BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0318.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775700.1| sugar ABC transporter periplasmic protein [H... 624 e-177 ref|YP_004754747.1| ribose ABC transport system, periplasmic rib... 482 e-134 ref|ZP_03269686.1| periplasmic binding protein/LacI transcriptio... 458 e-127 ref|ZP_02886332.1| periplasmic binding protein/LacI transcriptio... 456 e-126 ref|YP_004228013.1| periplasmic-binding protein/LacI transcripti... 450 e-124 ref|ZP_06845856.1| periplasmic binding protein/LacI transcriptio... 448 e-124 ref|YP_003907116.1| periplasmic-binding protein/LacI transcripti... 445 e-123 ref|ZP_04886492.1| putative ribose ABC transporter, periplasmic ... 445 e-123 ref|YP_001066131.1| putative ribose ABC transporter, periplasmic... 445 e-123 ref|YP_003605256.1| LacI family transcriptional regulator [Burkh... 445 e-123 >ref|YP_003775700.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63792.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 624 bits (1610), Expect = e-177, Method: Compositional matrix adjust. Identities = 314/314 (100%), Positives = 314/314 (100%) Query: 1 MNKFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANA 60 MNKFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANA Sbjct: 1 MNKFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANA 60 Query: 61 SKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVN 120 SKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVN Sbjct: 61 SKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVN 120 Query: 121 IDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQR 180 IDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQR Sbjct: 121 IDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQR 180 Query: 181 TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI 240 TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI Sbjct: 181 TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI 240 Query: 241 RAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSA 300 RAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSA Sbjct: 241 RAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSA 300 Query: 301 LGGVVETKVSLVTK 314 LGGVVETKVSLVTK Sbjct: 301 LGGVVETKVSLVTK 314 >ref|YP_004754747.1| ribose ABC transport system, periplasmic ribose-binding protein RbsB [Collimonas fungivorans Ter331] gb|AEK63924.1| Ribose ABC transport system, periplasmic ribose-binding protein RbsB [Collimonas fungivorans Ter331] Length = 367 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 254/315 (80%), Positives = 280/315 (88%), Gaps = 1/315 (0%) Query: 1 MNKFTR-RHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKAN 59 MN R + A L CA+ AMAQT AKPKVALVMKSLANEFFL MENGA+E+QKA+ Sbjct: 50 MNTRIRLKLIAATILVCALPSLPAMAQTAAKPKVALVMKSLANEFFLTMENGAKEHQKAH 109 Query: 60 ASKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVV 119 A+++DLIANGIKDE DT+NQIKIVEQMIVSKVN LVIAPADSKALVPV+KKAIDAGIIVV Sbjct: 110 AAQYDLIANGIKDETDTSNQIKIVEQMIVSKVNGLVIAPADSKALVPVIKKAIDAGIIVV 169 Query: 120 NIDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQ 179 NIDNKLDDAALKEKGITVPFVGPDNR GAKL GDYL KQ++ GDKV