BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0338.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775717.1| cytochrome c oxidase polypeptide II precurso... 402 e-110 ref|ZP_02882962.1| cytochrome c oxidase subunit III [Burkholderi... 247 6e-64 ref|YP_001860947.1| cytochrome c oxidase, subunit I [Burkholderi... 231 6e-59 ref|YP_002942615.1| cytochrome C oxidase subunit I [Variovorax p... 226 1e-57 ref|YP_003909263.1| cytochrome c oxidase subunit III [Burkholder... 221 5e-56 ref|ZP_02883996.1| putative cytochrome c oxidase subunit I [Burk... 214 5e-54 ref|YP_004231827.1| cytochrome c oxidase subunit III [Burkholder... 210 1e-52 ref|ZP_06843782.1| cytochrome c oxidase, subunit I [Burkholderia... 208 3e-52 ref|YP_001637593.1| putative cytochrome c oxidase subunit III pr... 205 4e-51 ref|YP_555443.1| putative cytochrome c oxidase subunit I [Burkho... 204 6e-51 >ref|YP_003775717.1| cytochrome c oxidase polypeptide II precursor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63809.1| cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/200 (99%), Positives = 199/200 (99%) Query: 3 MKQPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDS 62 MKQPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDS Sbjct: 1 MKQPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDS 60 Query: 63 APPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFG 122 APPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEF Sbjct: 61 APPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFA 120 Query: 123 SLNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYW 182 SLNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYW Sbjct: 121 SLNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYW 180 Query: 183 YFVVISWLAIYAVIYWGPRF 202 YFVVISWLAIYAVIYWGPRF Sbjct: 181 YFVVISWLAIYAVIYWGPRF 200 >ref|ZP_02882962.1| cytochrome c oxidase subunit III [Burkholderia graminis C4D1M] gb|EDT11246.1| cytochrome c oxidase subunit III [Burkholderia graminis C4D1M] Length = 212 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 121/199 (60%), Positives = 143/199 (71%) Query: 4 KQPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSA 63 + + V LPT+GF S WW T+GL+ IE TVFA+ + YFYLR A WP ++ Sbjct: 14 RAARKAIHVGELPTYGFSHRSLMWWGTMGLMVIEGTVFAIAVMMYFYLRTLASVWPMNAP 73 Query: 64 PPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGS 123 P LLWGS+NT I+++S LPN+LA +AA R D RL L++CL FSL FLG R EF + Sbjct: 74 GPGLLWGSVNTAILVVSMLPNHLAKRAAEREDRAASRLWLLVCLAFSLAFLGVRALEFKA 133 Query: 124 LNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWY 183 LNV W NAYGS+ WML+GLHTVHLITDTFDT VL VL FTGPVE KRYVDVSEN YWY Sbjct: 134 LNVTWYDNAYGSVLWMLMGLHTVHLITDTFDTAVLDVLLFTGPVEGKRYVDVSENAAYWY 193 Query: 184 FVVISWLAIYAVIYWGPRF 202 FVV+SWL IYAV+YW PR Sbjct: 194 FVVLSWLPIYAVVYWAPRL 212 >ref|YP_001860947.1| cytochrome c oxidase, subunit I [Burkholderia phymatum STM815] gb|ACC73901.1| cytochrome c oxidase, subunit I [Burkholderia phymatum STM815] Length = 874 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 119/197 (60%), Positives = 142/197 (72%), Gaps = 1/197 (0%) Query: 5 QPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAP 64 QP+ TLDV LP+FGFG S WWAT GL+ IE TVFAL +A YFYLR +WP + P Sbjct: 676 QPS-TLDVRALPSFGFGARSLMWWATAGLMLIEGTVFALAVAVYFYLRTVNASWPMHAPP 734 Query: 65 PDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGSL 124 P LLWGSLNT +++LS +PN LA +AA++ + + RL L +C+ F+L+FL R EF +L Sbjct: 735 PSLLWGSLNTAVLILSVVPNELARRAANQGNRELARLWLAVCVGFALIFLVLRGFEFTAL 794 Query: 125 NVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWYF 184 NV W NAYGSI