BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0325.p         (567 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775706.1| methyl-accepting chemotaxis transducer trans...  1074   0.0  
gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis pr...   683   0.0  
ref|YP_004215574.1| methyl-accepting chemotaxis sensory transduc...   664   0.0  
ref|YP_003743272.1| methyl-accepting chemotaxis protein [Erwinia...   603   e-170
ref|YP_003929953.1| methyl-accepting chemotaxis serine transduce...   592   e-167
ref|ZP_07377299.1| methyl-accepting chemotaxis sensory transduce...   592   e-167
ref|YP_004114731.1| methyl-accepting chemotaxis sensory transduc...   590   e-166
ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbasp...   461   e-127
ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin...   457   e-126
ref|YP_004695867.1| methyl-accepting chemotaxis sensory transduc...   448   e-123

>ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63798.1| methyl-accepting chemotaxis transducer transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 581

 Score = 1074 bits (2778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/549 (99%), Positives = 546/549 (99%)

Query: 1   MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60
           MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL
Sbjct: 1   MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60

Query: 61  RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120
           RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA
Sbjct: 61  RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120

Query: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180
           LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE
Sbjct: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180

Query: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240
           GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI
Sbjct: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240

Query: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300
           EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS
Sbjct: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300

Query: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360
           LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI
Sbjct: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360

Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420
           VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI
Sbjct: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420

Query: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480
           ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD
Sbjct: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480

Query: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAPAPT 540
           EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAPAPT
Sbjct: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAPAPT 540

Query: 541 ASRAPGQHP 549
           ASRAP   P
Sbjct: 541 ASRAPTARP 549


>gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis protein I [Rahnella aquatilis]
          Length = 554

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/545 (64%), Positives = 439/545 (80%), Gaps = 3/545 (0%)

Query: 1   MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60
           MF    N++V  RL A F+ ++ LL +VSVTA  KI++IN +I+QI++DRY+KVR AFD+
Sbjct: 1   MFKAINNMRVGARLGAAFSLVILLLIIVSVTAVTKISSINSSIEQIISDRYVKVRLAFDV 60

Query: 61  RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120
           RDGVN+QIKYLRGI ID +N   N KR+ QL+ +VKQT  A+DKI A Q T VG++K KA
Sbjct: 61  RDGVNDQIKYLRGIVIDTKNPEQNNKRYLQLDDSVKQTNLAMDKIAAIQTTVVGKQKIKA 120

Query: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180
           L +A   F+A+K   +AL +AG+   A E+VLRK+T +QN YL LA AFA+SQD QLQAE
Sbjct: 121 LQDASDIFEAAKEQLVALARAGDMDGATEFVLRKLTTSQNAYLDLASAFANSQDQQLQAE 180

Query: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240
           G KA+ADG  AI++TL  S+ A+L A  LG+ + RSI +PL  AV+VAENVAAGDLTT+I
Sbjct: 181 GKKAIADGHNAIQLTLIFSVLAILVAAALGFFLTRSITRPLHTAVKVAENVAAGDLTTQI 240

Query: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300
           +  S DETGQLMQ L+ MN+NL++IV+ VR GT +I +ASGEIA+GNLDLS+RTEQQA S
Sbjct: 241 QVTSGDETGQLMQGLKNMNENLLKIVTEVRAGTNAIHSASGEIAAGNLDLSSRTEQQASS 300

Query: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360
           LEETASAME+MT+TV+QNADNARQANQ+A  AS +A+QGG++VG VV+TM+ IN SSRKI
Sbjct: 301 LEETASAMEQMTATVKQNADNARQANQLAAQASRVAVQGGEVVGEVVNTMEGINASSRKI 360

Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420
           VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI
Sbjct: 361 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLI 420

Query: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480
            DSV KV+ G+ LVA+AG+TM +VVSSV+SVTDIV EI+ AS EQS+GIEEIN+A+TQMD
Sbjct: 421 DDSVAKVDNGTQLVAKAGSTMAEVVSSVKSVTDIVGEIAIASNEQSTGIEEINKAITQMD 480

Query: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAPAPT 540
           E TQQNAALV++A++AA S+ EQA RL+Q+ISIFK+  G+A+   A VR A     PA  
Sbjct: 481 EVTQQNAALVQEASSAAYSLNEQAERLSQAISIFKVSAGSAT---AAVRKAAHAKTPALL 537

