BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0324.p (130 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775705.1| sugar ABC transporter auxiliary component pr... 257 3e-67 ref|ZP_08273304.1| Ribose ABC transport system, high affinity pe... 182 2e-44 ref|YP_004754742.1| ribose ABC transport system, high affinity p... 180 7e-44 ref|YP_001669714.1| D-ribose pyranase [Pseudomonas putida GB-1] ... 160 5e-38 ref|ZP_05640219.1| D-ribose pyranase [Pseudomonas syringae pv. t... 160 8e-38 ref|YP_004701471.1| D-ribose pyranase [Pseudomonas putida S16] >... 159 1e-37 ref|ZP_04589482.1| D-ribose pyranase [Pseudomonas syringae pv. o... 159 1e-37 ref|YP_235237.1| D-ribose pyranase [Pseudomonas syringae pv. syr... 159 2e-37 ref|ZP_06456596.1| D-ribose pyranase [Pseudomonas syringae pv. a... 158 2e-37 gb|EGH55634.1| D-ribose pyranase [Pseudomonas syringae Cit 7] 158 2e-37 >ref|YP_003775705.1| sugar ABC transporter auxiliary component protein [Herbaspirillum seropedicae SmR1] gb|ADJ63797.1| ABC-type sugar transport system, auxiliary component protein [Herbaspirillum seropedicae SmR1] Length = 130 Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 128/130 (98%), Positives = 130/130 (100%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVP+IDLAVTRGVPGFLTVLETVLS Sbjct: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPVIDLAVTRGVPGFLTVLETVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHENFKEQTRRARAVIRTGECTPYA 120 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHE+FKEQTRRARAVIRTGECTPYA Sbjct: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHESFKEQTRRARAVIRTGECTPYA 120 Query: 121 NIILGSGVVF 130 NIILGSGVVF Sbjct: 121 NIILGSGVVF 130 >ref|ZP_08273304.1| Ribose ABC transport system, high affinity permease RbsD [Oxalobacteraceae bacterium IMCC9480] gb|EGF33231.1| Ribose ABC transport system, high affinity permease RbsD [Oxalobacteraceae bacterium IMCC9480] Length = 130 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 84/130 (64%), Positives = 107/130 (82%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+SQ+IA++GHGD +VIGD GLPVPPGVPLIDLA+TRG+PG L L +L+ Sbjct: 1 MKKTPLLNIALSQLIASLGHGDAIVIGDAGLPVPPGVPLIDLALTRGIPGLLDTLRAILT 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHENFKEQTRRARAVIRTGECTPYA 120 E+QVE HV+A ELA SP +A+ I AL+L G+ ++SH +FK+ TR ARA++RTGECTPYA Sbjct: 61 EMQVEQHVLASELALHSPAMASAIAALDLPGRLTMSHADFKQTTRSARAIVRTGECTPYA 120 Query: 121 NIILGSGVVF 130 NI+L +GV F Sbjct: 121 NIVLVAGVAF 130 >ref|YP_004754742.1| ribose ABC transport system, high affinity permease RbsD [Collimonas fungivorans Ter331] gb|AEK63919.1| Ribose ABC transport system, high affinity permease RbsD [Collimonas fungivorans Ter331] Length = 136 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 86/130 (66%), Positives = 107/130 (82%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKK+ LLN A+SQ+IA++GHG+++VIGD GLPVPPGVPLIDLA+TRGVPGF+ L+T+++ Sbjct: 7 MKKSPLLNIALSQLIASLGHGESIVIGDAGLPVPPGVPLIDLALTRGVPGFMDTLQTIMT 66 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHENFKEQTRRARAVIRTGECTPYA 120 E+QVE HV+ADEL SP LA QI AL L KR++ H +FK T A+AVIRTGE TPYA Sbjct: 67 EMQVEHHVLADELPLHSPQLAQQIEALGLVDKRTLPHADFKRMTHSAKAVIRTGEFTPYA 126 Query: 121 NIILGSGVVF 130 NIIL +GVVF Sbjct: 127 NIILVAGVVF 136 >ref|YP_001669714.1| D-ribose pyranase [Pseudomonas putida GB-1] sp|B0KKS4.1|RBSD_PSEPG RecName: Full=D-ribose pyranase gb|ABY99378.1| RbsD or FucU transport [Pseudomonas putida GB-1] Length = 132 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 83/132 (62%), Positives = 99/132 (75%), Gaps = 2/132 (1%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA MGHGD LVIGD GLPVPPGV +IDLAVT G+P F +VL VLS Sbjct: 1 MKKTPLLNVALSRVIAGMGHGDILVIGDAGLPVPPGVEMIDLAVTPGLPDFASVLRAVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL--ELAGKRSVSHENFKEQTRRARAVIRTGECTP 118 ELQVE HV+A+E+ +V P +I L +L + +SHENFK +R ARAV+RTGEC P Sbjct: 61 ELQVERHVLAEEMQKVVPPALVEIERLKGKLGKREWLSHENFKVLSRSARAVVRTGECQP 120 Query: 119 YANIILGSGVVF 130 Y+NI L SGV F Sbjct: 121 YSNIALISGVTF 132 >ref|ZP_05640219.1| D-ribose pyranase [Pseudomonas syringae pv. tabaci ATCC 11528] ref|ZP_07004752.1| ribose