IIEGVSTTFNAQQ Sbjct: 170 NIDNKLDDAALKEKGITVPFVGPDNRLGAKLVGDYLAKQIKTGDKVGIIEGVSTTFNAQQ 229 Query: 180 RTLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAA 239 RTLGFQDAMK GANVV VQSGQWE+ GN++AA++LNAHPDIKA+LAGNDNMALGAVAA Sbjct: 230 RTLGFQDAMKTAGANVVAVQSGQWEMAPGNQIAAAMLNAHPDIKALLAGNDNMALGAVAA 289 Query: 240 IRAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQS 299 ++AAGKTGKV +VGYDNINAIKPMLKDGRVLAT DQFA QQAVFGIET LKA+++KK Q+ Sbjct: 290 VKAAGKTGKVLVVGYDNINAIKPMLKDGRVLATADQFASQQAVFGIETVLKAITDKKAQN 349 Query: 300 ALGGVVETKVSLVTK 314 LGG VETKV+LVTK Sbjct: 350 TLGGTVETKVALVTK 364 >ref|ZP_03269686.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. H160] gb|EDZ98745.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. H160] Length = 323 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 234/319 (73%), Positives = 268/319 (84%), Gaps = 5/319 (1%) Query: 1 MNKFTRRHFAIAAL---ACAVLP-GAAMAQT-PAKPKVALVMKSLANEFFLNMENGAREY 55 M+ TRR AA+ A AVLP AA AQ P KPKVALVMKSLANEFFL ME GA++Y Sbjct: 1 MSHRTRRRLLAAAVLVTASAVLPFSAAYAQNAPHKPKVALVMKSLANEFFLTMETGAKDY 60 Query: 56 QKANASKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAG 115 QK N KFDLI NGIKDE DTANQI+IVEQMIVSKV+A+V+APADSKALVPVVKKA+DAG Sbjct: 61 QKHNPDKFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAG 120 Query: 116 IIVVNIDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTF 175 IIVVNIDN+LD LK K + VPFVGPDNRKGA++ GDYL K + GD+V I+EGVSTT Sbjct: 121 IIVVNIDNRLDQDVLKSKDLNVPFVGPDNRKGARMVGDYLAKSQKAGDEVGILEGVSTTT 180 Query: 176 NAQQRTLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALG 235 NAQQRT GF+DAM+ VGA VV+VQSG+WEID+GN VA+++LN +P++KA+LAGNDNMA+G Sbjct: 181 NAQQRTAGFKDAMQTVGAKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLAGNDNMAIG 240 Query: 236 AVAAIRAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEK 295 AV+A+RAAGK GKV +VGYDNINAI PMLKDGRVLAT DQFA +QAVFGI+TALKALSEK Sbjct: 241 AVSAVRAAGKQGKVMVVGYDNINAIHPMLKDGRVLATADQFAAKQAVFGIDTALKALSEK 300 Query: 296 KPQSALGGVVETKVSLVTK 314 K QS L GVVET V LVTK Sbjct: 301 KKQSELSGVVETPVVLVTK 319 >ref|ZP_02886332.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia graminis C4D1M] gb|EDT07986.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia graminis C4D1M] Length = 320 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 236/318 (74%), Positives = 270/318 (84%), Gaps = 5/318 (1%) Query: 2 NKFTRRHFAIAALACA--VLP-GAAMAQT-PA-KPKVALVMKSLANEFFLNMENGAREYQ 56 N+ RR A A LA A LP AA AQT PA KPKVALVMKSLANEFFL MENGA++YQ Sbjct: 3 NRIRRRIVAAAILATASTALPFSAAYAQTAPAHKPKVALVMKSLANEFFLTMENGAKDYQ 62 Query: 57 KANASKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGI 116 K N S+FDLI NGIKDE DTANQI+IVEQMIVSKV+A+V+APADSKALVPVVKKA+DAGI Sbjct: 63 KHNPSQFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGI 122 Query: 117 IVVNIDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFN 176 IVVNIDN+LD LK K + VPFVGPDNRKGA+ GDYL K+L+ GD+V I+EGVSTT N Sbjct: 123 IVVNIDNRLDPDVLKSKDLNVPFVGPDNRKGAQKVGDYLAKKLKAGDEVGILEGVSTTTN 182 Query: 177 AQQRTLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGA 236 AQQRT GF+DAM+ VGA VV+VQSG+WEID+GN VA+++LN +P++KA+LAGNDNMA+GA Sbjct: 183 AQQRTAGFKDAMQAVGAKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLAGNDNMAIGA 242 Query: 237 VAAIRAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKK 296 V+AIRAAGK GKV +VGYDNINAIKPMLKDGRVLAT DQ+A +QAVFGI+TALKALSE K Sbjct: 243 VSAIRAAGKQGKVMVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKALSEHK 302 Query: 297 PQSALGGVVETKVSLVTK 314 QS L GVVET LVTK Sbjct: 303 KQSQLSGVVETPCDLVTK 320 >ref|YP_004228013.1| periplasmic-binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX54953.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1001] Length = 320 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/295 (76%), Positives = 260/295 (88%), Gaps = 2/295 (0%) Query: 22 AAMAQT-PA-KPKVALVMKSLANEFFLNMENGAREYQKANASKFDLIANGIKDEQDTANQ 79 AA AQT PA KPKVALVMKSLANEFFL MENGA++YQK NA+KFDLI NGIKDE DTANQ Sbjct: 26 AAYAQTAPAHKPKVALVMKSLANEFFLTMENGAKDYQKHNAAKFDLITNGIKDETDTANQ 85 Query: 80 IKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNIDNKLDDAALKEKGITVPF 139 I+IVEQMIVSKV+A+V+APADSKALVPVVKKA+DAGIIVVNIDN+LD LK K + VPF Sbjct: 86 IRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPEVLKSKDLNVPF 145 Query: 140 VGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQRTLGFQDAMKDVGANVVTVQ 199 VGPDNRKGA+ GDYL K+L+ GD+V IIEGVSTT NAQQRT GF+DAM+ VGA VV+VQ Sbjct: 146 VGPDNRKGAQKVGDYLAKKLKAGDEVGIIEGVSTTTNAQQRTAGFKDAMQAVGAKVVSVQ 205 Query: 200 SGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAIRAAGKTGKVQLVGYDNINA 259 SG+WEID+GN VA+++LN +P++KA+LAGNDNMA+GAV+A+RAAGK GKV +VGYDNINA Sbjct: 206 SGEWEIDKGNAVASAMLNEYPNLKALLAGNDNMAIGAVSAVRAAGKQGKVYVVGYDNINA 265 Query: 260 IKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSALGGVVETKVSLVTK 314 IKPMLKDGRVLAT DQ+A +QAVFGI+TALKALSE K QS L GVVET LVTK Sbjct: 266 IKPMLKDGRVLATADQYAAKQAVFGIDTALKALSEHKKQSELSGVVETPCDLVTK 320 >ref|ZP_06845856.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. Ch1-1] gb|EFG66516.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. Ch1-1] Length = 320 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 227/320 (70%), Positives = 268/320 (83%), Gaps = 6/320 (1%) Query: 1 MNKFTRRHF---AIAALACAVLP-GAAMAQTPA--KPKVALVMKSLANEFFLNMENGARE 54 M++ RR A+ A A A LP +A AQ + KPKVALVMKSLANEFFL ME GA++ Sbjct: 1 MSQRIRRRILTTAVLATASAALPFSSAYAQNASAHKPKVALVMKSLANEFFLTMETGAKD 60 Query: 55 YQKANASKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDA 114 YQK N S+FDLI NGIKDE DTANQI+IVEQMIVSKV+A+V+APADSKALVPVVKKA+DA Sbjct: 61 YQKHNPSQFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDA 120 Query: 115 GIIVVNIDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTT 174 GIIVVNIDN+LD LK K + VPFVGPDNRKGA+ GDYL ++L+ GD+V IIEGVSTT Sbjct: 121 GIIVVNIDNRLDPDVLKSKDLNVPFVGPDNRKGAQKVGDYLARKLKAGDEVGIIEGVSTT 180 Query: 175 FNAQQRTLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMAL 234 NAQQRT GF+DAM+ VGA VV+VQSG+WEID+GN VA+++LN +P++KA+LAGNDNMA+ Sbjct: 181 TNAQQRTAGFKDAMQKVGAKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLAGNDNMAI 240 Query: 235 GAVAAIRAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSE 294 GAV+A+RAAGK GKV +VGYDNINAI+PMLKDGRVLAT DQ+A +QAVFGI+TALKALSE Sbjct: 241 GAVSAVRAAGKQGKVLVVGYDNINAIRPMLKDGRVLATADQYAAKQAVFGIDTALKALSE 300 Query: 295 KKPQSALGGVVETKVSLVTK 314 K QS L GVVET L+TK Sbjct: 301 HKKQSDLSGVVETPCDLITK 320 >ref|YP_003907116.1| periplasmic-binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN57825.