Query: 541 ASRAP 545
           ++R P
Sbjct: 538 SNRQP 542


>ref|YP_004215574.1| methyl-accepting chemotaxis sensory transducer [Rahnella sp. Y9602]
 gb|ADW76447.1| methyl-accepting chemotaxis sensory transducer [Rahnella sp. Y9602]
          Length = 554

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/545 (63%), Positives = 434/545 (79%), Gaps = 3/545 (0%)

Query: 1   MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60
           MF    N++V  RL A F+ ++ LL +VS  A  KI++IN +I+QI++DRY+KVR AFD+
Sbjct: 1   MFKLINNMRVGARLGAAFSLVILLLVIVSGIAITKISSINTSIEQIISDRYVKVRLAFDV 60

Query: 61  RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120
           RDGVN+QIKYLRGI ID +N   N+KR+ QL+  VK+T  A+DKI A Q T  G++K K 
Sbjct: 61  RDGVNDQIKYLRGIVIDTKNPEQNKKRYLQLDDTVKKTNLAMDKIAAIQSTVTGKQKIKT 120

Query: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180
           L EA   F+ +K   +AL +AG+   A E+VLRK+T +QN YL LA AFA+SQD QLQAE
Sbjct: 121 LQEAGETFETAKEQLIALARAGDMDGATEFVLRKLTTSQNAYLDLATAFANSQDQQLQAE 180

Query: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240
           G  A+ADGA AI++TL  S  A+L A  LGY + RSI +PL  AV+VAENVAAGDLTT+I
Sbjct: 181 GKTAIADGATAIQLTLIFSALAILMAAALGYFLTRSITRPLHTAVKVAENVAAGDLTTQI 240

Query: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300
           +  S+DETGQLMQ L+ MN+NL++IV+ VR GT +IT+AS EIA+GNLDLS+RTEQQA S
Sbjct: 241 QVMSQDETGQLMQGLKNMNENLLKIVTEVRAGTNAITSASSEIAAGNLDLSSRTEQQASS 300

Query: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360
           LEETASAME+MT+TV+QNADNARQAN +A  AS +A+QGG++VG VV+TM+ IN SSRKI
Sbjct: 301 LEETASAMEQMTATVKQNADNARQANLLAAQASRVAVQGGEVVGEVVNTMEGINTSSRKI 360

Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420
           VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI
Sbjct: 361 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLI 420

Query: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480
            DSV KV+ G+ LVA+AGATM +VVSSV++VTDIV EI+ AS EQS+GIEEIN+A+TQMD
Sbjct: 421 DDSVAKVDNGTQLVAKAGATMAEVVSSVKNVTDIVGEIAIASNEQSTGIEEINKAITQMD 480

Query: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAPAPT 540
           E TQQNAALV++A++AA S+ EQA RL+Q+ISIFK+  G+A+   A VR A    +PA  
Sbjct: 481 EVTQQNAALVQEASSAAYSLNEQAERLSQAISIFKVSAGSAT---AAVRKAGQTKSPALL 537

Query: 541 ASRAP 545
           ++R P
Sbjct: 538 SNRQP 542


>ref|YP_003743272.1| methyl-accepting chemotaxis protein [Erwinia billingiae Eb661]
 emb|CAX61425.1| methyl-accepting chemotaxis protein [Erwinia billingiae Eb661]
          Length = 526

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 325/515 (63%), Positives = 401/515 (77%)

Query: 2   FAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLR 61
            A  KN+KV VRL A F+ ++ LL +VSVTA +KIN IN A+  IV+DRY+KVR AFD+R
Sbjct: 1   MASVKNMKVGVRLGAAFSLVILLLIIVSVTAVVKINTINDAVSSIVSDRYIKVRLAFDVR 60

Query: 62  DGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKAL 121
           DGVN+QIK+LRG+ ID      N KRF QL  A  +T  A+ KI   Q T VG KK +A+
Sbjct: 61  DGVNDQIKFLRGMVIDTTRPQYNVKRFGQLTDATDKTNLAVGKIAQLQTTPVGIKKIQAV 120

Query: 122 DEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEG 181
            EA   F+ +K+  L +++AG    A E+ L+K+T  QN YL LA AFADSQ  QL AEG
Sbjct: 121 KEAAQTFETAKSTLLEMIRAGKQDEAAEFALQKMTPAQNTYLNLASAFADSQSQQLVAEG 180

