BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0014.p         (487 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum s...   992   0.0  
ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacteriu...   742   0.0  
ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungi...   741   0.0  
ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas ar...   718   0.0  
ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae ...   688   0.0  
ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing pro...   628   e-178
ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkh...   612   e-173
ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofi...   610   e-172
ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing pro...   608   e-172
ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkho...   608   e-172

>ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
 gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 487

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/487 (100%), Positives = 487/487 (100%)

Query: 1   MSDTTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAA 60
           MSDTTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAA
Sbjct: 1   MSDTTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAA 60

Query: 61  QTGTGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP 120
           QTGTGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP
Sbjct: 61  QTGTGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP 120

Query: 121 LRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD 180
           LRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD
Sbjct: 121 LRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD 180

Query: 181 MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQT 240
           MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQT
Sbjct: 181 MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQT 240

Query: 241 IYKVEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSE 300
           IYKVEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSE
Sbjct: 241 IYKVEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSE 300

Query: 301 RMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASG 360
           RMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASG
Sbjct: 301 RMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASG 360

Query: 361 DAISLFCDKDDRLLTDIEKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRG 420
           DAISLFCDKDDRLLTDIEKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRG
Sbjct: 361 DAISLFCDKDDRLLTDIEKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRG 420

Query: 421 DRSDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAVETVSTKPELAKNNRPKAKVAAL 480
           DRSDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAVETVSTKPELAKNNRPKAKVAAL
Sbjct: 421 DRSDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAVETVSTKPELAKNNRPKAKVAAL 480

Query: 481 LGGMPKR 487
           LGGMPKR
Sbjct: 481 LGGMPKR 487


>ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
 gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille]
          Length = 513

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/491 (77%), Positives = 411/491 (83%), Gaps = 8/491 (1%)

Query: 4   TTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTG 63
           T+ A+A  A PAVRFEDFGL+P+IL+AL++QGYVHPTPIQA+AIPVVLQG DVMGAAQTG
Sbjct: 24  TSPAAAVDAHPAVRFEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQTG 83

Query: 64  TGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRS 123
           TGKTAGFSLPIIQ L+ HA+ SASPARHPVRALILTPTRELADQVADNV AY R TPLRS
Sbjct: 84  TGKTAGFSLPIIQLLMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPLRS 143

Query: 124 TVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGF 183
            VVFGGVDMAPQTA LR+GVEIVIATPGRLLDH+QQKT+NLSQTQILVMDEADRMLDMGF
Sbjct: 144 VVVFGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDMGF 203

Query: 184 LPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYK 243
           LPDLQRIINLLPKQRQNL+FSATFSPEIKKLAA+F  +PVTIEVARSNATAENVTQ +YK
Sbjct: 204 LPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIVYK 263

Query: 244 VEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMA 303
           VEE  K DAVS+IIR+R LKQVIVFSNTKIGASRLAR L  EGVKASAIHGDK+Q+ERMA
Sbjct: 264 VEEGDKGDAVSYIIRERGLKQVIVFSNTKIGASRLARQLENEGVKASAIHGDKSQAERMA 323

Query: 304 ALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 363
           ALEAFK G IEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI
Sbjct: 324 ALEAFKNGTIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 383

Query: 364 SLFCDKDDRLLTDIEKLIKKKFERAELTGFAPRA-----RHERSDRAERGERSERG-ERS 417
           SL+ DKD RLL DIEK+IK KF  A+L GF P       R ERS R +  E   RG ER 
Sbjct: 384 SLYSDKDARLLVDIEKMIKHKFVPAQLAGFVPAGNRASERKERSPRRDDSESRGRGSERR 443

Query: 418 DRGDRSDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAVETVSTKP-ELAKNNRPKAK 476
           +   R   G R   SR   AAP R+EK+DP+F KPYEP+       KP E A    PK K
Sbjct: 444 ESAPREASGGRDPGSRSAYAAP-RKEKIDPFFTKPYEPAPSTISEAKPAEQAPAKPPKHK 502

Query: 477 VAALLGGMPKR 487
           +AALLGG PKR
Sbjct: 503 MAALLGGAPKR 513


>ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
 gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
          Length = 506

