVFGLTQAVFSHNEGTMYWILGLGILWALTRNAENSLTKTNSS 423 >ref|YP_004232814.1| O-antigen polymerase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44247.1| O-antigen polymerase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 433 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 216/425 (50%), Gaps = 25/425 (5%) Query: 5 AHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAI 64 A F++ G P P ++LA FL+ AL+L +PSG+S G+++L+LGA PR + Sbjct: 4 AAFSSLLGPGPWPRR--LTTLAAFLVPALALTLPSGYSYGAVLLLLGALAT----LPRWV 57 Query: 65 LYREDWLIMLALLSYFFVNAGLNLVHQAPGR---EYDAPLRFLLAIPALLLLRAYPPRPG 121 R D LAL++ F L V P ++D P++F+L L + + PPRP Sbjct: 58 RVRPD-RGTLALVAVTFAMGLLWCVMSDPRETMGQWDRPIKFMLGAVCGLFIASQPPRPR 116 Query: 122 ALWTGAAIGAVGAGLLSLWQWLADGAAR----PGGSTNPIQYGNIAALLAILATCGLARA 177 L+ G +G +GAGL++LWQ GA R P G TN IQ+GN+A LL + L Sbjct: 117 PLFWGLLVGCIGAGLVALWQVHVQGALRASGFPTGRTNAIQWGNLALLLGSMLALQLIVL 176 Query: 178 IRLQQPLRWKLMHAAGLILGLTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMS 237 R Q P + + L S+LS SRG WLA + + WLL R R+ ++ Sbjct: 177 WR-QLPRVVAWLAVVAALGALNGSVLSQSRGGWLALLLALPVGLWLLHRLHPGRIT-AIT 234 Query: 238 AGSLTMLFCLALLPQSPLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHL 297 A +T L L + + R + Y +AD+SVG RLE WR ++ + Sbjct: 235 AVLVTALAVLTAMNWGVMEKRWERMQEEVTQYDTHGEADNSVGQRLEHWRFAWNVGMERP 294 Query: 298 LAGWGKQGMMQAKHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLW 357 GWG G MQ K V PS+ E+ ++HNE LD VK G+ G+ +L Y +PL Sbjct: 295 WTGWGMAGYMQEKAARVAAKQYEPSILEYIYVHNEPLDVFVKTGIGGVVLLLCFYGVPLA 354 Query: 358 LF--QRRQRLVTGSE-----ARLAA--IAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLC 408 LF RR+ SE A++ A ++GV + L Y FGLTQ F HN+G+M Y F+ Sbjct: 355 LFWPSRRRMAAVASEPEPVRAQVLALRLSGVCIPLLYAGFGLTQVFFAHNSGIMFYIFMN 414 Query: 409 SILWA 413 ++WA Sbjct: 415 MVIWA 419 >ref|YP_004311767.1| O-antigen polymerase [Marinomonas mediterranea MMB-1] gb|ADZ89931.1| O-antigen polymerase [Marinomonas mediterranea MMB-1] Length = 408 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 127/390 (32%), Positives = 201/390 (51%), Gaps = 7/390 (1%) Query: 29 LLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLSYFFVNAGLNL 88 L +ALSLVV +G+S+GS +L L + ++ R L R+D L+ YF + Sbjct: 14 LCLALSLVVSNGYSVGSAILFLISPLIFVF--SRFNLSRQDKLLAAVFALYFVLMIVFIY 71 Query: 89 VHQAPGREYDAPLRFLLAIPAL-LLLRAYPPRPGALWTGAAIGAVGAGLLSLWQWLADGA 147 + RE D P RFLL +P L L+L Y PR ALW G+ +GA GA ++++++ Sbjct: 72 LDGWHYRELDRPSRFLLVLPVLYLMLYCYGPRI-ALWVGSMLGAYGAVVVAVYERFVLDL 130 Query: 148 ARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGLILGLTASILSGSR 207 R G +PI +G+ + LL +L+ +Q L L A G+ S+LS SR Sbjct: 131 PRASGGEHPIMFGDTSMLLGVLSAMATLYFFSKRQFLYVGL-AALAFFSGVMGSLLSASR 189 Query: 208 GSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLPQSPLSARIRLAVVQTN 267 G W+ P+ V W +LV+ + + + +P+ +S RI A Sbjct: 190 GGWVGLPLIMVFLLWQSRDLLGKKLVIGICLLGVMGAVTICNIPKLGVSNRIYEAAHNIE 249 Query: 268 GYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQGLASPSVDEHT 327 Y+Q D+++SVG R EMW+ +++ + G G+ + K +L +G+ + E Sbjct: 250 MYLQ-GDSNTSVGLRFEMWKASVYMLADSPIFGVGEYSSKEFKQKLSDEGVITQITVEFD 308 Query: 328 HLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGS-EARLAAIAGVMLVLSYL 386 H HNEYLDAL RG+ G A++ +YL+PL LF + R + + AI G ++ +SY+ Sbjct: 309 HAHNEYLDALGLRGLVGFLALMAVYLVPLRLFLAKMREHQDNWNIKAYAIGGALIPMSYM 368 Query: 387 TFGLTQAFLTHNNGVMLYAFLCSILWAMSQ 416 F LTQ+ +HN