BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0322.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775703.1| transcription regulator DNA-binding represso... 680 0.0 ref|YP_004754744.1| ribose operon repressor [Collimonas fungivor... 429 e-118 ref|ZP_08273306.1| Ribose operon repressor [Oxalobacteraceae bac... 399 e-109 ref|YP_607596.1| ribose operon repressor RbsR [Pseudomonas entom... 349 3e-94 ref|YP_002873707.1| putative ribose operon repressor [Pseudomona... 349 4e-94 gb|ADR60820.1| RbsR [Pseudomonas putida BIRD-1] 348 1e-93 ref|YP_001268543.1| alanine racemase [Pseudomonas putida F1] >gi... 345 6e-93 ref|ZP_07776449.1| transcriptional regulator, LacI family [Pseud... 345 7e-93 ref|NP_744605.1| ribose operon repressor [Pseudomonas putida KT2... 345 7e-93 ref|YP_347654.1| LacI family transcription regulator [Pseudomona... 343 2e-92 >ref|YP_003775703.1| transcription regulator DNA-binding repressor protein [Herbaspirillum seropedicae SmR1] gb|ADJ63795.1| transcription regulator DNA-binding repressor protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/337 (100%), Positives = 337/337 (100%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG Sbjct: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI Sbjct: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 Query: 121 IATLNQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVACI 180 IATLNQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVACI Sbjct: 121 IATLNQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVACI 180 Query: 181 AGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQRPD 240 AGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQRPD Sbjct: 181 AGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQRPD 240 Query: 241 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLT 300 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLT Sbjct: 241 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLT 300 Query: 301 AQFLLERIADPSLPARRETVAPQLQLRGSTAPRVNPT 337 AQFLLERIADPSLPARRETVAPQLQLRGSTAPRVNPT Sbjct: 301 AQFLLERIADPSLPARRETVAPQLQLRGSTAPRVNPT 337 >ref|YP_004754744.1| ribose operon repressor [Collimonas fungivorans Ter331] gb|AEK63921.1| Ribose operon repressor [Collimonas fungivorans Ter331] Length = 335 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 229/332 (68%), Positives = 261/332 (78%), Gaps = 2/332 (0%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVAR AGVSYTTVSHVLNQTRPVS+DAR RVLAAV+ + YVPSALARSL+SK TG Sbjct: 1 MATIKDVARTAGVSYTTVSHVLNQTRPVSADARARVLAAVEAMAYVPSALARSLKSKATG 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 SIGLIIPNNTNPYFSE+ARGIED CY AGYSVILCNSDDDP KQRDYL VL TK CDGLI Sbjct: 61 SIGLIIPNNTNPYFSEVARGIEDSCYTAGYSVILCNSDDDPAKQRDYLNVLLTKRCDGLI 120 Query: 121 IATLNQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVACI 180 +ATL Q D K+ +PTVLLDRAPK++ IDLV+ DNA GG+LAA HLL L R R+ACI Sbjct: 121 VATLAQTDGELLRKMKVPTVLLDRAPKDMAIDLVAVDNAAGGALAAAHLLSLGRRRIACI 180 Query: 181 AGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQ--GRPADQR 238 GP + +S ER+ G RQTL G+ L + L +ADF+ GGY AA LL Q Sbjct: 181 GGPQDIAISRERIGGLRQTLLAAGVTLPEPLLAYADFTSAGGYLAARSLLARFASVPSQA 240 Query: 239 PDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGN 298 PDAIFCCND+MAIG LRAA E I VP L+VVGFDDI+LAQFVHP LT+VAQNTR+LG Sbjct: 241 PDAIFCCNDLMAIGALRAAAEFGIAVPEALAVVGFDDIDLAQFVHPTLTSVAQNTRRLGQ 300 Query: 299 LTAQFLLERIADPSLPARRETVAPQLQLRGST 330 LTA+ LL+RIA P P +R ++AP+L +RGST Sbjct: 301 LTAECLLQRIATPDRPLQRLSIAPELHIRGST 332 >ref|ZP_08273306.1| Ribose operon repressor [Oxalobacteraceae bacterium IMCC9480] gb|EGF33233.1| Ribose operon repressor [Oxalobacteraceae bacterium IMCC9480] Length = 332 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 212/330 (64%), Positives = 250/330 (75%), Gaps = 1/330 (0%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIK VA++AGVS+TTVSHV+N TRPVS+DAR RVLAA+ +L YVPSALARSL+S+ TG Sbjct: 1 MATIKQVAQVAGVSFTTVSHVINLTRPVSADARARVLAAIAQLHYVPSALARSLKSQRTG 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 +IGLIIPNNTNPYFSE+ARGIEDHCYGAGYSVILCN DDP +QR+YL VL K CDGLI Sbjct: 61 TIGLIIPNNTNPYFSEVARGIEDHCYGAGYSVILCNFGDDPARQRNYLNVLLGKRCDGLI 120 Query: 121 IATLNQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVACI 180 +A L AD IP VLLDRAP+ D+V DN GG LAA+HLL L R R+ACI Sbjct: 121 MAALAPADGELLHTKKIPVVLLDRAPRGQSFDVVDVDNVAGGVLAAQHLLALGRRRIACI 180 Query: 181 AGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQRPD 240 GP + LS R+ G R TL + GL LA + +ADF+ +GGYQ A LL A QRPD Sbjct: 181 GGPQEITLSRLRLDGLRATLAEAGLPLAPALCRYADFTSMGGYQQARALLALP-AAQRPD 239 Query: 241 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLT 300 AIFCCND+MAIGVLRAA E I VP L+VVGFDDI+LA+FV+P L++VAQNTR LG LT Sbjct: 240 AIFCCNDLMAIGVLRAAAEAGIAVPQALAVVGFDDIDLARFVYPALSSVAQNTRALGQLT 299 Query: 301 AQFLLERIADPSLPARRETVAPQLQLRGST 330 AQ LL RIA+P LP ++ T+ P L +R S+ Sbjct: 300 AQCLLARIANPDLPLQQHTMTPALHVRESS 329 >ref|YP_607596.1| ribose operon repressor RbsR [Pseudomonas entomophila L48] emb|CAK14790.1| putative ribose operon repressor RbsR [Pseudomonas entomophila L48] Length = 340 Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 186/336 (55%), Positives = 237/336 (70%), Gaps = 7/336 (2%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHVLN+TRPVS R +V AA+ ELDYVPSA+ARSL+++ T Sbjct: 1 MATIKDVAALAGISYTTVSHVLNKTRPVSEHVRLKVEAAIAELDYVPSAVARSLKARSTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 +IGL++PN+ NPYF+ELARGIED C GY VILCNSDD+P KQR YL+VL K DGLI Sbjct: 61 TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLI 120 Query: 121 IATL--NQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVA 178 +A++ +Q L+ G + P V++DRA + DLV D+ G LA RHLL+L +A Sbjct: 121 VASVGEDQDLLDSLGGVRTPMVIVDRALDGVAADLVRIDHEHGAYLATRHLLELGHREIA 180 Query: 179 CIAGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQR 238 IAGP +S R+ GFR+ + + G+A+A +LH+DF+ GG+ AA RLL G +R Sbjct: 181 TIAGPADTGVSQLRLAGFRRAMAEAGVAVAKGHVLHSDFTSPGGHAAAARLLDG----ER 236 Query: 239 PDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGN 298 P AIF NDM+ GVLRAA E I+VPGELSV+GFDDIEL+++V+P LTTV Q+ R+LG Sbjct: 237 PTAIFAANDMIGFGVLRAAAERNIDVPGELSVIGFDDIELSRYVYPALTTVGQSIRELGE 296 Query: 299 LTAQFLLERI-ADPSLPARRETVAPQLQLRGSTAPR 333 A LL RI A A + VAP++ LR ST PR Sbjct: 297 SAAGLLLSRIGARQHEGAEQRIVAPRIVLRESTGPR 332 >ref|YP_002873707.1| putative ribose operon repressor [Pseudomonas fluorescens SBW25] emb|CAY50659.1| putative ribose operon repressor [Pseudomonas fluorescens SBW25] Length = 340 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 178/335 (53%), Positives = 232/335 (69%), Gaps = 7/335 (2%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHV+N+TRPVS R +V AA+K+LDYVPSA+ARSL++K T Sbjct: 1 MATIKDVAALAGISYTTVSHVVNKTRPVSEPVRIKVEAAIKQLDYVPSAVARSLKAKTTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 +IGL++PN+ NPYF+ELARGIED+C GY VILCNSDD+ +KQR YL+VL K DGLI Sbjct: 61 TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNAEKQRSYLRVLLEKRIDGLI 120 Query: 121 IATLNQADLNPAGKLD---IPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRV 177 + ++ D A L P V++DRA +D+DLV D+ G LA RHLL+L + Sbjct: 121 VTSVGGDDSGLAAGLSAVRTPMVIVDRALDGIDVDLVRIDHEEGAYLATRHLLELGHRDI 180 Query: 178 ACIAGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQ 237 ACI GP ++ R+ G+ + L++ G+A+A + +DF+ GGY AA++LL P Sbjct: 181 ACIGGPAHTRVAQMRLAGYHRALQEAGVAVAANRTQESDFTSTGGYTAAVQLLANNP--- 237 Query: 238 RPDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLG 297 P AIF NDM+ GVLRAA E I VPGELSV+GFDDI++ ++V+P LTTV Q+ +LG Sbjct: 238 -PSAIFASNDMIGFGVLRAAAERNIRVPGELSVIGFDDIQMGRYVYPALTTVGQSIVQLG 296 Query: 298 NLTAQFLLERIADPSLPARRETVAPQLQLRGSTAP 332 A+ LL RIA P LP + V P + LR STAP Sbjct: 297 ETAAELLLRRIATPQLPIDQRIVTPSIVLRESTAP 331 >gb|ADR60820.1| RbsR [Pseudomonas putida BIRD-1] Length = 340 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 183/336 (54%), Positives = 234/336 (69%), Gaps = 7/336 (2%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHVLN+TRPVS R +V AA+ ELDYVPSA+ARSL+++ T Sbjct: 1 MATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 +IGL++PN+ NPYF+ELARGIED C GY VILCNSDD+P KQR YL+VL K DGL+ Sbjct: 61 TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120 Query: 121 IATLNQAD--LNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVA 178 +A++ Q D L + P V++DR + +D DLV D+ G LA RHLL+L VA Sbjct: 121 VASVGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVA 180 Query: 179 CIAGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQR 238 I GP ++ R+ GFR+ + + G + S +LH DF+ GG+ AA ++L+G+ R Sbjct: 181 YIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLEGK----R 236 Query: 239 PDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGN 298 P AIF NDM+ GVLRAA E I VPGELSV+GFDDIEL+++V+PPLTTV Q+ R+LG Sbjct: 237 PSAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPPLTTVGQSIRELGE 296 Query: 299 LTAQFLLERIADPSL-PARRETVAPQLQLRGSTAPR 333 A LL RIA P A + VAP++ LR ST PR Sbjct: 297 SAASLLLTRIATPRQGAAEQRIVAPRIVLRESTGPR 332 >ref|YP_001268543.1| alanine racemase [Pseudomonas putida F1] gb|ABQ79359.1| transcriptional regulator, LacI family [Pseudomonas putida F1] Length = 340 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 182/336 (54%), Positives = 234/336 (69%), Gaps = 7/336 (2%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHVLN+TRPVS R +V AA+ ELDYVPSA+ARSL+++ T Sbjct: 1 MATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIVELDYVPSAVARSLKARSTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 +IGL++PN+ NPYF+ELARGIED C GY VILCNSDD+P KQR YL+VL K DGL+ Sbjct: 61 TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120 Query: 121 IATLNQAD--LNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVA 178 +A++ Q D L + P V++DR + +D DLV D+ G LA +HLL+L VA Sbjct: 121 VASVGQDDDLLQSLAGVRTPMVIVDRELEGVDADLVRIDHEQGAYLATQHLLELGHRDVA 180 Query: 179 CIAGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQR 238 I GP ++ R+ GFR+ + + G + S +LH DF+ GG+ AA ++L+G+ R Sbjct: 181 YIGGPAETGVTQLRLSGFRRAMAEAGAPVLGSRVLHCDFTSPGGHAAAAQVLEGK----R 236 Query: 239 PDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGN 298 P AIF NDM+ GVLRAA E I VPGELSV+GFDDIEL+++V+PPLTTV Q+ R+LG Sbjct: 237 PSAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPPLTTVGQSIRELGE 296 Query: 299 LTAQFLLERIADPSL-PARRETVAPQLQLRGSTAPR 333 A LL RIA P A + VAP++ LR ST PR Sbjct: 297 SAASLLLTRIATPRQGAAEQRIVAPRIVLRESTGPR 332 >ref|ZP_07776449.1| transcriptional regulator, LacI family [Pseudomonas fluorescens WH6] gb|EFQ62346.1| transcriptional regulator, LacI family [Pseudomonas fluorescens WH6] Length = 340 Score = 345 bits (885), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 177/335 (52%), Positives = 231/335 (68%), Gaps = 7/335 (2%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHV+N+TRPVS R +V AA+K+LDYVPSA+ARSL++K T Sbjct: 1 MATIKDVAALAGISYTTVSHVVNKTRPVSEPVRIKVEAAIKQLDYVPSAVARSLKAKTTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 +IGL++PN+ NPYF+ELARGIED+C GY VILCNSDD+ +KQR YL+VL K DGLI Sbjct: 61 TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNAEKQRSYLRVLLEKRIDGLI 120 Query: 121 IATLNQADLNPAGKLD---IPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRV 177 + ++ D A L P V++DRA +D+DLV D+ G LA RHLL+L + Sbjct: 121 VTSVGGDDSGLAAGLSAVRTPMVIVDRALDGIDVDLVRIDHEEGAYLATRHLLELGHRDI 180 Query: 178 ACIAGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQ 237 ACI GP ++ R+ G+++ L + G+ +A + +DF+ GGY AA++LL P Sbjct: 181 ACIGGPAHTRVAQMRLAGYQRALREAGIDVAAHRIQASDFTSTGGYAAAVQLLAQNP--- 237 Query: 238 RPDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLG 297 P AIF NDM+ GVLRAA E I VPGELSV+GFDDI++ ++V+P LTTV Q+ +LG Sbjct: 238 -PSAIFASNDMIGFGVLRAAAERNIRVPGELSVIGFDDIQMGRYVYPALTTVGQSILQLG 296 Query: 298 NLTAQFLLERIADPSLPARRETVAPQLQLRGSTAP 332 A+ LL RIA P LP + V P + LR STAP Sbjct: 297 ETAAELLLRRIATPQLPIDQRIVTPSIVLRESTAP 331 >ref|NP_744605.1| ribose operon repressor [Pseudomonas putida KT2440] gb|AAN68069.1|AE016439_4 ribose operon repressor [Pseudomonas putida KT2440] Length = 340 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 182/336 (54%), Positives = 233/336 (69%), Gaps = 7/336 (2%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHVLN+TRPVS R +V AA+ ELDYVPSA+ARSL+++ T Sbjct: 1 MATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 +IGL++PN+ NPYF+ELARGIED C GY VILCNSDD+P KQR YL+VL K DGL+ Sbjct: 61 TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120 Query: 121 IATLNQAD--LNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVA 178 +A++ Q D L + P V++DR + +D DLV D+ G LA RHLL+L VA Sbjct: 121 VASVGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVA 180 Query: 179 CIAGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQR 238 I GP ++ R+ GFR+ + + G + S +LH DF+ GG+ AA ++L+G+ R Sbjct: 181 YIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLEGK----R 236 Query: 239 PDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGN 298 P AIF NDM+ GVLRAA E I VPGELSV+GFDDIEL+++V+P LTTV Q+ R+LG Sbjct: 237 PSAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGE 296 Query: 299 LTAQFLLERIADPSL-PARRETVAPQLQLRGSTAPR 333 A LL RIA P A + VAP++ LR ST PR Sbjct: 297 SAASLLLTRIATPRQGAAEQRIVAPRIVLRESTGPR 332 >ref|YP_347654.1| LacI family transcription regulator [Pseudomonas fluorescens Pf0-1] gb|ABA73665.1| putative ribose operon repressor [Pseudomonas fluorescens Pf0-1] Length = 339 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 177/334 (52%), Positives = 230/334 (68%), Gaps = 6/334 (1%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHV+N+TRPVS + R +V AA+K LDYVPSA+ARSL++K T Sbjct: 1 MATIKDVAALAGISYTTVSHVVNKTRPVSEEVRLKVEAAIKSLDYVPSAVARSLKAKTTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 +IGL++PN+ NPYF+ELARGIED+C GY VILCNSDD+PDKQR YL+VL K DGLI Sbjct: 61 TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLI 120 Query: 121 IATLNQADLNPAG--KLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVA 178 +A+ G + P V++DR + +D DLV D+ G LA RHLL+L +A Sbjct: 121 VASAGGDSGLAQGLAGVKTPMVIVDRGLEGVDADLVRIDHEYGAYLATRHLLELGHRDIA 180 Query: 179 CIAGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQR 238 I GP ++ R GF + L++ G+ +A S +L +DF+ GGY AA LL+ P Sbjct: 181 TIGGPASTSVAQMRQAGFARALKEAGVEVAPSRMLESDFTSTGGYNAASILLERNP---- 236 Query: 239 PDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGN 298 P AIF NDM+ IGVLRAA E + VP ELSV+GFDDI+++++V+P LTTV Q+ +LG Sbjct: 237 PSAIFAGNDMIGIGVLRAAAERNVRVPAELSVIGFDDIQMSRYVYPALTTVGQSILQLGE 296 Query: 299 LTAQFLLERIADPSLPARRETVAPQLQLRGSTAP 332 + A+ LL RIA P L + V P + LR STAP Sbjct: 297 MAAEVLLRRIATPDLATDQRIVTPSIVLRESTAP 330