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/492 (76%), Positives = 413/492 (83%), Gaps = 7/492 (1%)

Query: 2   SDTTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQ 61
           S+  +  A P  P VRF DFGLSPDIL+AL +QGYVHPTPIQA+AIPVVLQGRDVMGAAQ
Sbjct: 14  SEMQADPAVPTTPTVRFADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQ 73

Query: 62  TGTGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPL 121
           TGTGKTAGFSLPIIQ LL HA+ SASPARHPVRALILTPTRELADQVA+NV AYCR TPL
Sbjct: 74  TGTGKTAGFSLPIIQLLLAHANTSASPARHPVRALILTPTRELADQVAENVKAYCRHTPL 133

Query: 122 RSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDM 181
           RSTVVFGGVD+APQTA LR+G+EIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLDM
Sbjct: 134 RSTVVFGGVDIAPQTAALRSGIEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDM 193

Query: 182 GFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTI 241
           GFLPDLQRIINLLPK+RQNL+FSATFS EIKKLAA+F  NPVTIEVARSNATA+NVTQT+
Sbjct: 194 GFLPDLQRIINLLPKERQNLMFSATFSGEIKKLAATFLKNPVTIEVARSNATADNVTQTM 253

Query: 242 YKVEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSER 301
           Y V E  KA+AVS+IIR+R LKQVIVFSNTKIGAS+LAR L  EGV ASAIHGDKTQ+ER
Sbjct: 254 YHVNEQTKAEAVSYIIRERNLKQVIVFSNTKIGASKLARHLENEGVNASAIHGDKTQNER 313

Query: 302 MAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGD 361
           MAALEAFK+G+IEVLVATDVAARGLDIAELPCVIN+DLPYNAEDYVHRIGRTGRAGASGD
Sbjct: 314 MAALEAFKRGEIEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGD 373

Query: 362 AISLFCDKDDRLLTDIEKLIKKKFERAELTGFAPR-ARHERSDRAERG--ERSERGERSD 418
           AISL+ DKD+RLL DIEK+IK KF RAELTGF  + A  ER   + RG   R+ RGER +
Sbjct: 374 AISLYADKDERLLVDIEKMIKYKFVRAELTGFVAKPASAERERSSGRGADARNGRGERGE 433

Query: 419 -RGDRSDRGERSRSSREGGAAPMRREKVDPWFLKPYEPS---AVETVSTKPELAKNNRPK 474
            R   SDR  +   S        R+EKVDPWFLKPYEP+    V+T S  P        K
Sbjct: 434 GRAPASDRSTQHTRSAYTSTPTSRKEKVDPWFLKPYEPTLAAEVDTSSVAPAGGSIKPSK 493

Query: 475 AKVAALLGGMPK 486
            K+AALLGG+PK
Sbjct: 494 VKLAALLGGLPK 505


>ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
 emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans]
          Length = 502

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/489 (76%), Positives = 400/489 (81%), Gaps = 20/489 (4%)

Query: 13  APAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSL 72
           APA+RF+DFGL+P+ILKAL +QGYVHPTPIQA+AIPVVL+G DVMGAAQTGTGKTAGFSL
Sbjct: 20  APAIRFQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAAQTGTGKTAGFSL 79

Query: 73  PIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDM 132
           PIIQ L+ HA+ SASPARHPVRALILTPTRELADQVA NV AY R TPLRS VVFGG+DM
Sbjct: 80  PIIQLLMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTPLRSLVVFGGMDM 139

Query: 133 APQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIIN 192
            PQTA LR GVEIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLDMGFLPDLQRIIN
Sbjct: 140 TPQTAALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLDMGFLPDLQRIIN 199

Query: 193 LLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADA 252
           LLPKQRQNL+FSATFSPEIKKLAA+F  +PVTIEVARSNATAENVTQ IYKVEE AK DA
Sbjct: 200 LLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIIYKVEEEAKRDA 259

Query: 253 VSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQ 312
           VSFIIR+R LKQVIVFSNTKIGASRLAR L +EGVKASAIHGDK+QSERM ALE FK G 
Sbjct: 260 VSFIIRERGLKQVIVFSNTKIGASRLARQLESEGVKASAIHGDKSQSERMQALEQFKNGT 319