Query: 182 AKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIE 241
           A A  +G  AI++TL  S  A+LAA++LGY +ARSIV+PL EAV +AENVAAGDL T I 
Sbjct: 181 ALAGTEGNSAIQITLIFSALAILAAVLLGYFLARSIVRPLREAVTIAENVAAGDLRTVIR 240

Query: 242 PHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSL 301
            +S DETGQLMQAL+ MN+NL+ IV+ VR GT+ I  AS EI++GN+DLS+RTEQQA SL
Sbjct: 241 VNSTDETGQLMQALKHMNENLLRIVTEVRSGTDLIHNASSEISAGNMDLSSRTEQQASSL 300

Query: 302 EETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIV 361
           EETASAME+MTSTV+QNADNARQAN++A  AS++A Q G  V +VV TM+ IN SSRKIV
Sbjct: 301 EETASAMEQMTSTVKQNADNARQANELAALASKVASQSGDAVKQVVSTMEMINGSSRKIV 360

Query: 362 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIA 421
           DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEI  LI 
Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIAQLIE 420

Query: 422 DSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDE 481
           DSV KV+ G   VA+AG TME+V+SSV+SVT I+ EIS AS+EQS+GI EI+ A+TQMD+
Sbjct: 421 DSVSKVDEGGKQVAKAGTTMEEVLSSVKSVTAIMGEISIASSEQSTGINEISMAITQMDQ 480

Query: 482 GTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL 516
            TQQNAALV Q+A+AA+S+QEQA +L+++IS+FK+
Sbjct: 481 VTQQNAALVNQSASAAQSLQEQAEQLSRAISVFKV 515


>ref|YP_003929953.1| methyl-accepting chemotaxis serine transducer [Pantoea vagans C9-1]
 gb|ADO08504.1| Methyl-accepting chemotaxis serine transducer [Pantoea vagans C9-1]
          Length = 525

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 310/515 (60%), Positives = 402/515 (78%), Gaps = 3/515 (0%)

Query: 1   MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60
           MF+  KN+KV +RLAA F  IV LL V+ VT+  +IN+IN AI  IV+DRY+KVR AFD+
Sbjct: 1   MFS-IKNMKVGMRLAAAFGIIVTLLIVIGVTSITRINSINTAISSIVDDRYVKVRLAFDV 59

Query: 61  RDGVNEQIKYLRGIAIDIENRP-ANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAK 119
           RDGVN+QIKYLRG+ ID  NRP  N KR+ QL+ A ++T  A+ KI   QVT VG+KK  
Sbjct: 60  RDGVNDQIKYLRGMVID-TNRPEMNVKRYGQLDEATQRTNIAMKKIEDIQVTPVGKKKIA 118

Query: 120 ALDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQA 179
            L  +  AF+  K + + L+KAGN  +A  YVL+ +T TQN +L  A  FA+SQD+QL++
Sbjct: 119 GLLASSQAFEQVKTELIGLIKAGNFDAASAYVLKSMTATQNKFLQDAVNFANSQDSQLRS 178

Query: 180 EGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTR 239
           EG   V +G  AI +TL  S  A+LAAI+LGY + RSIV+PL  AV VAE VAAGDL+T+
Sbjct: 179 EGQGIVENGQSAITITLIFSALAILAAIMLGYFLTRSIVRPLVAAVDVAERVAAGDLSTQ 238

Query: 240 IEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAG 299
           ++  SRDETG LMQAL++MNDNL+ IV+ VR G+++I  AS +I+SGNLDLS RTEQQA 
Sbjct: 239 MQVTSRDETGVLMQALQRMNDNLLSIVTEVRTGSDTIAVASNQISSGNLDLSTRTEQQAS 298

Query: 300 SLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRK 359
           SLEETASAME+MTSTV+ NADNAR+AN +  + S +A +GG ++ +V+  M+ I  SSRK
Sbjct: 299 SLEETASAMEQMTSTVKHNADNAREANHLVSTTSSVAREGGVVMEKVIEKMEAIALSSRK 358

Query: 360 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKAL 419
           IVDII VID IAFQTNIL+LNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK L
Sbjct: 359 IVDIISVIDSIAFQTNILSLNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVL 418

Query: 420 IADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQM 479
           I DSV KV+ GS LV  AG+T+ +VV+SV+SV +I++EI+ AS+EQSSGI EIN+A+TQM
Sbjct: 419 IEDSVAKVDEGSKLVTHAGSTIGEVVNSVQSVANIMSEITIASSEQSSGINEINQAITQM 478

