BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0004.p (156 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776971.1| transcription antiterminator (L factor) tran... 319 1e-85 ref|YP_004754080.1| transcription termination protein NusB [Coll... 260 4e-68 ref|YP_001354028.1| N utilization substance protein B [Janthinob... 251 3e-65 ref|YP_001099345.1| transcription termination, L factor (N utili... 251 3e-65 ref|ZP_08273569.1| Transcription termination protein NusB [Oxalo... 248 2e-64 ref|ZP_04579724.1| N utilization substance protein B [Oxalobacte... 232 1e-59 ref|ZP_04577572.1| transcription termination [Oxalobacter formig... 230 5e-59 ref|YP_002980677.1| transcription antitermination protein NusB [... 197 3e-49 ref|YP_294992.1| transcription antitermination protein NusB [Ral... 196 8e-49 ref|YP_004686550.1| N utilization substance protein NusB [Cupria... 196 1e-48 >ref|YP_003776971.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65063.1| transcription antiterminator (L factor) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 156 Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 156/156 (100%), Positives = 156/156 (100%) Query: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD Sbjct: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 Query: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE Sbjct: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR Sbjct: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156 >ref|YP_004754080.1| transcription termination protein NusB [Collimonas fungivorans Ter331] gb|AEK63257.1| Transcription termination protein NusB [Collimonas fungivorans Ter331] Length = 156 Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 125/156 (80%), Positives = 142/156 (91%), Gaps = 1/156 (0%) Query: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 M+NKT HAN +K+RTPRHRAREFALQGLYQWLLN+ED AI +IR+AHGFDKADAEHF+ Sbjct: 1 MTNKTLHANPSKSRTPRHRAREFALQGLYQWLLNNEDVTAISENIRQAHGFDKADAEHFN 60 Query: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 +LL GAI+DA LRAGL PLIDR I ELSPVEHAALLIGA+ELQNH+EIPY+VVINEAVE Sbjct: 61 SLLYGAIKDAVPLRAGLEPLIDRKISELSPVEHAALLIGAFELQNHVEIPYRVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156 LTKSFGGIDGHKYVNGVLD+FAA+TRATE+ AG++ Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAAKTRATEI-GAGKK 155 >ref|YP_001354028.1| N utilization substance protein B [Janthinobacterium sp. Marseille] gb|ABR88348.1| N utilization substance protein B [Janthinobacterium sp. Marseille] Length = 156 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 121/156 (77%), Positives = 133/156 (85%), Gaps = 1/156 (0%) Query: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 M+ KT HAN +KNRTPRHRAREFALQGLYQWLLN+ED IE HIR+AHGFDKADAEHFD Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRVIETHIRQAHGFDKADAEHFD 60 Query: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 LL G ++ +LRAGLAPLIDR I LSPVEHAALLIGA+EL+NHIEIPYKVVINEAVE Sbjct: 61 ALLYGTVKQVGELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156 LTKSFGGIDGHKYVNGVLD+FA R E+ AGR+ Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAVSAREVEIN-AGRK 155 >ref|YP_001099345.1| transcription termination, L factor (N utilization substance protein B) [Herminiimonas arsenicoxydans] emb|CAL61218.1| N utilization substance protein B homolog (Protein NusB) [Herminiimonas arsenicoxydans] Length = 156 Score = 251 bits (640), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 122/156 (78%), Positives = 135/156 (86%), Gaps = 1/156 (0%) Query: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 M+ KT HAN +KNRTPRHRAREFALQGLYQWLLN+ED IE HIR+AHGFDKADAEHFD Sbjct: 1 MTQKTDHANPSKNRTPRHRAREFALQGLYQWLLNNEDVRTIENHIRQAHGFDKADAEHFD 60 Query: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 LL G ++ +LRAGLAPLIDR I LSPVEHAALLIGA+EL+NHIEIPYKVVINEAVE Sbjct: 61 ALLYGTVKQVGELRAGLAPLIDREISALSPVEHAALLIGAFELKNHIEIPYKVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAAGRR 156 LTKSFGGIDGHKYVNGVLD+FAA R E+ +AGR+ Sbjct: 121 LTKSFGGIDGHKYVNGVLDKFAAGVREPEI-SAGRK 155 >ref|ZP_08273569.