BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0363.p (105 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775741.1| hypothetical protein Hsero_2334 [Herbaspiril... 210 5e-53 ref|YP_980781.1| helix-turn-helix domain-containing protein [Pol... 125 1e-27 ref|YP_001566803.1| XRE family transcriptional regulator [Delfti... 121 3e-26 ref|YP_004154993.1| XRE family transcriptional regulator [Variov... 100 1e-19 ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacte... 99 2e-19 ref|YP_002943807.1| XRE family transcriptional regulator [Variov... 96 2e-18 ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandens... 90 1e-16 ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomalle... 89 2e-16 ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 2... 89 2e-16 ref|ZP_02451752.1| transcriptional regulator, XRE family protein... 89 2e-16 >ref|YP_003775741.1| hypothetical protein Hsero_2334 [Herbaspirillum seropedicae SmR1] gb|ADJ63833.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 105 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MRKPVRPARQADVEALSSALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGT 60 MRKPVRPARQADVEALSSALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGT Sbjct: 1 MRKPVRPARQADVEALSSALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGT 60 Query: 61 AIASLVTVEKLATALTLSPSALVTHGERIHQQNLVRGLQLMAIAC 105 AIASLVTVEKLATALTLSPSALVTHGERIHQQNLVRGLQLMAIAC Sbjct: 61 AIASLVTVEKLATALTLSPSALVTHGERIHQQNLVRGLQLMAIAC 105 >ref|YP_980781.1| helix-turn-helix domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM35860.1| helix-turn-helix domain protein [Polaromonas naphthalenivorans CJ2] Length = 90 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/86 (72%), Positives = 73/86 (84%) Query: 20 LVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATALTLSP 79 LV+ FGI +RQ R AR WSQE+LAE+SNLNRSY+GEIERG+AIASL TVEKLA AL +SP Sbjct: 5 LVECFGIALRQSREARNWSQEQLAEHSNLNRSYVGEIERGSAIASLATVEKLALALGISP 64 Query: 80 SALVTHGERIHQQNLVRGLQLMAIAC 105 SALV GE + Q N+VRG++LMAIAC Sbjct: 65 SALVGRGEAVSQANVVRGIRLMAIAC 90 >ref|YP_001566803.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] ref|YP_004486201.1| helix-turn-helix domain-containing protein [Delftia sp. Cs1-4] gb|ABX38418.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] gb|AEF87846.1| helix-turn-helix domain protein [Delftia sp. Cs1-4] Length = 90 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 61/90 (67%), Positives = 71/90 (78%) Query: 16 LSSALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATAL 75 +S+ LV SFGI VRQ R A GWSQERLAE+S+LNRSY+GEIERG IASL+TVEKLA +L Sbjct: 1 MSTRLVTSFGIAVRQAREAHGWSQERLAEHSDLNRSYVGEIERGRVIASLLTVEKLAVSL 60 Query: 76 TLSPSALVTHGERIHQQNLVRGLQLMAIAC 105 + PSALV GE + LVRGL+L AIAC Sbjct: 61 GVQPSALVMRGETVAHDQLVRGLRLAAIAC 90 >ref|YP_004154993.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU36882.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 89 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 49/87 (56%), Positives = 63/87 (72%) Query: 19 ALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATALTLS 78 A V+ FG+ VRQLR A GWSQE+LAE S+LNRSY+GE+ERG I S+VT +KLATAL ++ Sbjct: 3 AFVEDFGVTVRQLREANGWSQEQLAERSDLNRSYVGEVERGRVIPSIVTAQKLATALGIN 62 Query: 79 PSALVTHGERIHQQNLVRGLQLMAIAC 105 L+ E++ Q L R + L AIAC Sbjct: 63 IVNLLARCEQLEQSRLARRINLAAIAC 89 >ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacterium sp. Marseille] gb|ABR91133.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 109 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/88 (57%), Positives = 61/88 (69%) Query: 18 SALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATALTL 77 S L S G+ VRQLR A+GWSQE LAE + LNRSY+GE+ERG I SL+T++KLA+AL L Sbjct: 22 SKLCVSLGLAVRQLREAQGWSQEALAEKAQLNRSYVGEVERGKTIPSLITLDKLASALGL 81 Query: 78 SPSALVTHGERIHQQNLVRGLQLMAIAC 105 S L+ H ERI V L L AIAC Sbjct: 82 KVSDLLLHCERISGLQAVYKLNLAAIAC 109 >ref|YP_002943807.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gb|ACS18541.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 89 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/86 (52%), Positives = 60/86 (69%) Query: 20 LVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATALTLSP 79 V+ FG+ +RQLR +GWSQE LAE ++LNRSY+GE+ERG I S+VT KLA AL ++ Sbjct: 4 FVEDFGVTIRQLREGKGWSQEALAERADLNRSYVGEVERGRVIPSIVTAHKLAAALDINM 63 Query: 80 SALVTHGERIHQQNLVRGLQLMAIAC 105 L+ E++ Q LVR + L AIAC Sbjct: 64 VGLLLRCEQLEQSRLVRRINLAAIAC 89 >ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 95 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/67 (65%), Positives = 55/67 (82%) Query: 18 SALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATALTL 77 +ALVQ FG +RQLR AR WSQE+LAE++ LNRSY+GEIERGTAIAS+VTV+KLA A + Sbjct: 2 TALVQRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGV 61 Query: 78 SPSALVT 84 + L+T Sbjct: 62 PIARLLT 68 >ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomallei 305] ref|ZP_02407163.1| DNA-binding protein [Burkholderia pseudomallei DM98] ref|ZP_04521297.