W LL LHT HLITDT DT VL VL +TGP E KR VD SEN YWYF Sbjct: 795 NVMWYANAYGSIVWTLLALHTTHLITDTVDTAVLAVLLYTGPYEGKRLVDTSENAFYWYF 854 Query: 185 VVISWLAIYAVIYWGPR 201 VV+SWL IYAVIY+ PR Sbjct: 855 VVLSWLPIYAVIYFAPR 871 >ref|YP_002942615.1| cytochrome C oxidase subunit I [Variovorax paradoxus S110] gb|ACS17349.1| putative cytochrome c oxidase subunit I [Variovorax paradoxus S110] Length = 201 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 120/200 (60%), Positives = 141/200 (70%) Query: 3 MKQPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDS 62 M P LDVS LP++ FG S WW T GLI IE T+FA+ I +Y YLR QA +WP + Sbjct: 1 MTAPRRELDVSALPSYAFGHRSLMWWGTFGLIAIEGTIFAIAIGAYLYLRSQADSWPLGA 60 Query: 63 APPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFG 122 PPDLLWGS NT+I+L S PN A +AA DL R R L++CLLF+L FL R EF Sbjct: 61 PPPDLLWGSANTLILLASIWPNQKAKRAAEARDLVRTRGWLLVCLLFALAFLVLRGFEFA 120 Query: 123 SLNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYW 182 +L+ W HNAYGS+ W LLGLHTVHL+TDT+DT VL VL FTGP+E +R+VDVSEN YW Sbjct: 121 ALHTRWDHNAYGSVVWTLLGLHTVHLLTDTYDTAVLDVLLFTGPMEGQRFVDVSENALYW 180 Query: 183 YFVVISWLAIYAVIYWGPRF 202 YFVV SWL IYAVIY PR Sbjct: 181 YFVVFSWLPIYAVIYGVPRL 200 >ref|YP_003909263.1| cytochrome c oxidase subunit III [Burkholderia sp. CCGE1003] gb|ADN59972.1| cytochrome c oxidase subunit III [Burkholderia sp. CCGE1003] Length = 216 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 120/197 (60%), Positives = 141/197 (71%) Query: 6 PAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAPP 65 PA LDV LP+FGFG S WW T+ L+ IE TVFA+ YFYLR WP ++APP Sbjct: 20 PALMLDVRHLPSFGFGHRSLMWWGTMCLMLIEGTVFAIAAMMYFYLRSLTARWPLNAAPP 79 Query: 66 DLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGSLN 125 +LLWG+ NTVI+L+S PN LA QAA R R RL L++CLLF+++FL R EF +LN Sbjct: 80 ELLWGTANTVILLVSMWPNQLAKQAADRQQRARARLWLIICLLFAVVFLVLRGFEFAALN 139 Query: 126 VNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWYFV 185 V+W NAYGS+ W+LLGLHT HLITD DT VL VL FTGP E KR+VDVSEN YWYFV Sbjct: 140 VSWYTNAYGSVVWLLLGLHTTHLITDAIDTAVLGVLLFTGPFEGKRFVDVSENAMYWYFV 199 Query: 186 VISWLAIYAVIYWGPRF 202 V+SWL IYAVIY PR Sbjct: 200 VLSWLPIYAVIYLAPRL 216 >ref|ZP_02883996.1| putative cytochrome c oxidase subunit I [Burkholderia graminis C4D1M] gb|EDT10656.1| putative cytochrome c oxidase subunit I [Burkholderia graminis C4D1M] Length = 216 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 119/197 (60%), Positives = 139/197 (70%) Query: 6 PAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAPP 65 PA LDV LP+FGFG S WW T+ L+ IE TVFA+ +YFYLR WP D+APP Sbjct: 20 PALMLDVRHLPSFGFGHRSLMWWGTVCLMLIEGTVFAIAAMAYFYLRSLTAHWPLDAAPP 79 Query: 66 DLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGSLN 125 LLWGS+NT ++LLS PN LA +AA R RL L +CLLF+++FL R EF +LN Sbjct: 80 ALLWGSVNTAVLLLSMWPNQLAKRAADCEQRGRARLWLAVCLLFAVVFLVIRGFEFAALN 139 Query: 126 VNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWYFV 185 V+W NAYGS+ W+LLGLHT HLITD DT VL VL FTGP E KR+VDVSEN YWYFV Sbjct: 140 VSWYANAYGSVVWLLLGLHTTHLITDAVDTAVLAVLLFTGPFEGKRFVDVSENALYWYFV 199 Query: 186 VISWLAIYAVIYWGPRF 202 V+SWL IYAVIY PR Sbjct: 200 VLSWLPIYAVIYLAPRL 216 >ref|YP_004231827.1| cytochrome c oxidase subunit III [Burkholderia sp. CCGE1001] gb|ADX58767.1| cytochrome c oxidase subunit III [Burkholderia sp. CCGE1001] Length = 216 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 120/197 (60%), Positives = 142/197 (72%) Query: 6 PAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAPP 65 PA LDV LP+FGFG S WWAT+ L+ IE TVFA+ +YFYLRG +WP ++APP Sbjct: 20 PALMLDVRHLPSFGFGHRSLMWWATMCLMLIEGTVFAIAAMAYFYLRGLTASWPLNAAPP 