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] gb|EGF32966.1| Transcription termination protein NusB [Oxalobacteraceae bacterium IMCC9480] Length = 157 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/153 (75%), Positives = 132/153 (86%) Query: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 + K HAN NK+RTPRHR+REFALQGLYQWLLN+EDAG IEAH+REAHGFDKADA HFD Sbjct: 2 IPKKELHANPNKSRTPRHRSREFALQGLYQWLLNNEDAGVIEAHLREAHGFDKADAVHFD 61 Query: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 LL G I+ A+ LR L PLIDRP+ +LSP+EHA LLIGAYEL+NHIEIPYKV+INE+VE Sbjct: 62 ALLYGTIKQADALRTDLLPLIDRPLSQLSPIEHAILLIGAYELKNHIEIPYKVIINESVE 121 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEAA 153 L KSFGGIDGHKYVNGVLD+FAA+TR E+ A+ Sbjct: 122 LAKSFGGIDGHKYVNGVLDKFAAKTREVEIAAS 154 >ref|ZP_04579724.1| N utilization substance protein B [Oxalobacter formigenes OXCC13] gb|EEO30697.1| N utilization substance protein B [Oxalobacter formigenes OXCC13] Length = 156 Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 110/152 (72%), Positives = 128/152 (84%) Query: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 M + HAN +KNR+PRHR+REFALQGLY+WLLN +DA I HIR+AHGFDKAD HF Sbjct: 1 MKTTSVHANPSKNRSPRHRSREFALQGLYEWLLNRDDAPVIIEHIRQAHGFDKADTGHFV 60 Query: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 TLL+G+I A+KLR LAP IDRP++ELSPVEHA LL+GA+EL NHIEIPY+VVINEAVE Sbjct: 61 TLLSGSIHQADKLREELAPHIDRPLEELSPVEHAILLLGAFELSNHIEIPYRVVINEAVE 120 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEA 152 LTKSFGGIDGHK+VNGVLD+ AA+ R EVEA Sbjct: 121 LTKSFGGIDGHKFVNGVLDKLAAKLRPVEVEA 152 >ref|ZP_04577572.1| transcription termination [Oxalobacter formigenes HOxBLS] gb|EEO28534.1| transcription termination [Oxalobacter formigenes HOxBLS] Length = 159 Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 109/152 (71%), Positives = 127/152 (83%) Query: 1 MSNKTQHANSNKNRTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 M NK+ HAN +KNR+PRHR+REFALQGLY+WLLN +DA I HIR+AHGFDKAD HF Sbjct: 4 MKNKSVHANPSKNRSPRHRSREFALQGLYEWLLNKDDAPVIIEHIRQAHGFDKADTGHFV 63 Query: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 TL++G I AE LR+ + P IDR + ELSPVEHA LL+GAYEL+NHIEIPY+VVINEAVE Sbjct: 64 TLVSGTIHQAETLRSEIVPHIDRSLDELSPVEHAILLLGAYELKNHIEIPYRVVINEAVE 123 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEA 152 LTKSFGGIDGHK+VNGVLD+ AA+ R EVEA Sbjct: 124 LTKSFGGIDGHKFVNGVLDKIAAKLRPAEVEA 155 >ref|YP_002980677.1| transcription antitermination protein NusB [Ralstonia pickettii 12D] gb|ACS62005.1| NusB antitermination factor [Ralstonia pickettii 12D] Length = 155 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 95/152 (62%), Positives = 114/152 (75%), Gaps = 4/152 (2%) Query: 5 TQHANSNKNRTP----RHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFD 60 TQ + K + P R RARE ALQGLYQWLLN D G +EAH+++A GF+KAD HFD Sbjct: 2 TQDNSQAKTKAPAKSARRRARELALQGLYQWLLNRNDPGVVEAHLQDAQGFNKADRAHFD 61 Query: 61 TLLTGAIRDAEKLRAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVE 120 LL GAIR+ L P +DRP+ ELSPVE AALL+GAYEL + ++IPYKVVINEAVE Sbjct: 62 ALLHGAIREETTLTEAFTPYLDRPVAELSPVERAALLVGAYELVHCVDIPYKVVINEAVE 121 Query: 121 LTKSFGGIDGHKYVNGVLDRFAAQTRATEVEA 152 LTK+FGG++G+KYVNGVLD+ AAQ RA EV A Sbjct: 122 LTKTFGGVEGYKYVNGVLDKLAAQVRAVEVAA 153 >ref|YP_294992.1| transcription antitermination protein NusB [Ralstonia eutropha JMP134] sp|Q474N5.1|NUSB_CUPPJ RecName: Full=N utilization substance protein B homolog; Short=Protein NusB gb|AAZ60148.1| NusB antitermination factor [Ralstonia eutropha JMP134] Length = 167 Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 89/139 (64%), Positives = 114/139 (82%) Query: 14 RTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFDTLLTGAIRDAEKL 73 ++ R R+RE ALQGLYQWLLN D GAI+AH+ +A GF+KAD+EHFD LL GA+R+ +L Sbjct: 27 KSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADSEHFDALLNGAVREEARL 86 Query: 74 RAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELTKSFGGIDGHKY 133 A P +DR ++ELSPVE AALL+G+YEL + ++IPYKVVINEAVELTK+FGG++G+KY Sbjct: 87 TAAFEPFLDRKVEELSPVERAALLVGSYELVHCVDIPYKVVINEAVELTKTFGGVEGYKY 146 Query: 134 VNGVLDRFAAQTRATEVEA 152 VNGVLD+ AAQ R+ EV A Sbjct: 147 VNGVLDKLAAQVRSAEVAA 165 >ref|YP_004686550.1| N utilization substance protein NusB [Cupriavidus necator N-1] gb|AEI78069.1| N utilization substance protein NusB [Cupriavidus necator N-1] Length = 172 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 90/139 (64%), Positives = 112/139 (80%) Query: 14 RTPRHRAREFALQGLYQWLLNHEDAGAIEAHIREAHGFDKADAEHFDTLLTGAIRDAEKL 73 ++ R R+RE ALQGLYQWLLN D GAI+AH+ +A GF+KAD EHFD LL GA+R+ +L Sbjct: 32 KSARRRSRELALQGLYQWLLNRNDIGAIQAHLHDAQGFNKADREHFDALLNGAVREEARL 91 Query: 74 RAGLAPLIDRPIKELSPVEHAALLIGAYELQNHIEIPYKVVINEAVELTKSFGGIDGHKY 133 A P +DR + ELSPVE AALL+G+YEL + ++IPYKVVINEAVELTK+FGG++G+KY Sbjct: 92 TAAFEPFLDRTVNELSPVERAALLVGSYELVHCLDIPYKVVINEAVELTKTFGGVEGYKY 151 Query: 134 VNGVLDRFAAQTRATEVEA 152 VNGVLD+ AAQ RA EV A Sbjct: 152 VNGVLDKLAAQVRAAEVAA 170