BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0335.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775714.1| cytochrome c553 [Herbaspirillum seropedicae ... 543 e-153 ref|YP_004155311.1| cytochrome c class i [Variovorax paradoxus E... 230 2e-58 ref|YP_002943907.1| cytochrome C class I [Variovorax paradoxus S... 229 3e-58 ref|YP_004486119.1| cytochrome c class I [Delftia sp. Cs1-4] >gi... 221 1e-55 ref|YP_004416094.1| hypothetical protein PT7_0930 [Pusillimonas ... 218 1e-54 ref|YP_159597.1| di-heme cytochrome c [Aromatoleum aromaticum Eb... 211 1e-52 ref|YP_001631822.1| hypothetical protein Bpet3212 [Bordetella pe... 208 9e-52 ref|YP_004467189.1| hypothetical protein ambt_09305 [Alteromonas... 181 7e-44 ref|YP_004433708.1| hypothetical protein Glaag_1482 [Glaciecola ... 180 2e-43 ref|YP_847346.1| cytochrome c family protein [Syntrophobacter fu... 108 1e-21 >ref|YP_003775714.1| cytochrome c553 [Herbaspirillum seropedicae SmR1] gb|ADJ63806.1| cytochrome c553 (cytochrome c4) protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust. Identities = 268/269 (99%), Positives = 268/269 (99%) Query: 1 LRLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVA 60 LRLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVA Sbjct: 5 LRLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVA 64 Query: 61 PPQDAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIV 120 PPQDAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIV Sbjct: 65 PPQDAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIV 124 Query: 121 SNGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPASQTVSGNDADPTQLAGDIERGRI 180 SNGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPASQTVSGNDADPTQLAGDIERGRI Sbjct: 125 SNGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPASQTVSGNDADPTQLAGDIERGRI 184 Query: 181 ALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPG 240 ALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPG Sbjct: 185 ALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPG 244 Query: 241 GAMPELGVSAQDAADMAAYLRDADRGKPP 269 GAMPELGVSAQDAADMAAYLRDADRG PP Sbjct: 245 GAMPELGVSAQDAADMAAYLRDADRGNPP 273 >ref|YP_004155311.1| cytochrome c class i [Variovorax paradoxus EPS] gb|ADU37200.1| cytochrome c class I [Variovorax paradoxus EPS] Length = 288 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/264 (44%), Positives = 152/264 (57%), Gaps = 20/264 (7%) Query: 21 LVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVAPP-QDAAMSVRGAALYRQHC 79 +VW G YNV+A QH PV+ L+E AMRQSVR AR I P DA RGA +R C Sbjct: 25 MVWGGVYNVAATEQHTQPVYSLLETAMRQSVRLRARGIEPPDLADAQRVARGAGCFRDKC 84 Query: 80 LSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIVSNGVKMTGMPAWQNHLSEA 139 + CHGAPG+ G SMQP+PGPL DA +W RELYW+ +G+KM+GMPAW+ LS+ Sbjct: 85 VQCHGAPGVAQGDIGKSMQPLPGPLVDARQRWNARELYWVTKHGIKMSGMPAWEYRLSDE 144 Query: 140 QRWDIVAYLRAMPDLTP-------------------ASQTVSGNDADPTQLAGDIERGRI 180 W +VA+L+ +PD+TP A G A + ++ RG+ Sbjct: 145 DLWAVVAFLQRLPDMTPQQYAEASAPMLPAGQGAPAAPSCGPGVRAASAEKGDEVRRGQR 204 Query: 181 ALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPG 240 AL QYAC +CH IPG+ VGP L +A + + G L NT N+ RW+ H + P Sbjct: 205 