Query: 480 DEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIF 514
           +  TQQNAALV++A+AA++++Q+QA R+ Q++S+F
Sbjct: 479 EAVTQQNAALVQEASAASQALQDQAERMAQAMSVF 513


>ref|ZP_07377299.1| methyl-accepting chemotaxis sensory transducer [Pantoea sp. aB]
 gb|EFM21074.1| methyl-accepting chemotaxis sensory transducer [Pantoea sp. aB]
          Length = 525

 Score =  592 bits (1525), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 307/514 (59%), Positives = 400/514 (77%), Gaps = 1/514 (0%)

Query: 1   MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60
           MF+  +N+KV +RLAA F  IV LL V+ VT+  +INNIN AI  IV+DRY+KVR AFD+
Sbjct: 1   MFS-IRNMKVGMRLAAAFGIIVTLLIVIGVTSITRINNINTAISSIVDDRYVKVRLAFDV 59

Query: 61  RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120
           RDGVN+QIKYLRG+ ID  +   N KR+ QL+ A ++T  A+ +I   QVT +G+KK   
Sbjct: 60  RDGVNDQIKYLRGMVIDTTHPENNVKRYGQLDEATQRTNRAMKRIEDIQVTPIGKKKIAG 119

Query: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180
           L  +  AF+  KA+ + LVKAGN  +A  YVL+ +T TQN +L  A  FA+SQDAQL+ E
Sbjct: 120 LLASSQAFEKVKAELITLVKAGNFDAASIYVLKSMTATQNKFLQDAVDFANSQDAQLRTE 179

Query: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240
           G   V +G  AI +TL  S  A+LA+I+LGY + RSIV+PL  AV VAE VAAGDL+T++
Sbjct: 180 GQGIVENGQSAISITLIFSALAILASIMLGYFLTRSIVRPLVAAVDVAERVAAGDLSTQM 239

Query: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300
           +  SRDETG LMQAL++MNDNL+ IV+ VR G+++I  AS +I+SGNLDLS RTEQQA S
Sbjct: 240 QVTSRDETGVLMQALQRMNDNLLSIVTEVRTGSDTIAVASTQISSGNLDLSTRTEQQASS 299

Query: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360
           LEETASAME+MTSTV+ NADNAR+AN +  + S +A +GG ++ +V+  M+ I  SSRKI
Sbjct: 300 LEETASAMEQMTSTVKHNADNAREANHLVSTTSSVAREGGVVMEQVIEKMEAIALSSRKI 359

Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420
           VDII VID IAFQTNIL+LNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI
Sbjct: 360 VDIISVIDSIAFQTNILSLNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLI 419

Query: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480
            DSV KV+ GS LV  AG+T+ +VV+SV+SV +I++EI+ AS+EQSSGI EIN+A+TQM+
Sbjct: 420 EDSVAKVDEGSKLVTHAGSTIGEVVNSVQSVANIMSEITIASSEQSSGIHEINQAITQME 479

Query: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIF 514
             TQQNAALV++A+AA++++Q+QA R+ Q++S+F
Sbjct: 480 AVTQQNAALVQEASAASQALQDQAERMAQAMSVF 513


>ref|YP_004114731.1| methyl-accepting chemotaxis sensory transducer [Pantoea sp. At-9b]
 gb|ADU68175.1| methyl-accepting chemotaxis sensory transducer [Pantoea sp. At-9b]
          Length = 524

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 316/516 (61%), Positives = 400/516 (77%), Gaps = 2/516 (0%)

Query: 5   FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64
           FKNLKV VRL   F  +VALL VV +T+  KI+NI   I  IV DRY+KVR A+D+RDGV
Sbjct: 4   FKNLKVGVRLGIAFGLVVALLVVVGITSITKISNIKNGITSIVEDRYVKVRLAYDVRDGV 63

Query: 65  NEQIKYLRGIAIDIENRPANE-KRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDE 123
           N+QIKYLRGI ID  +RP N  KRF QL  A  +T  A+ KI A Q+TAVG+KK   L +
Sbjct: 64  NDQIKYLRGIVIDT-HRPENNVKRFQQLAEATDRTNSAMKKIEAIQITAVGKKKIAGLLD 122

Query: 124 ARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAK 183
           A   F+  K   +ALVK+G+  ++  +VL+KITDTQN YL  A AFA SQ  QLQ EG  
Sbjct: 123 ASHLFEQQKDQLVALVKSGDLEASSTFVLKKITDTQNTYLDSANAFAASQSEQLQNEGIS 182