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1003] Length = 320 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/294 (75%), Positives = 258/294 (87%), Gaps = 2/294 (0%) Query: 23 AMAQT-PA-KPKVALVMKSLANEFFLNMENGAREYQKANASKFDLIANGIKDEQDTANQI 80 A AQT PA KPKVALVMKSLANEFFL MENGA++YQK N+S+FDLI NGIKDE DTANQI Sbjct: 27 AFAQTAPAHKPKVALVMKSLANEFFLTMENGAKDYQKHNSSQFDLITNGIKDETDTANQI 86 Query: 81 KIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNIDNKLDDAALKEKGITVPFV 140 +IVEQMIVSKV+A+V+APADSKALVPVVKKA+DAGIIVVNIDN+LD LK K + VPFV Sbjct: 87 RIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPEVLKSKDLNVPFV 146 Query: 141 GPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQRTLGFQDAMKDVGANVVTVQS 200 GPDNRKGA+ GDYL K+L+ GD+V IIEGVSTT NAQQRT GF+DAM+ GA VV+VQS Sbjct: 147 GPDNRKGAQKVGDYLAKKLKAGDEVGIIEGVSTTTNAQQRTAGFKDAMQAAGAKVVSVQS 206 Query: 201 GQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAIRAAGKTGKVQLVGYDNINAI 260 G+WEID+GN VA+++LN +P++KA+LAGNDNMA+GAV+A+RAAGK GKV +VGYDNINAI Sbjct: 207 GEWEIDKGNAVASAMLNEYPNLKALLAGNDNMAIGAVSAVRAAGKQGKVYVVGYDNINAI 266 Query: 261 KPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSALGGVVETKVSLVTK 314 KPMLKDGRV+AT DQ+A +QAVFGI+TALKALSE K QS L GVVET LVTK Sbjct: 267 KPMLKDGRVIATADQYAAKQAVFGIDTALKALSEHKKQSQLSGVVETPCDLVTK 320 >ref|ZP_04886492.1| putative ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia pseudomallei 1655] gb|EDU07476.1| putative ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia pseudomallei 1655] Length = 354 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/292 (74%), Positives = 255/292 (87%) Query: 23 AMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANASKFDLIANGIKDEQDTANQIKI 82 A A+T KPKVALVMKSLANEFFL MENGA+EYQK NAS+FDL+ NGIKDE DTA+QI+I Sbjct: 62 ARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRI 121 Query: 83 VEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNIDNKLDDAALKEKGITVPFVGP 142 VEQMIVSKV+A+V+APADSKALVPVVKKA+DAGIIVVNIDN+LD LK KG+ VPFVGP Sbjct: 122 VEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGP 181 Query: 143 DNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQRTLGFQDAMKDVGANVVTVQSGQ 202 DNRKGA++ GDYL K+L+ GD V I+EGV TT NAQQRT GFQDAMK GA VV+VQSG+ Sbjct: 182 DNRKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAGAKVVSVQSGE 241 Query: 203 WEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAIRAAGKTGKVQLVGYDNINAIKP 262 WEID+GN VAA++LN +P++KA+L GNDNMA+GAV+A+RAAG+ GKV +VGYDNINAIKP Sbjct: 242 WEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINAIKP 301 Query: 263 MLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSALGGVVETKVSLVTK 314 MLKDGRVLAT DQ+A +QAVFGI+TALKAL+E + Q+ + GVV T V LVTK Sbjct: 302 MLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTK 353 >ref|YP_001066131.1| putative ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia pseudomallei 1106a] ref|ZP_04816256.1| putative ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia pseudomallei 