ALYQYACNACHTIPGITSSFPNVGPPLDGMAKRSLIGGKLANTPDNMVRWLRHTREVDPL 264 Query: 241 GAMPELGVSAQDAADMAAYLRDAD 264 AMPE+GV+ QDA D+AAYL D Sbjct: 265 TAMPEMGVTEQDARDIAAYLATLD 288 >ref|YP_002943907.1| cytochrome C class I [Variovorax paradoxus S110] gb|ACS18641.1| cytochrome c class I [Variovorax paradoxus S110] Length = 293 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 121/280 (43%), Positives = 164/280 (58%), Gaps = 27/280 (9%) Query: 6 LTGVAAALLTLAAG-LLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVAPPQ- 63 LT A + +AAG L+V+ G Y+V+A QH+ PV+ ++E AMRQSV+ AR I PP+ Sbjct: 12 LTVAALGIAGVAAGALVVYGGLYDVAATQQHFQPVYSMLETAMRQSVKMRARNI-EPPRL 70 Query: 64 -DAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIVSN 122 D + +RGAA +R C+ CHGAPG+ G SMQP+PGPL DA H W+ RELYW+ + Sbjct: 71 DDERLVMRGAACFRDKCVQCHGAPGVAQGDIGKSMQPLPGPLVDARHHWKPRELYWLTKH 130 Query: 123 GVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPASQTVSGNDADPTQLAG--------- 173 G++M+GMPAW+ LSE W +VA++ +P+LTP Q +PT G Sbjct: 131 GIRMSGMPAWEFRLSEEDLWSVVAFMARLPELTP-QQYAEATRVEPTGAQGAQGAPARPA 189 Query: 174 -------------DIERGRIALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGAL 220 D +RG AL QYAC +CH IPG+ VGP LA + + ++G L Sbjct: 190 CGPADGAAPLRAADAQRGARALPQYACSACHTIPGITSSSPNVGPPLAGMGGRSLIAGKL 249 Query: 221 PNTAGNLARWIMHPKRYKPGGAMPELGVSAQDAADMAAYL 260 NT N+ RW+ H P AMP++ VS QDA D+AAYL Sbjct: 250 ANTPDNMVRWLRHTHEVDPLTAMPQMSVSEQDARDIAAYL 289 >ref|YP_004486119.1| cytochrome c class I [Delftia sp. Cs1-4] gb|AEF87764.1| cytochrome c class I [Delftia sp. Cs1-4] Length = 292 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/262 (46%), Positives = 156/262 (59%), Gaps = 24/262 (9%) Query: 22 VWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVAPPQ--DAAMSVRGAALYRQHC 79 V SG YNV+A QH PV++L++ AMRQSVR+HAR + PP+ D AM RGA YRQHC Sbjct: 28 VSSGVYNVAANRQHLKPVYQLLDIAMRQSVRYHARGL-EPPRAADEAMLARGAQCYRQHC 86 Query: 80 LSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIVSNGVKMTGMPAWQNHLSEA 139 + CHG PG+ AG MQP+PGPL DA +W +LYW+ NG+KMTGMP+W+ LSE Sbjct: 87 VQCHGGPGVAQGAAGQGMQPLPGPLIDATQRWNAGQLYWLTRNGLKMTGMPSWEFRLSED 146 Query: 140 QRWDIVAYLRAMPDLTP-------------ASQTVSGND------ADPTQLA--GDIERG 178 W +VA+++ MP L+P S +G D P Q GD RG Sbjct: 147 DLWAVVAFVQKMPQLSPPQFAAMAGQDWVVGSAGHAGRDDAFQPCRPPVQALRPGDAVRG 206 Query: 179 RIALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYK 238 + AL QYAC CH + G QVGP L +A + ++G L NT N+ RW++ K Sbjct: 207 QRALYQYACVGCHTVAGQAQASPQVGPPLDGMARRTRIAGVLDNTPDNMVRWLVQTDAVK 266 Query: 239 PGGAMPELGVSAQDAADMAAYL 260 PG AMP +GV+ QDA D+AAYL Sbjct: 267 PGTAMPAMGVAEQDARDIAAYL 288 >ref|YP_004416094.1| hypothetical protein PT7_0930 [Pusillimonas sp. T7-7] gb|AEC19470.1| hypothetical protein PT7_0930 [Pusillimonas sp. T7-7] Length = 286 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/254 (43%), Positives = 154/254 (60%), Gaps = 17/254 (6%) Query: 23 WSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVAPP-QDAAMSVRGAALYRQHCLS 81 +SG Y+VSA +QH V+ L++ +MR+SV+ A I AP DA +++G +R HC+ Sbjct: 28 YSGVYDVSATSQHTGAVYSLLQTSMRRSVKLRASEIQAPALDDADRAIQGFKHFRAHCVQ 87 Query: 82 CHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIVSNGVKMTGMPAWQNHLSEAQR 141 