Query: 184 AVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPH 243
            +ADG+ AI VTL  S  A++A+IILG+L+ RSIV+PL EAV +A  VAAGDL+T IE  
Sbjct: 183 IIADGSTAIMVTLIFSAVAIVASIILGFLLTRSIVRPLNEAVEIAGKVAAGDLSTHIEVK 242

Query: 244 SRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEE 303
           S DETG LM+AL+ MNDNL+ IV+ VR G+++I  AS +I+SGNLDLS+RTEQQA SLEE
Sbjct: 243 STDETGVLMRALQSMNDNLLTIVTDVRAGSDTIAVASNQISSGNLDLSSRTEQQASSLEE 302

Query: 304 TASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDI 363
           TASAME+MTSTV+ NA+NAR+AN++  + S++A +GG ++ +V+  M+ I  SS+KIVDI
Sbjct: 303 TASAMEQMTSTVKHNAENAREANKLVANTSDVAKEGGVVMEQVIEKMEAIALSSKKIVDI 362

Query: 364 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADS 423
           I VID IAFQTNIL+LNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI DS
Sbjct: 363 ISVIDSIAFQTNILSLNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLIEDS 422

Query: 424 VGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGT 483
           V KV+ GS LV+ AG+T+ +VV+SV+SV DI++EI+ AS+EQSSGI EIN A+TQM+  T
Sbjct: 423 VAKVDEGSRLVSHAGSTIGEVVNSVKSVADIMSEITIASSEQSSGISEINLAITQMEAVT 482

Query: 484 QQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQG 519
           QQNAALV++A+AA++++QEQA RL QS+S+FK   G
Sbjct: 483 QQNAALVQEASAASQALQEQAERLAQSMSVFKTGHG 518


>ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62877.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae
           SmR1]
          Length = 576

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 287/544 (52%), Positives = 373/544 (68%), Gaps = 4/544 (0%)

Query: 5   FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64
             ++K++VRL A FA ++ ++ V++      +  ++ A D+IVNDRY+KV     + D V
Sbjct: 4   ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63

Query: 65  NEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEA 124
           N   + LR  AI   N    +K   +++    Q  E L ++  R  T  G +   AL +A
Sbjct: 64  NTGARSLRN-AIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQA 122

Query: 125 RIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKA 184
           R  +   +   + L+       A  ++  K    Q+ Y A  +     Q + +     +A
Sbjct: 123 RADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAERA 182

Query: 185 VADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHS 244
            A  + AI + L  S  AVL + +   L+ RSI +PL EAV+VA  VAAGDLT +IE  S
Sbjct: 183 SAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATS 242

Query: 245 RDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEET 304
           +DETG L+ AL+ MNDNL  IV+ VR GT++I TAS EIA+GNLDLS+RTEQQAG+LEET
Sbjct: 243 KDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEET 302

Query: 305 ASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDII 364
           ASAMEE+TSTVRQNADNARQAN +A +AS++A+QGG +VG VV TM +IN +SRKIVDII
Sbjct: 303 ASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDII 362

Query: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSV 424
            VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK+LI  SV
Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASV 422

Query: 425 GKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQ 484
            +VE GS LV QAGATME+VV+SV+ VTD+VAEI+AAS EQS GIE+IN+A+ QMDE TQ
Sbjct: 423 ERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQ 482

Query: 485 QNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIP---AAPVRTALAPAAPAPTA 541
           QNAALVEQAAAAA+S+QEQ+ RL+ ++ IF+L    A  P   +APV+ ++  A   P  
Sbjct: 483 QNAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPLSAPVQRSVQVAPARPVL 542

Query: 542 SRAP 545
           +R P
Sbjct: 543 ARKP 546


>ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp.
           Marseille]
 gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp.
           Marseille]
          Length = 571

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 276/534 (51%), Positives = 365/534 (68%), Gaps = 4/534 (0%)

Query: 5   FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64
            KNLK+  RL+  F  +V LL V++  AF +I  +N AI ++  DRY K   A  ++D +
Sbjct: 1   MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60

Query: 65  NEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEA 124
           N+  + +R  A+ +  + A +    Q+  A      AL ++     +  G++    L   
Sbjct: 61  NQIARNMRN-ALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQAD 119

Query: 125 RIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKA 184
           R  F   K DF+ L  AG    A   +  ++   Q +YLA      D Q+  ++  GA+A
Sbjct: 120 RSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEA 179