79 Query: 66 DLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGSLN 125 LLWG+ NT I+L+S PN LA +AA R D R RL L +CLLF+L FL R EF +LN Sbjct: 80 QLLWGTANTAILLVSMWPNQLAKRAADRQDRARSRLWLAVCLLFALAFLVLRAFEFAALN 139 Query: 126 VNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWYFV 185 V+W N+YGS+ W+LLGLHT HLITD DT VL VL FTGP + KR+VDVSEN YWYFV Sbjct: 140 VSWYTNSYGSVVWLLLGLHTTHLITDAVDTAVLAVLLFTGPFDGKRFVDVSENAMYWYFV 199 Query: 186 VISWLAIYAVIYWGPRF 202 V+SWL IYAVIY PR Sbjct: 200 VLSWLPIYAVIYLAPRL 216 >ref|ZP_06843782.1| cytochrome c oxidase, subunit I [Burkholderia sp. Ch1-1] gb|EFG68665.1| cytochrome c oxidase, subunit I [Burkholderia sp. Ch1-1] Length = 883 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/197 (59%), Positives = 138/197 (70%) Query: 5 QPAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAP 64 Q A+TL+V LP+FGF S WWAT GL+ IE TVFA+ +A YFYLRG AWP + P Sbjct: 684 QAASTLEVRQLPSFGFSHRSLMWWATAGLMAIEGTVFAIAVAMYFYLRGVNAAWPMHAPP 743 Query: 65 PDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGSL 124 P LLWG++NTVI+L S PN LA +AA R D R+ L +CL F++ FL R EF +L Sbjct: 744 PGLLWGTVNTVILLASLWPNQLAKRAAERGDRVGARIWLSVCLAFAVAFLVVRGFEFAAL 803 Query: 125 NVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWYF 184 NV W NAYGSI W+LLGLHT HLITDT DT VL L FTGP E KR +D SEN YWYF Sbjct: 804 NVMWYANAYGSIVWLLLGLHTTHLITDTVDTAVLAALLFTGPFEGKRLLDTSENAIYWYF 863 Query: 185 VVISWLAIYAVIYWGPR 201 VV+SWL IYAV+Y PR Sbjct: 864 VVLSWLPIYAVLYLAPR 880 >ref|YP_001637593.1| putative cytochrome c oxidase subunit III protein [Methylobacterium extorquens PA1] gb|ABY28522.1| putative cytochrome c oxidase subunit III protein [Methylobacterium extorquens PA1] Length = 216 Score = 205 bits (521), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 107/200 (53%), Positives = 127/200 (63%), Gaps = 4/200 (2%) Query: 6 PAATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSAPP 65 P D+S LPT+GFGP S WW TLG IE FAL +A+YFYL Q WP PP Sbjct: 16 PRVARDLSDLPTYGFGPKSPMWWGTLGFFIIEGMAFALALATYFYLVQQNAQWPLAPVPP 75 Query: 66 DLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGSLN 125 D G+LNT ++L S PN++A + AHR DL RVR LV+ L +L+ + R+ EF L Sbjct: 76 DHWVGTLNTALLLASLWPNFVADRDAHREDLTRVRRDLVIMSLIALVTVALRLYEFAGLG 135 Query: 126 VNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFT----GPVESKRYVDVSENGDY 181 V W NAYGSITW+LL LH HLITD DTLVLT L FT G + KR+ DVS+N Y Sbjct: 136 VRWDQNAYGSITWVLLALHLTHLITDAGDTLVLTALMFTRHAKGSAKGKRFSDVSDNAFY 195 Query: 182 WYFVVISWLAIYAVIYWGPR 201 WYFVV SWL IY +YW PR Sbjct: 196 WYFVVGSWLPIYLTVYWLPR 215 >ref|YP_555443.1| putative cytochrome c oxidase subunit I [Burkholderia xenovorans LB400] gb|ABE36093.1| Putative cytochrome c oxidase subunit I [Burkholderia xenovorans LB400] Length = 877 Score = 204 bits (519), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 114/198 (57%), Positives = 138/198 (69%), Gaps = 1/198 (0%) Query: 5 QPA-ATLDVSGLPTFGFGPASTTWWATLGLIFIESTVFALGIASYFYLRGQAPAWPPDSA 63 QP A LDV LP+FGF S WWAT GL+ IE TVFA+ + YFYLR AWP ++ Sbjct: 677 QPRLAVLDVRALPSFGFSHRSLMWWATAGLMLIEGTVFAMAVGMYFYLRTVNAAWPMNAP 736 Query: 64 PPDLLWGSLNTVIMLLSCLPNYLASQAAHRFDLQRVRLGLVLCLLFSLLFLGGRIGEFGS 123 PP L+WGSLNT +++ S PN LA +AA + +R RL L++CL F++ FL R EF + Sbjct: 737 PPSLVWGSLNTAVLVASLWPNQLARRAAENGERERARLWLLVCLAFAVAFLVVRGFEFAA 796 Query: 124 LNVNWSHNAYGSITWMLLGLHTVHLITDTFDTLVLTVLFFTGPVESKRYVDVSENGDYWY 183 LNV W N+YGSI W+LLGLHT HLITDT DT VL L +TGP E KR +D SEN YWY Sbjct: 797 LNVMWYANSYGSIVWLLLGLHTTHLITDTVDTAVLATLLYTGPFEKKRLLDTSENAVYWY 856 Query: 184 FVVISWLAIYAVIYWGPR 201 FVV+SWL IYAVIY+ PR Sbjct: 857 FVVLSWLPIYAVIYFVPR 874