CHGAPG+ P L + P P L D+ +W E+YWI+ G+KM+GMPAWQ L + Q Sbjct: 88 CHGAPGVAPEPFALGLTPAPASLIDSAKEWSASEVYWIIRQGIKMSGMPAWQYRLGDEQI 147 Query: 142 WDIVAYLRAMPDLTPA---------------SQTVSGNDADPTQLAGDIERGRIALTQYA 186 WD+VA+++ +P L+PA S + +D +L GD G+ AL QY Sbjct: 148 WDVVAFMQVLPALSPADYEYWNVQHAPVAQLSNESAASDEHDARL-GDASAGKKALQQYL 206 Query: 187 CQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPGGAMPEL 246 C +CH IPGVVG D VGP+LA +A + Y++G LPNT N+ RW+ P P AMP+L Sbjct: 207 CITCHAIPGVVGADHHVGPSLAGMAGRTYIAGILPNTPANMLRWLRKPSEVDPLTAMPDL 266 Query: 247 GVSAQDAADMAAYL 260 VS QDA D+AA+L Sbjct: 267 NVSDQDARDIAAFL 280 >ref|YP_159597.1| di-heme cytochrome c [Aromatoleum aromaticum EbN1] emb|CAI08696.1| Di-heme cytochrome c (class I), probably related to cytochrome c oxidase function [Aromatoleum aromaticum EbN1] Length = 277 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 150/250 (60%), Gaps = 12/250 (4%) Query: 23 WSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVAPPQDAAMSVR-GAALYRQHCLS 81 + G+Y++SA QH +P ++L++ AMR+S++ A ++ P D ++ GA LYR HC Sbjct: 24 YGGFYDISATDQHLAPTYQLLDIAMRRSIKLRAASVTVPSLDTIGALEHGAPLYRDHCAQ 83 Query: 82 CHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIVSNGVKMTGMPAWQNHLSEAQR 141 CHGAPG+ P L + P LA W E+YW+V +G+KMTGMPAW+ L+E++ Sbjct: 84 CHGAPGVAPEPFALGLTPAAANLAHTGRAWPPEEIYWVVRHGLKMTGMPAWEQRLTESEL 143 Query: 142 WDIVAYLRAMPDLTPAS-----------QTVSGNDADPTQLAGDIERGRIALTQYACQSC 190 W + A+++ +P+L+P + +P D ERGR + QYAC +C Sbjct: 144 WAVTAFVKRLPELSPPDYRRLVADLPPHDHTQDHRGEPAPQRPDAERGRRIIQQYACATC 203 Query: 191 HRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKRYKPGGAMPELGVSA 250 HRIPGVVGPD VGP L + ++ +++GAL N ++ RW+ P+ P AMP+LGV Sbjct: 204 HRIPGVVGPDAPVGPPLDGIGTRAFIAGALRNEPAHMVRWLRSPQEVTPDSAMPDLGVDE 263 Query: 251 QDAADMAAYL 260 +DA D+AAYL Sbjct: 264 RDAHDIAAYL 273 >ref|YP_001631822.1| hypothetical protein Bpet3212 [Bordetella petrii DSM 12804] emb|CAP43554.1| hypothetical protein predicted by Glimmer/Critica [Bordetella petrii] Length = 297 Score = 208 bits (529), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 106/269 (39%), Positives = 149/269 (55%), Gaps = 25/269 (9%) Query: 22 VWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVAPP-QDAAMSVRGAALYRQHCL 80 V+SGWY+ SA H +P+ +M+ A+++S+ A + PP D ++ G L+R HC+ Sbjct: 27 VYSGWYDSSATHPHTAPMNSVMDVALQRSISVRAARVSVPPLDDPQQAIDGFRLFRAHCV 86 Query: 81 SCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIVSNGVKMTGMPAWQNHLSEAQ 140 CHGAPG+PP + + P P L D W E+YW+V G+KMTGMPAWQ +S+ Sbjct: 87 QCHGAPGVPPEPFAMGLMPPPASLVDTARHWPAAEVYWVVRQGIKMTGMPAWQYRISDED 146 Query: 141 RWDIVAYLRAMPDLTPASQTVSGNDADPTQLA------------------------GDIE 176 W++VA++R +P L+PA V + + + GD + Sbjct: 147 IWNVVAFMRVLPTLSPADYQVWDSRYVRPEASSEPAPAVASAPAPAAASPAAEPRLGDAQ 206 Query: 177 RGRIALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYVSGALPNTAGNLARWIMHPKR 236 GR AL QY C +CH IPGVVG + VGP L +A Q Y++G LPNT N+ RW+ P Sbjct: 207 AGRQALQQYLCVTCHAIPGVVGANYHVGPPLGGVAQQRYIAGILPNTPANMVRWLRDPPA 266 Query: 237 YKPGGAMPELGVSAQDAADMAAYLRDADR 265 P AMP LG+S QDA D+AA+L D Sbjct: 267 IDPATAMPNLGISEQDARDIAAFLYTLDE 295 >ref|YP_004467189.1| hypothetical protein ambt_09305 [Alteromonas