Query: 313 IEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDR 372
           IEVLVATDVAARGLDIAELPCVIN+DLPYNAEDYVHRIGRTGRAGASGDAISLF DKD R
Sbjct: 320 IEVLVATDVAARGLDIAELPCVINFDLPYNAEDYVHRIGRTGRAGASGDAISLFSDKDAR 379

Query: 373 LLTDIEKLIKKKFERAELTGFAP-----------RARHERSDRAERGERSERGERSDRGD 421
           LL DIEK+IK KF  AEL GF P           R  HERS R     + E   R  R  
Sbjct: 380 LLVDIEKMIKHKFVPAELIGFTPSSGRTAERSHDRRAHERSPR-----KDESAPRPSRAP 434

Query: 422 RSDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAVETVSTKPELAKN--NRP-KAKVA 478
               G  S  SR   AA  R+EK+DP+F +PYEP+    VS   +LA     +P K K+A
Sbjct: 435 ERSPGAASNGSRSAYAAAPRKEKIDPFFTRPYEPAPSTMVSDN-KLADQVPAKPQKHKMA 493

Query: 479 ALLGGMPKR 487
           ALLGG PKR
Sbjct: 494 ALLGGAPKR 502


>ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
          Length = 504

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/505 (71%), Positives = 401/505 (79%), Gaps = 21/505 (4%)

Query: 1   MSDTTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAA 60
           M+D  + +   + PA+RFEDFGLS +IL+ALA+QGY HPTPIQA AIPVVLQGRDVMGAA
Sbjct: 1   MTDIQTDAVPDSEPALRFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAA 60

Query: 61  QTGTGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTP 120
           QTGTGKTAGFSLPIIQ LL +AS+SASPARHPVRALILTPTRELADQVA+NV AYCR TP
Sbjct: 61  QTGTGKTAGFSLPIIQLLLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTP 120

Query: 121 LRSTVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD 180
           LRSTVVFGG+DMAPQTA LRAGVEIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLD
Sbjct: 121 LRSTVVFGGMDMAPQTAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLD 180

Query: 181 MGFLPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQT 240
           MGFLPDLQRIINLLPK+RQNL+FSATFS EIKKLA+SF +NPVTIEVARSN TA+ VTQ 
Sbjct: 181 MGFLPDLQRIINLLPKKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQV 240

Query: 241 IYKVE-EAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQS 299
           +YKV+ + AK D V+ +IR R+LKQV+VFSNTKIGASRLAR L   GVKASAIHGDKTQS
Sbjct: 241 VYKVDSDDAKRDIVAHLIRGRQLKQVLVFSNTKIGASRLARELEKGGVKASAIHGDKTQS 300

Query: 300 ERMAALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGAS 359
           ERMAALEAFK G+I+VLVATDVAARGLDI++LPCVINYDLPYNAEDYVHRIGRTGRAGAS
Sbjct: 301 ERMAALEAFKGGEIDVLVATDVAARGLDISDLPCVINYDLPYNAEDYVHRIGRTGRAGAS 360

Query: 360 GDAISLFCDKDDRLLTDIEKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDR 419
           GDAISLF  KD+RLL DIEKLI  KF  AEL G+ P    ER++R  R +          
Sbjct: 361 GDAISLFTTKDERLLLDIEKLINHKFVPAELVGYTPPV--ERAERRPRRDAEAAVAPLAA 418

Query: 420 GDRS----------------DRGERSRSSREGGAAP--MRREKVDPWFLKPYEPSAVETV 461
           G  S                +    S SSR   + P   RREKVDPWF KPYEP+    V
Sbjct: 419 GAVSAQVPTERPVRPPRPFREDSSHSESSRTDTSRPPFQRREKVDPWFSKPYEPNVAAPV 478

Query: 462 STKPELAKNNRPKAKVAALLGGMPK 486
                 A  N+ K + A LLGG+PK
Sbjct: 479 EPVGATAAANKNKPRRAVLLGGVPK 503


>ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
           vietnamiensis G4]
 gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
           G4]
          Length = 512