Query: 185 VADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHS 244
            A  +    +    S+ AVL A +   L  RSI +PL++AV +A  VA GDLT  I   S
Sbjct: 180 NAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVES 239

Query: 245 RDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEET 304
           +DETGQL+QAL+ MN+ L++IV+ VR GT++I +AS +IA+GNLDLS+RTEQQA SLEET
Sbjct: 240 KDETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEET 299

Query: 305 ASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDII 364
           AS+MEE+TSTV+QNA+NARQ+NQ+A+SASE+A++GG +V +VV TM EIN S++KIVDII
Sbjct: 300 ASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDII 359

Query: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSV 424
           GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI DSV
Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSV 419

Query: 425 GKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQ 484
            KV  GS LV  AGATM +VV SV+ VTDI++EI+AAS EQ+ GIE+IN+AV QMD+ TQ
Sbjct: 420 DKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQ 479

Query: 485 QNAALVEQAAAAAKSMQEQAVRLTQSISIFKLE-QGAASIPAAPVRTALAPAAP 537
           QNAALVE+AAAAA+S+Q QA  L+Q + +FKL+  G   + A P  T  AP  P
Sbjct: 480 QNAALVEEAAAAAESLQGQASHLSQVVGVFKLDGHGTTVVNAVPTYT--APEQP 531


>ref|YP_004695867.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp.
           Is79A3]
 ref|YP_004695874.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp.
           Is79A3]
 gb|AEJ02468.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp.
           Is79A3]
 gb|AEJ02475.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp.
           Is79A3]
          Length = 575

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 290/548 (52%), Positives = 363/548 (66%), Gaps = 16/548 (2%)

Query: 5   FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64
           F N+ +  RL  V + +  LL  +       IN  N  +  +  DR +       + D V
Sbjct: 2   FNNMTIKSRLMFVISMLSLLLVGIGSLGLYGINQSNAGLKSVYEDRTVPAVQLGKILD-V 60

Query: 65  NEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEA 124
              ++     A   +N    + R  +    VKQ +    +  A ++T      AK   E 
Sbjct: 61  WHLVRRNATEAAQAKNVDVAKARGEEALKLVKQNEAVWAQFMATKLTTEEAALAKTKGEQ 120

Query: 125 RIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKA 184
            + +  S    L L  AG   +A    L   TD    + AL     D+  A L  +G  A
Sbjct: 121 HVQYVESLNRTLQLASAGEFEAA---ALNASTDAMQKFNALR----DTVFALLDLQGTAA 173

Query: 185 VADGAMA-------IEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLT 237
             + A A          ++   +  V  AII+G+L+ R+IV PL EA+ VA  VAAGDLT
Sbjct: 174 AQEYATAQNHYENIFMTSVVVMILGVSLAIIVGFLLIRAIVGPLNEAIAVANAVAAGDLT 233

Query: 238 TRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQ 297
           +RIE +S +ETG+L+QALR MNDNL ++V  VR GT+SITTASGEIASGNLDLS RTE+Q
Sbjct: 234 SRIEANSTNETGRLLQALRTMNDNLADLVGKVRMGTDSITTASGEIASGNLDLSQRTEEQ 293

Query: 298 AGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSS 357
           A SLEETAS+MEE+TSTVRQNADNARQANQ+A  ASE+A++GG +VG+VV TM  IN+SS
Sbjct: 294 ASSLEETASSMEELTSTVRQNADNARQANQLAAGASEVAVKGGAVVGQVVQTMSSINESS 353

Query: 358 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIK 417
           +KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAAAKEIK
Sbjct: 354 KKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIK 413

Query: 418 ALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVT 477
            LI+DSV KVE G+ LV +AGATM+++VS+V+ VTDI+AEISAAS EQSSGIE++N+AVT
Sbjct: 414 ELISDSVSKVEDGTRLVDEAGATMDEIVSAVKRVTDIMAEISAASQEQSSGIEQVNQAVT 473

Query: 478 QMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGAASIPAAPVRTALAPAAP 537
           QMDE TQQNAALVE+AAAAA+SMQEQA  LTQ++S FKL  G +  P  PV+ +  PA  
Sbjct: 474 QMDEVTQQNAALVEEAAAAAESMQEQAQTLTQAVSTFKLSGGGSHTP-TPVKRSNRPATV 532

Query: 538 APTASRAP 545
           A   +R P
Sbjct: 533 AKLPNRGP 540