GVM+Y F + WA ++ Sbjct: 369 DFALTQSMFSHNIGVMMYVFPIAFFWAATR 398 >ref|YP_004485723.1| O-antigen polymerase [Delftia sp. Cs1-4] gb|AEF87368.1| O-antigen polymerase [Delftia sp. Cs1-4] Length = 422 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 141/412 (34%), Positives = 221/412 (53%), Gaps = 36/412 (8%) Query: 23 SSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYRED---WLIM-----L 74 ++LA L+ L+L + SG+S G+ ++VLGA L PR + YR+ WL++ + Sbjct: 13 TTLAAILVPGLALWLRSGYSYGAGLMVLGALCFL----PRWVRYRQSNGTWLLVALFLGM 68 Query: 75 ALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGA 134 A++ YF L+++ G ++D P++F+L +LL YPP G +G+ GA Sbjct: 69 AVMWYF-----LSVLDGGTG-QFDRPVKFILGAVSLLFAMCYPPTARIFLWGIPLGSAGA 122 Query: 135 GLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGL 194 G ++LWQ G R G TN IQ+GN+A LL +C A + Q+ L W+L+ A Sbjct: 123 GFMALWQVCVLGMERATGYTNAIQWGNMALLLGCF-SCIYAVSFWHQRSLLWRLLVLAAA 181 Query: 195 ILGLTASILSGSRGSWLA----FPVCAVLAAWLLLRAGY-SRLVLQMSAGSLTMLFCLAL 249 LG AS+LSGSRG WLA F + VL + R Y RL+L +A + + +A Sbjct: 182 ALGALASLLSGSRGGWLALLPMFFMLMVLVR--MYRPQYFGRLLLGCAALLVALATVMAF 239 Query: 250 LPQSPLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQA 309 +P+ +S R+ + + Y+ ++++S+G RLE +R+ + + + L GWG QG + Sbjct: 240 IPR--VSERVDEVYLDVSTYLHAGNSNTSLGTRLEQYRLAVQMIGEKPLLGWGMQGYVDE 297 Query: 310 KHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLF---QRRQRLV 366 H V G S+ E+ +HN++LD VK GVPG+ L++ LWLF +RR L Sbjct: 298 MHRRVDAGSYGQSIREYNFIHNDFLDIWVKLGVPGVLLQAALFISLLWLFWPSRRRMALW 357 Query: 367 TGS-----EARLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWA 413 EA L I G ++ YL FG++Q F HN+G++ + FL LW+ Sbjct: 358 PADSTPWREALLLRILGSLMPAMYLAFGMSQQFFVHNSGIVFFVFLVVALWS 409 >ref|YP_001561350.1| O-antigen polymerase [Delftia acidovorans SPH-1] gb|ABX32965.1| O-antigen polymerase [Delftia acidovorans SPH-1] Length = 422 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 141/412 (34%), Positives = 220/412 (53%), Gaps = 36/412 (8%) Query: 23 SSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYRED---WLIM-----L 74 ++LA L+ L+L + SG+S G+ ++VLGA L PR + YR+ WL++ + Sbjct: 13 TTLAAILVPGLALWLRSGYSYGAGLMVLGALCFL----PRWVRYRQSNGTWLLVALFLGM 68 Query: 75 ALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGA 134 A++ YF L+++ G ++D P++F+L +LL YPP G +G+ GA Sbjct: 69 AVMWYF-----LSVLDGGTG-QFDRPVKFILGAVSLLFAMCYPPTARIFLWGIPLGSAGA 122 Query: 135 GLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGL 194 G ++LWQ G R G TN IQ+GN+A LL +C A + Q+ L W+L+ A Sbjct: 123 GFMALWQVCVLGMERATGYTNAIQWGNMALLLGCF-SCIYAVSFWHQRSLLWRLLVLAAA 181 Query: 195 ILGLTASILSGSRGSWLA----FPVCAVLAAWLLLRAGY-SRLVLQMSAGSLTMLFCLAL 249 LG AS+LSGSRG WLA F + VL + R Y RL+L +A + + +A Sbjct: 182 ALGALASLLSGSRGGWLALLPMFFMLMVLVR--MYRPQYFGRLLLGCAAIVVALATVMAF 239 Query: 250 LPQSPLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQA 309 +P+ +S R+ + + Y+ ++++S+G RLE +R+ + + + L GWG QG + Sbjct: 240 IPR--VSERVDEVYLDVSTYLYAGNSNTSLGTRLEQYRLAVQMIGEKPLLGWGMQGYVDE 297 Query: 310 KHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLF---QRRQRLV 366 H V G S+ E+ +HN++LD VK GVPG+ L++ LWLF +RR L Sbjct: 298 MHRRVAAGSYGQSIREYNFIHNDFLDIWVKLGVPGVLLQAALFISLLWLFWPSRRRMALW 357 Query: 367 TGS-----EARLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWA 413 EA L I G ++ YL FG++Q F HN+G++ + FL LW Sbjct: 358 PADSTPWREALLLRILGSLMPAMYLAFGMSQQFFVHNSGIVFFVFLVVALWT 409