sp. SN2] gb|AEF03387.1| hypothetical protein ambt_09305 [Alteromonas sp. SN2] Length = 300 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 148/286 (51%), Gaps = 27/286 (9%) Query: 2 RLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVAP 61 R +L GV AL+ LV+ G YNVSA+ H +PV+K +E+A Q+V AR Sbjct: 12 RFYSLAGVVLALIAAVIFSLVYFGVYNVSALTGHTTPVYKFLEHARIQAV--DARVDEQV 69 Query: 62 PQDAAMSVRGAAL--YRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWI 119 P + + L Y++HC++CHGAPG+ P L M P P + + ELYW+ Sbjct: 70 PDLTLFDWQRSGLKNYQRHCIACHGAPGVAPEPFSLGMMPPPSAIVRVAGQRSPAELYWV 129 Query: 120 VSNGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPAS--------------QTVSGND 165 + NG+KM+GMPAW+ L++ + W++VA ++ +P L+ A ++V N Sbjct: 130 IENGIKMSGMPAWKYRLTQEELWELVALVKVLPTLSKAEYAQLADHNFAIEGVESVLANQ 189 Query: 166 ADPTQL---------AGDIERGRIALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHYV 216 D T + A G++A+ QY C SCH I G+ VGP L ++ ++ ++ Sbjct: 190 QDETAIMQSSLAEPRATQALSGQVAMQQYNCSSCHVIDGIASASYHVGPPLNNMVNRRFI 249 Query: 217 SGALPNTAGNLARWIMHPKRYKPGGAMPELGVSAQDAADMAAYLRD 262 +G LP T NL +WIM P +KP MP L V A M YL + Sbjct: 250 AGTLPTTRENLIQWIMDPPHFKPQSLMPNLRVKRNHAEAMVDYLYE 295 >ref|YP_004433708.1| hypothetical protein Glaag_1482 [Glaciecola agarilytica 4H-3-7+YE-5] gb|AEE22440.1| hypothetical protein Glaag_1482 [Glaciecola sp. 4H-3-7+YE-5] Length = 306 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/285 (34%), Positives = 149/285 (52%), Gaps = 26/285 (9%) Query: 2 RLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVAP 61 + ++ +A L+ LV+ G YNVSA+ H +PV+K +E+A Q+V V Sbjct: 12 KFYSIAALALFLIGALIFSLVYFGVYNVSALTGHTTPVYKFLEHARIQAVDARIDDEVPD 71 Query: 62 PQDAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRELYWIVS 121 G A Y++HC++CHGAPG+ P L M P P + + EL+W++ Sbjct: 72 LSTFNWQTSGIANYKRHCVACHGAPGVAPEPFSLGMMPPPSAIVRVARQRSPAELFWVIE 131 Query: 122 NGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDLTPAS-------QTVSGND--------- 165 NG+KM+GMPAW+ LS+ ++W++VA L+ +P L+ + T +G++ Sbjct: 132 NGIKMSGMPAWKYRLSDDEQWELVALLKKLPTLSKSEYAQLAQKSTGTGSNKPIKDILSQ 191 Query: 166 -------ADPT---QLAGDIERGRIALTQYACQSCHRIPGVVGPDTQVGPALAHLASQHY 215 A PT Q AG+ G++A+ QY C SCH I G+ VGP L ++ ++ + Sbjct: 192 TPEEQALAKPTSTQQSAGEALSGQVAMQQYNCSSCHVIDGIASATYHVGPPLNNMVNRRF 251 Query: 216 VSGALPNTAGNLARWIMHPKRYKPGGAMPELGVSAQDAADMAAYL 260 ++G LP T NL +WIM+P +KP MP L V A M YL Sbjct: 252 IAGTLPTTRENLIQWIMNPPHFKPQSLMPNLHVKRHHAEVMVDYL 296 >ref|YP_847346.1| cytochrome c family protein [Syntrophobacter fumaroxidans MPOB] gb|ABK18911.1| cytochrome c family protein [Syntrophobacter fumaroxidans MPOB] Length = 174 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 1 LRLLALTGVAAALLTLAAGLLVWSGWYNVSAVAQHWSPVFKLMEYAMRQSVRHHARAIVA 60 +R+++ + V ++ A L W GWYNV+A HW +E +S+ H+R I Sbjct: 1 MRMVSKSIVWFLIVAGGAALFAWQGWYNVAANVPHWDATVTAIELIRDRSIEAHSRGISV 60 Query: 61 PP-QDAAMSVRGAALYRQHCLSCHGAPGLPPATAGLSMQPVPGPLADAEHKWEDRE--LY 117 P DA + GA Y + C CHGAPG+P A + P P LA + + +E ++ Sbjct: 61 PALDDARLVSDGARTYDEVCRYCHGAPGVPSAVFAQGLYPAPANLASDAFRRDFKEARVF 120 Query: 118 WIVSNGVKMTGMPAWQNHLSEAQRWDIVAYLRAMPDL 154 W++ NG+KMTGMPA+ + + + W VA+++ +P + Sbjct: 121 WVIKNGIKMTGMPAFGSFFEDVELWAAVAFVKRLPGI 157