ABC transport system, high affinity permease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gb|EFH99841.1| ribose ABC transport system, high affinity permease [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gb|EGH25121.1| D-ribose pyranase [Pseudomonas syringae pv. mori str. 301020] gb|EGH87350.1| D-ribose pyranase [Pseudomonas syringae pv. lachrymans str. M301315] gb|EGH90564.1| D-ribose pyranase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 134 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 79/134 (58%), Positives = 104/134 (77%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVP GV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFVSVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A+E+A+V P I +L +L +R +SHE+ K +R+ARA+IRTGEC Sbjct: 61 EMQVESHVLANEMAEVKPPALQVIESLNLDDQLGQQRWISHEDLKVLSRKARAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNVALVSGVVF 134 >ref|YP_004701471.1| D-ribose pyranase [Pseudomonas putida S16] gb|AEJ12591.1| D-ribose pyranase [Pseudomonas putida S16] Length = 132 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/132 (64%), Positives = 99/132 (75%), Gaps = 2/132 (1%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+ IA MGHGD LVIGD GLPVPPGV LIDLAVT G+P F +VL VLS Sbjct: 1 MKKTPLLNVALSRTIAGMGHGDILVIGDAGLPVPPGVELIDLAVTPGLPDFASVLRVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALE-LAGKRS-VSHENFKEQTRRARAVIRTGECTP 118 ELQVE HV+A+E+ +V P +I L+ GKR +SHE+FK TR ARAV+RTGEC P Sbjct: 61 ELQVERHVLAEEMQKVVPPALVEIERLKGKVGKREWLSHEDFKALTRSARAVVRTGECQP 120 Query: 119 YANIILGSGVVF 130 Y+NI L SGV F Sbjct: 121 YSNIALISGVTF 132 >ref|ZP_04589482.1| D-ribose pyranase [Pseudomonas syringae pv. oryzae str. 1_6] gb|EGI03935.1| D-ribose pyranase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 134 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/134 (58%), Positives = 103/134 (76%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVPPGV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPPGVELIDLALTRGVPDFVSVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A E+A++ P I +L +L +R +SHE+ K +R A+A+IRTGEC Sbjct: 61 EMQVESHVLASEMAEIKPPALQIIESLNLDDQLGQQRWISHEDLKALSRTAKAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNLALVSGVVF 134 >ref|YP_235237.1| D-ribose pyranase [Pseudomonas syringae pv. syringae B728a] sp|Q4ZUH3.1|RBSD_PSEU2 RecName: Full=D-ribose pyranase gb|AAY37199.1| RbsD or FucU transport [Pseudomonas syringae pv. syringae B728a] Length = 134 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/134 (58%), Positives = 104/134 (77%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVP GV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFISVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A+E+A+V P I +L +L +R +SHE+ K +R+A+A+IRTGEC Sbjct: 61 EMQVESHVLANEMAEVKPPALQVIESLNLEDQLGQQRWISHEDLKVLSRKAKAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNVALVSGVVF 134 >ref|ZP_06456596.1| D-ribose pyranase [Pseudomonas syringae pv. aesculi str. NCPPB3681] ref|ZP_06478483.1| D-ribose pyranase [Pseudomonas syringae pv. aesculi str. 2250] gb|EGH02398.1| D-ribose pyranase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 134 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/134 (58%), Positives = 103/134 (76%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVP GV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFVSVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A E+A++ P I +L +L +R +SHE+ K +R+ARA+IRTGEC Sbjct: 61 EMQVESHVLASEMAEIKPPALQVIESLNLDDQLGQQRWISHEDLKVLSRKARAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNVALVSGVVF 134 >gb|EGH55634.1| D-ribose pyranase [Pseudomonas syringae Cit 7] Length = 134 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/134 (57%), Positives = 104/134 (77%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVP GV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFISVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A+E+A++ P I +L +L +R +SHE+ K +R+A+A+IRTGEC Sbjct: 61 EMQVESHVLANEMAEIKPPALQVIESLNLDDQLGQQRWISHEDLKVLSRKAKAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNVALVSGVVF 134