BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0367.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775745.1| ferric regulator sigma-24 subunit [Herbaspir... 361 4e-98 ref|YP_412526.1| extracytoplasmic-function sigma-70 factor [Nitr... 178 4e-43 ref|NP_746360.1| extracytoplasmic-function sigma-70 factor [Pseu... 152 4e-35 ref|YP_001750414.1| extracytoplasmic-function sigma-70 factor [P... 148 5e-34 ref|YP_261282.1| extracytoplasmic-function sigma-70 factor [Pseu... 148 5e-34 ref|YP_004703058.1| extracytoplasmic-function sigma-70 factor [P... 147 6e-34 gb|AAB09714.1| PvdS [Pseudomonas aeruginosa] 147 8e-34 ref|YP_607461.1| extracytoplasmic-function sigma-70 factor [Pseu... 147 8e-34 gb|AAM45146.1|AF279913_1 PsbS [Pseudomonas sp. B10] 147 9e-34 dbj|BAE66604.1| putative RNA polymerase sigma-70 factor [Pseudom... 147 9e-34 >ref|YP_003775745.1| ferric regulator sigma-24 subunit [Herbaspirillum seropedicae SmR1] gb|ADJ63837.1| ferric regulator sigma-24 subunit protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 361 bits (926), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 177/178 (99%), Positives = 178/178 (100%) Query: 23 VNHTTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPDDFDIKQP 82 +NHTTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPDDFDIKQP Sbjct: 1 MNHTTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPDDFDIKQP 60 Query: 83 VAYLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALE 142 VAYLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALE Sbjct: 61 VAYLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALE 120 Query: 143 GLPARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNLLQNEPELAGS 200 GLPARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNLLQNEPELAGS Sbjct: 121 GLPARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNLLQNEPELAGS 178 >ref|YP_412526.1| extracytoplasmic-function sigma-70 factor [Nitrosospira multiformis ATCC 25196] gb|ABB75134.1| sigma-24 (FecI-like) [Nitrosospira multiformis ATCC 25196] Length = 169 Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 87/160 (54%), Positives = 116/160 (72%) Query: 34 LREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPDDFDIKQPVAYLYRIVRNL 93 L E F+ HR++LR A +ILG P RA+DVVQD ++K++E F +KQPVAYL+++VRNL Sbjct: 9 LSEVFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFHVKQPVAYLFQMVRNL 68 Query: 94 AIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGLPARTRRAFE 153 AID HRR +FE ++F E++GL V PEA ISR++L ++ +A+ LP RTRRAFE Sbjct: 69 AIDHHRRISFELNLFEGEDNGLHVPSHIGMPEATVISREHLKLVAKAISELPERTRRAFE 128 Query: 154 LYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNLLQN 193 L+RL G T R IAAEL IST+LVN +I +AL CR LQ+ Sbjct: 129 LHRLEGQTHRAIAAELAISTSLVNILIHEALDHCRAALQS 168 >ref|NP_746360.1| extracytoplasmic-function sigma-70 factor [Pseudomonas putida KT2440] gb|AAN69824.1|AE016622_1 ferric regulator PfrI [Pseudomonas putida KT2440] gb|ADR59282.1| PfrI [Pseudomonas putida BIRD-1] Length = 176 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 79/164 (48%), Positives = 109/164 (66%), Gaps = 1/164 (0%) Query: 26 TTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPD-DFDIKQPVA 84 +TS + L + F+++R+ L +A RI GC RA+DVVQD F +++ P K ++ Sbjct: 6 STSKCDSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLS 65 Query: 85 YLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGL 144 YL++IVRNLAID +R+ A E EE+G++V + SPEA I+R L+ I AL L Sbjct: 66 YLFQIVRNLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNEL 125 Query: 145 PARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCR 188 P RTR AFE+YRL+G+ Q++IA EL +S TLVNFMIRDAL CR Sbjct: 126 PPRTRYAFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCR 169 >ref|YP_001750414.1| extracytoplasmic-function sigma-70 factor [Pseudomonas putida W619] gb|ACA74045.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Pseudomonas putida W619] Length = 176 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 79/165 (47%), Positives = 105/165 (63%), Gaps = 1/165 (0%) Query: 26 TTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPD-DFDIKQPVA 84 +TS + L + F+++R+ L +A RI GC RA+DVVQD F ++ P K ++ Sbjct: 6 STSKCDSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLGAAPQITSSFKAQLS 65 Query: 85 YLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGL 144 YL++IVRNLAID +R+ A E EE+GL+V + SPEA I+ L I AL L Sbjct: 66 YLFQIVRNLAIDHYRKQAMELKYSGSEEEGLNVVIQNASPEATHINLAALEHIAEALNEL 125 Query: 145 PARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRN 189 P RTR AFE+YRL G+ Q++IA EL +S TLVNFMIRDAL CR Sbjct: 126 PQRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRK 170 >ref|YP_261282.1| extracytoplasmic-function sigma-70 factor [Pseudomonas fluorescens Pf-5] gb|AAY93446.1| RNA polymerase sigma-70 factor, ECF subfamily, PvdS [Pseudomonas fluorescens Pf-5] Length = 182 Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/172 (46%), Positives = 108/172 (62%), Gaps = 1/172 (0%) Query: 26 TTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPD-DFDIKQPVA 84 +TS + L + F+++R L +A RI GC RA+DVVQD F ++ P K ++ Sbjct: 6 STSRCDSPLLQAFVDNRLILVKIAARITGCRSRAEDVVQDAFFRLQSAPQITSSFKAQLS 65 Query: 85 YLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGL 144 YL++IVRNLAID +R+ A E EE+GL+V G SPE ++ L I AL L Sbjct: 66 YLFQIVRNLAIDHYRKQALEQKYSGTEEEGLNVVIHGASPETSHMNFSTLENIAEALTEL 125 Query: 145 PARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNLLQNEPE 196 P+RTR AFE+YRL G+ Q++IA EL +S TLVNFMIRDAL CR + N P+ Sbjct: 126 PSRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKVSGNRPD 177 >ref|YP_004703058.1| extracytoplasmic-function sigma-70 factor [Pseudomonas putida S16] gb|AEJ14178.1| extracytoplasmic-function sigma-70 factor [Pseudomonas putida S16] Length = 179 Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 79/165 (47%), Positives = 106/165 (64%), Gaps = 1/165 (0%) Query: 26 TTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPD-DFDIKQPVA 84 +TS + L + F+++R+ L +A RI GC RA+DVVQD F +++ P K ++ Sbjct: 9 STSKCDSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSAAPQITSSFKAQLS 68 Query: 85 YLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGL 144 YL++IVRNLAID +R+ A E EE+GL+V + SPEA I+ L I AL L Sbjct: 69 YLFQIVRNLAIDHYRKQAMELKYSGSEEEGLNVVVQNASPEATHINLAALDDIAEALNEL 128 Query: 145 PARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRN 189 P RTR AFE+YRL G+ Q++IA EL +S TLVNFMIRDAL CR Sbjct: 129 PQRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRK 173 >gb|AAB09714.1| PvdS [Pseudomonas aeruginosa] Length = 187 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 78/158 (49%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 34 LREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPD-DFDIKQPVAYLYRIVRN 92 L + F+++R L +A RI GC RA+DVVQD F ++ P K ++YL++IVRN Sbjct: 14 LLQAFVDNRTILVKIAARITGCRSRAEDVVQDAFFRLQSAPQITSSFKAQLSYLFQIVRN 73 Query: 93 LAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGLPARTRRAF 152 LAID +R+ A E EE+GL+V +G SPE I+ L I AL LP RTR AF Sbjct: 74 LAIDHYRKQALEQKYSGPEEEGLNVVIQGASPETSHINYATLEHIADALTELPKRTRYAF 133 Query: 153 ELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNL 190 E+YRL G+ Q++IA EL +STTLVNFMIRDAL CR + Sbjct: 134 EMYRLHGVPQKDIAKELGVSTTLVNFMIRDALVHCRKV 171 >ref|YP_607461.1| extracytoplasmic-function sigma-70 factor [Pseudomonas entomophila L48] emb|CAK14655.1| ferric regulator PfrI [Pseudomonas entomophila L48] Length = 175 Score = 147 bits (371), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 79/165 (47%), Positives = 106/165 (64%), Gaps = 1/165 (0%) Query: 26 TTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPD-DFDIKQPVA 84 +TS + L + F+++R+ L +A RI GC RA+DVVQD F +++ P K ++ Sbjct: 6 STSKCDSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSAAPQITSSFKAQLS 65 Query: 85 YLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGL 144 YL++IVRNLAID +R+ A E EE+GL+V + SPEA I+ L I AL L Sbjct: 66 YLFQIVRNLAIDHYRKQAMELKYSGSEEEGLNVVIQNASPEATHINLATLEHIADALNEL 125 Query: 145 PARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRN 189 P RTR AFE+YRL G+ Q++IA EL +S TLVNFMIRDAL CR Sbjct: 126 PQRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALIHCRK 170 >gb|AAM45146.1|AF279913_1 PsbS [Pseudomonas sp. B10] Length = 184 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/166 (48%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 26 TTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPD-DFDIKQPVA 84 +TS + L + F+++R L +A RI GC RA+DVVQD F ++ P IK ++ Sbjct: 6 STSRCDSPLLQAFVDNRLILVKIAARITGCRSRAEDVVQDAFFRLQSAPPITSSIKAQLS 65 Query: 85 YLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGL 144 YL++IVRNLAID +R+ A E EE+GL+V +G SPE I+ L I AL L Sbjct: 66 YLFQIVRNLAIDHYRKQALEQKYSAPEEEGLNVVIQGASPETSHINFSTLEHIADALTEL 125 Query: 145 PARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNL 190 P+RTR AFE+YRL G+ Q++IA EL +S TLVNFMIRDAL CR + Sbjct: 126 PSRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKV 171 >dbj|BAE66604.1| putative RNA polymerase sigma-70 factor [Pseudomonas sp. MIS38] Length = 184 Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/166 (48%), Positives = 107/166 (64%), Gaps = 1/166 (0%) Query: 26 TTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPD-DFDIKQPVA 84 +TS + L + F+++R L +A RI GC RA+DVVQD F ++ P IK ++ Sbjct: 6 STSRCDSPLLQAFVDNRLILVKIAARITGCRSRAEDVVQDAFFRLQSAPPITSSIKAQLS 65 Query: 85 YLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRALEGL 144 YL++IVRNLAID +R+ A E EE+GL+V +G SPE I+ L I AL L Sbjct: 66 YLFQIVRNLAIDHYRKQALEQKYSGPEEEGLNVVIQGASPETSHINFSTLEHIADALTEL 125 Query: 145 PARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNL 190 P+RTR AFE+YRL G+ Q++IA EL +S TLVNFMIRDAL CR + Sbjct: 126 PSRTRYAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKV 171