 Score =  628 bits (1619), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 339/492 (68%), Positives = 376/492 (76%), Gaps = 12/492 (2%)

Query: 4   TTSASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTG 63
           T S S A  A A  F+ FGL+PDILKA+ EQGY  PTPIQAQAIPVVL GRDVMGAAQTG
Sbjct: 22  TMSDSVAKPADAT-FDQFGLAPDILKAIVEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTG 80

Query: 64  TGKTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRS 123
           TGKTA FSLPIIQRLL HAS SASPARHPVRALILTPTRELADQVA NV AY + T LRS
Sbjct: 81  TGKTASFSLPIIQRLLPHASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRS 140

Query: 124 TVVFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGF 183
            VVFGGVDM PQ A LR GVEI+IATPGRLLDHVQQKT NL Q Q+LV+DEADRMLDMGF
Sbjct: 141 AVVFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGF 200

Query: 184 LPDLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYK 243
           LPDLQRI+NLLPK+RQ LLFSATFSPEIKKLA+++  NP TIEVARSN+T  NVTQ +Y 
Sbjct: 201 LPDLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYD 260

Query: 244 VEEAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMA 303
           V E  K  AV  ++R R LKQVIVF N+KIGASRLAR L  +GV ASAIHGDK+Q ERM 
Sbjct: 261 VAEGDKQAAVVQLLRGRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQIERMQ 320

Query: 304 ALEAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAI 363
           AL+AFK+G+IE LVATDVAARGLDIAELP VIN+DLP+NAEDYVHRIGRTGRAGA+GDA+
Sbjct: 321 ALDAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGATGDAL 380

Query: 364 SLFCDKDDRLLTDIEKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRGD-R 422
           SL    + + L DIEKLIK+  E   L    P ARH   +R ERGERSERG R DR + R
Sbjct: 381 SLCSPNERKQLADIEKLIKRPLEVQTLALDKP-ARHRHDERNERGERSERGGRRDRDEHR 439

Query: 423 SDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAV-----ETVSTKPELAKNNRPKAKV 477
                RS S+  GG        VD +FLKPYEPS       ET S +    K   PK +V
Sbjct: 440 GASARRSGSAERGGHHRRHDAPVDDFFLKPYEPSTPAQQPEETTSVQQPEKKG--PKRQV 497

Query: 478 AALLG--GMPKR 487
           AALLG  GMP++
Sbjct: 498 AALLGGFGMPRK 509


>ref|YP_004361570.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
 gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
          Length = 485

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 331/490 (67%), Positives = 376/490 (76%), Gaps = 17/490 (3%)

Query: 6   SASAAPAAPAVRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTG 65
           S SAA +  A  F+ FGL+PDILKA+AEQGY  PTPIQA+AIPVVL GRDVMGAAQTGTG
Sbjct: 2   SDSAATSVDAT-FDQFGLAPDILKAIAEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG 60

Query: 66  KTAGFSLPIIQRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTV 125
           KTA FSLPIIQRLL  A+ SASPARHPVRALILTPTRELADQVA NV AY + T LRS V
Sbjct: 61  KTASFSLPIIQRLLPQANSSASPARHPVRALILTPTRELADQVAANVHAYAKHTALRSAV 120

Query: 126 VFGGVDMAPQTAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLP 185
           VFGGVDM  Q A LR GVEI+IATPGRLLDHVQQKT NL Q Q+LV+DEADRMLDMGFLP
Sbjct: 121 VFGGVDMNSQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQMLVLDEADRMLDMGFLP 180

Query: 186 DLQRIINLLPKQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVE 245
           DLQRI+NLLPKQRQ LLFSATFSPEIKKLA+++ +NP TIEVARSNATA NVTQ +Y++ 
Sbjct: 181 DLQRILNLLPKQRQTLLFSATFSPEIKKLASTYLSNPQTIEVARSNATATNVTQVVYEIA 240

Query: 246 EAAKADAVSFIIRQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAAL 305
           E  K  AV  +IR R LKQVIVF N+KIGASRLAR L  +GV A+AIHGD++Q+ERM AL
Sbjct: 241 EGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQLERDGVVATAIHGDRSQNERMQAL 300

Query: 306 EAFKQGQIEVLVATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISL 365
           +AFK+G++E LVATDVAARGLDIAELP VIN+DLP+NAEDYVHRIGRTGRAGASGDA+SL
Sbjct: 301 DAFKRGEVEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL 360

Query: 366 FCDKDDRLLTDIEKLIKKKFERAELTGFAP-RARHERSDRAERG-ERSE-RGERSDRGDR 422
               + + L DIEKLIK+      L   AP RAR ER +R+ER  +R E RG R   G  
Sbjct: 361 CSPNERKQLADIEKLIKRDLPLQPLAVDAPVRARQERGERSERSRDRDESRGPRRSHGHG 420

Query: 423 SDRGERSRSSREGGAAPMRREKVDPWFLKPYEPSAVE---TVSTKPELAKNNRPKAKVAA 479
            +R     S RE   AP     VD +FLKPYEPS        +TK   +   + K  +AA
Sbjct: 421 GERTHHHHSRRE---AP-----VDEFFLKPYEPSPSAREPEEATKQPASSEKKSKQPLAA 472

Query: 480 LLG--GMPKR 487
           LLG  GMP+R
Sbjct: 473 LLGGFGMPRR 482


>ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
 gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
           PsJN]
          Length = 489

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 324/480 (67%), Positives = 369/480 (76%), Gaps = 18/480 (3%)

Query: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
           F+ FGL+PDILKA+ E GY  PTPIQ QAIPVVL GRD+MGAAQTGTGKTA FSLPIIQR
Sbjct: 13  FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72

Query: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137
           LL  AS SASPARHPVRALILTPTRELADQVA NV AY + T LRS VVFGGVDM PQ+ 
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132

Query: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
            LR GVEI+IATPGRLLDHVQQKT NL Q QILV+DEADRMLDMGFLPDLQRI+NLLPK+
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFII 257
           RQ LLFSATFS EIKKLAA++  NP TIEVARSN+TA NVTQ +Y+V E  K  AV  +I
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQLI 252

Query: 258 RQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLV 317
           R+R LKQVIVF N+KIGASRLAR+L  +GV A+AIHGD+TQ+ERM AL+AFK+G+IE LV
Sbjct: 253 RERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEALV 312

Query: 318 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTDI 377
           ATDVAARGLDIAELP VIN+DLP+NAEDYVHRIGRTGRAGASGDA+SL    + + L DI
Sbjct: 313 ATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADI 372

Query: 378 EKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRGDRSDRGERSRSSREGGA 437
           EKLIK+  +   LT  AP  RH   +RA R ERS  G       R DRG R R+    G+
Sbjct: 373 EKLIKRPLDVQRLTVEAP-VRHHHEERAPRRERSSEG-------REDRGSRRRTGASSGS 424

Query: 438 AP----MRREKVDPWFLKPYE--PSAVETVSTKPELAKNNRPKAK--VAALLG--GMPKR 487
                  R + VD +FLKPYE  PS+V  +      A   +P +K  +AALLG  GMP++
Sbjct: 425 YDRPHHHRAQPVDDFFLKPYEPSPSSVRKIEEAAAAAAPQKPASKQPLAALLGGFGMPRK 484


>ref|YP_003906304.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
           CCGE1003]
 gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
          Length = 487

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 323/481 (67%), Positives = 366/481 (76%), Gaps = 20/481 (4%)

Query: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
           F+ FGL+PDILKA+ E GY  PTPIQAQAIPVVL GRDVMGAAQTGTGKTA FSLPIIQR
Sbjct: 13  FDQFGLAPDILKAVKESGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 72

Query: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137
           LL  AS SASPARHPVRALILTPTRELADQVA NV AY + T LRS VVFGGVDM PQ+ 
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132

Query: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
            LR GVEI+IATPGRLLDHVQQKT NL Q QILV+DEADRMLDMGFLPDLQRI+NLLPK+
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFII 257
           RQ LLFSATFS EIKKLAA++  NP TIEVARSN+TA NVTQ +Y+V E  K  AV  +I
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVYEVAEGDKTGAVVQLI 252

Query: 258 RQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLV 317
           R+R LKQVIVF N+KIGASRLAR+L  +GV A+AIHGD++Q+ERM AL+AFK+G+IE LV
Sbjct: 253 RERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQALDAFKRGEIEALV 312

Query: 318 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTDI 377
           ATDVAARGLDIAELP VIN+DLP+NAEDYVHRIGRTGRAGASGDA+SL    + + L DI
Sbjct: 313 ATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADI 372

Query: 378 EKLIKKKFERAELTGFAPRARHERSDRAERGERSERGERSDRGDRSDRGERSRSSREGGA 437
           EKLIK+  +   LT  AP  RH   DRA R ER E         R +RG R R+    G+
Sbjct: 373 EKLIKRPLDVQRLTVDAP-VRHHHEDRAPRRERGE--------GRDERGARRRAGSSSGS 423

Query: 438 ----APMRREKVDPWFLKPYEPSAVETVSTKPELAKNNRP-----KAKVAALLG--GMPK 486
                  R + VD +FLKPYEPS       +   A  + P     K  +AALLG  GMP+
Sbjct: 424 FDRPHHHRAQPVDDFFLKPYEPSPASVRKVEEAEAARSAPQKPTSKQPLAALLGGFGMPR 483

Query: 487 R 487
           +
Sbjct: 484 K 484


>ref|ZP_02892549.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
 gb|EDT01868.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
           IOP40-10]
          Length = 571

 Score =  608 bits (1568), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 328/484 (67%), Positives = 368/484 (76%), Gaps = 16/484 (3%)

Query: 18  FEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPIIQR 77
           F+ FGL+ DILKA+AEQGY  PTPIQAQAIPVVL GRDVMGAAQTGTGKTA FSLPIIQR
Sbjct: 87  FDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTGKTASFSLPIIQR 146

Query: 78  LLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQTA 137
           LL  AS SASPARHPVRALILTPTRELADQVA NV AY + T LRS VVFGGVDM PQ A
Sbjct: 147 LLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTSLRSAVVFGGVDMNPQMA 206

Query: 138 ILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLPKQ 197
            LR GVEI+IATPGRLLDHVQQKT NL Q QILV+DEADRMLDMGFLPDLQRI+NLLPK+
Sbjct: 207 ELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 266

Query: 198 RQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSFII 257
           RQ LLFSATFSPEIKKLA+++  NP TIEVARSN+T  NVTQ +Y V E  K  AV  ++
Sbjct: 267 RQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVAEGDKHSAVVQLL 326

Query: 258 RQRELKQVIVFSNTKIGASRLARTLVAEGVKASAIHGDKTQSERMAALEAFKQGQIEVLV 317
           R R LKQVIVF N+KIGASRLAR L  +GV ASAIHGDK+Q ERM AL+AFK+G+IE LV
Sbjct: 327 RDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKSQLERMQALDAFKRGEIEALV 386

Query: 318 ATDVAARGLDIAELPCVINYDLPYNAEDYVHRIGRTGRAGASGDAISLFCDKDDRLLTDI 377
           ATDVAARGLDI ELP VIN+DLP+NAEDYVHRIGRTGRAGA+GDA+SL    + + L DI
Sbjct: 387 ATDVAARGLDIVELPAVINFDLPFNAEDYVHRIGRTGRAGATGDALSLCSPNERKQLADI 446

Query: 378 EKLIKKKFERAELTGFAP-RARHERSDRAERGERSERGERS-DRGDRSDRGE-------R 428
           EKLIK+  E   L    P R RH+       GERS  GER+ +RG R +R E       R
Sbjct: 447 EKLIKRPLEVQTLALDKPSRHRHDERGGERAGERS--GERAGERGGRRERDEHRGASARR 504

Query: 429 SRSSREGGAAPMRREKVDPWFLKPYEPSAVETVSTKPELAKNNR---PKAKVAALLG--G 483
           S  S  GG        VD +FLKPYEPS   T   + + A+ +    PK +VAALLG  G
Sbjct: 505 SGGSERGGHHRRHEAPVDDFFLKPYEPSVPATQPEETQSAQQHEKKGPKRQVAALLGGFG 564

Query: 484 MPKR 487
           MP++
Sbjct: 565 MPRK 568