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gb|EBA46118.1| DNA-binding protein [Burkholderia pseudomallei 305] gb|EEP50211.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 94 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/58 (72%), Positives = 50/58 (86%) Query: 18 SALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATAL 75 +ALVQ FG +RQLR AR WSQE+LAE++ LNRSY+GEIERGTAIAS+VTV+KLA A Sbjct: 2 TALVQRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAF 59 >ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 23344] ref|YP_111353.1| DNA-binding protein [Burkholderia pseudomallei K96243] ref|ZP_00441000.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] ref|YP_335523.1| transcriptional regulator [Burkholderia pseudomallei 1710b] ref|YP_990060.1| DNA-binding protein [Burkholderia mallei SAVP1] ref|YP_001024022.1| DNA-binding protein [Burkholderia mallei NCTC 10229] ref|YP_001078595.1| DNA-binding protein [Burkholderia mallei NCTC 10247] ref|YP_001075854.1| DNA-binding protein [Burkholderia pseudomallei 1106a] ref|ZP_02265402.1| DNA-binding protein [Burkholderia mallei PRL-20] ref|ZP_02415673.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 14] ref|ZP_02459923.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 9] ref|ZP_02475414.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] ref|ZP_02485909.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 7894] ref|ZP_02494062.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei NCTC 13177] ref|ZP_02502309.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] ref|ZP_02510137.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] ref|ZP_03449985.1| DNA-binding protein [Burkholderia pseudomallei 576] ref|ZP_03794066.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] ref|ZP_04811919.1| DNA-binding protein [Burkholderia pseudomallei 1106b] ref|ZP_04880657.1| DNA-binding protein [Burkholderia mallei ATCC 10399] ref|ZP_04890315.1| DNA-binding protein [Burkholderia pseudomallei 1655] ref|ZP_04897706.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04899990.1| DNA-binding protein [Burkholderia pseudomallei S13] ref|ZP_04906773.1| DNA-binding protein [Burkholderia mallei FMH] ref|ZP_04910787.1| DNA-binding protein [Burkholderia mallei JHU] ref|ZP_04956471.1| DNA-binding protein [Burkholderia pseudomallei 1710a] ref|ZP_04972935.1| DNA-binding protein [Burkholderia mallei 2002721280] emb|CAH38814.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gb|AAU46112.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gb|ABA52830.1| possible transcriptional regulator, XRE family, CUPIN domain [Burkholderia pseudomallei 1710b] gb|ABM48932.1| DNA-binding protein [Burkholderia mallei SAVP1] gb|ABM99201.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gb|ABN93630.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gb|ABO01716.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gb|EDK55095.1| DNA-binding protein [Burkholderia mallei FMH] gb|EDK61084.1| DNA-binding protein [Burkholderia mallei JHU] gb|EDK83810.1| DNA-binding protein [Burkholderia mallei 2002721280] gb|EDO94544.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gb|EDP85011.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gb|EDS83002.1| DNA-binding protein [Burkholderia pseudomallei S13] gb|EDU11299.1| DNA-binding protein [Burkholderia pseudomallei 1655] gb|EEC37797.1| DNA-binding protein [Burkholderia pseudomallei 576] gb|EEH25442.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gb|EEP86784.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gb|EES22544.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gb|EES46583.1| DNA-binding protein [Burkholderia mallei PRL-20] gb|EET05993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 94 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/58 (72%), Positives = 50/58 (86%) Query: 18 SALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATAL 75 +ALVQ FG +RQLR AR WSQE+LAE++ LNRSY+GEIERGTAIAS+VTV+KLA A Sbjct: 2 TALVQRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAF 59 >ref|ZP_02451752.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 91] Length = 113 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/58 (72%), Positives = 50/58 (86%) Query: 18 SALVQSFGIGVRQLRRARGWSQERLAENSNLNRSYIGEIERGTAIASLVTVEKLATAL 75 +ALVQ FG +RQLR AR WSQE+LAE++ LNRSY+GEIERGTAIAS+VTV+KLA A Sbjct: 21 TALVQRFGAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAF 78