1106b] ref|ZP_04951101.1| putative ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia pseudomallei 1710a] gb|ABN91025.1| putative ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia pseudomallei 1106a] gb|EES26881.1| putative ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia pseudomallei 1106b] gb|EET08120.1| putative ribose ABC transporter, periplasmic ribose-binding protein [Burkholderia pseudomallei 1710a] Length = 376 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/292 (74%), Positives = 255/292 (87%) Query: 23 AMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANASKFDLIANGIKDEQDTANQIKI 82 A A+T KPKVALVMKSLANEFFL MENGA+EYQK NAS+FDL+ NGIKDE DTA+QI+I Sbjct: 84 ARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRI 143 Query: 83 VEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNIDNKLDDAALKEKGITVPFVGP 142 VEQMIVSKV+A+V+APADSKALVPVVKKA+DAGIIVVNIDN+LD LK KG+ VPFVGP Sbjct: 144 VEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGP 203 Query: 143 DNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQRTLGFQDAMKDVGANVVTVQSGQ 202 DNRKGA++ GDYL K+L+ GD V I+EGV TT NAQQRT GFQDAMK GA VV+VQSG+ Sbjct: 204 DNRKGARMVGDYLAKRLKAGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAGAKVVSVQSGE 263 Query: 203 WEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAIRAAGKTGKVQLVGYDNINAIKP 262 WEID+GN VAA++LN +P++KA+L GNDNMA+GAV+A+RAAG+ GKV +VGYDNINAIKP Sbjct: 264 WEIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGRQGKVYVVGYDNINAIKP 323 Query: 263 MLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSALGGVVETKVSLVTK 314 MLKDGRVLAT DQ+A +QAVFGI+TALKAL+E + Q+ + GVV T V LVTK Sbjct: 324 MLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTK 375 >ref|YP_003605256.1| LacI family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG15745.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1002] Length = 324 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/320 (71%), Positives = 267/320 (83%), Gaps = 6/320 (1%) Query: 1 MNKFTRRHFAIAALACAV---LP-GAAMAQT-PA-KPKVALVMKSLANEFFLNMENGARE 54 M+ TRR AA+ LP A AQ PA KPKVALVMKSLANEFFL ME GA++ Sbjct: 1 MSHRTRRRIVAAAVLATASAVLPFSVAHAQNAPAHKPKVALVMKSLANEFFLTMETGAKD 60 Query: 55 YQKANASKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDA 114 YQK N +KFDLI NGIKDE DTANQI+IVEQMIVSKV+A+V+APADSKALVPVVKKA+DA Sbjct: 61 YQKQNPAKFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDA 120 Query: 115 GIIVVNIDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTT 174 GIIVVNIDN+LD LK K + VPFVGPDNRKGA+L GDYL K+L+ GD+V I+EGVSTT Sbjct: 121 GIIVVNIDNRLDQDVLKSKDLNVPFVGPDNRKGARLVGDYLAKRLKSGDEVGILEGVSTT 180 Query: 175 FNAQQRTLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMAL 234 NAQQRT GF+DAM+ VGA +V+VQSG+WEID+GN VA+++LN +P++KA+LAGNDNMA+ Sbjct: 181 TNAQQRTAGFKDAMQTVGAKIVSVQSGEWEIDKGNAVASAMLNEYPNLKALLAGNDNMAI 240 Query: 235 GAVAAIRAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSE 294 GAV+A+RAAGK GKV +VGYDNINAI PMLKDGRVLAT DQFA +QAVFGI+TALKALSE Sbjct: 241 GAVSAVRAAGKQGKVLVVGYDNINAIHPMLKDGRVLATADQFAAKQAVFGIDTALKALSE 300 Query: 295 KKPQSALGGVVETKVSLVTK 314 + QS L GVVET V LVTK Sbjct: 301 NRKQSELSGVVETPVVLVTK 320