BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0308.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775692.1| transcription regulator protein [Herbaspiril... 587 e-166 ref|ZP_07676168.1| transcriptional regulator, IclR family [Ralst... 237 2e-60 ref|YP_001900355.1| IclR family transcriptional regulator [Ralst... 236 3e-60 ref|YP_002982337.1| IclR family transcriptional regulator [Ralst... 233 2e-59 gb|EGP43315.1| transcriptional regulator family protein 15 [Achr... 223 2e-56 ref|ZP_06687503.1| IclR family transcriptional regulator [Achrom... 221 7e-56 gb|EFV86387.1| IclR family Transcriptional regulator [Achromobac... 221 7e-56 ref|YP_001888155.1| IclR family transcriptional regulator [Burkh... 218 1e-54 ref|YP_001631108.1| IclR family transcriptional regulator [Borde... 214 1e-53 ref|YP_553286.1| IclR family transcriptional regulator [Burkhold... 213 2e-53 >ref|YP_003775692.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63784.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 587 bits (1513), Expect = e-166, Method: Compositional matrix adjust. Identities = 285/285 (100%), Positives = 285/285 (100%) Query: 1 MRKFSQLLGKCEISFQIFSNIFLICGNDSPKMRNSPYIAAMDSPQTSTIVDRVLHVLAGV 60 MRKFSQLLGKCEISFQIFSNIFLICGNDSPKMRNSPYIAAMDSPQTSTIVDRVLHVLAGV Sbjct: 8 MRKFSQLLGKCEISFQIFSNIFLICGNDSPKMRNSPYIAAMDSPQTSTIVDRVLHVLAGV 67 Query: 61 ARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFDQ 120 ARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFDQ Sbjct: 68 ARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPTGVQLAWGFDQ 127 Query: 121 NSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFTKGRAHPLLKG 180 NSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFTKGRAHPLLKG Sbjct: 128 NSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFTKGRAHPLLKG 187 Query: 181 ASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISESEVDLGVWGVS 240 ASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISESEVDLGVWGVS Sbjct: 188 ASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISESEVDLGVWGVS 247 Query: 241 VPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 285 VPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF Sbjct: 248 VPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 292 >ref|ZP_07676168.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA] gb|EFP65506.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA] Length = 256 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 122/235 (51%), Positives = 158/235 (67%), Gaps = 2/235 (0%) Query: 51 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 110 DRVL VLA +AR G+PV+A+++ + P ST+YR +A LK+WG + E ++GT+ PGP Sbjct: 21 DRVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLE--SAGTYAPGPI 78 Query: 111 GVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFT 170 +QLA GFD S+LV ++R ++ LV SGESVGL+VA+ Q VC+ M ES Q LRCSF Sbjct: 79 SLQLALGFDHASHLVQEARIGMAKLVAESGESVGLVVAVKDQAVCLEMVESQQSLRCSFE 138 Query: 171 KGRAHPLLKGASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISES 230 KGR PLL GASAKSLLAFMP + +L D L + A L+ +L +IR GY +SE Sbjct: 139 KGRGVPLLAGASAKSLLAFMPPAAARAILADLLAIDADTQAQLQAELSDIRAAGYALSEG 198 Query: 231 EVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 285 EVD GVWGVSVP+ G G+ITLMAPA RV +EQ L+ MT+ +A I R Sbjct: 199 EVDPGVWGVSVPVFRLPGHALGSITLMAPATRVRGKEQRLIDMTVAAAASISARL 253 >ref|YP_001900355.1| IclR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD27923.1| transcriptional regulator, IclR family [Ralstonia pickettii 12J] Length = 256 Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 122/235 (51%), Positives = 158/235 (67%), Gaps = 2/235 (0%) Query: 51 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 110 DRVL VLA +AR G+PV+A+++ + P ST+YR +A LK+WG + E ++GT+ PGP Sbjct: 21 DRVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLE--SAGTYAPGPI 78 Query: 111 GVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFT 170 +QLA GFD S+LV ++R ++ LV SGESVGL+VA+ Q VC+ M ES Q LRCSF Sbjct: 79 SLQLALGFDHASHLVQEARIGMAKLVVESGESVGLVVAVKDQAVCLEMVESQQSLRCSFE 138 Query: 171 KGRAHPLLKGASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISES 230 KGR PLL GASAKSLLAFMP + +L D L + A L+ +L +IR GY +SE Sbjct: 139 KGRGVPLLAGASAKSLLAFMPPAAARAILADLLAVDADTQAQLQAELNDIRAAGYALSEG 198 Query: 231 EVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 285 EVD GVWGVSVP+ G G+ITLMAPA RV +EQ L+ MT+ +A I R Sbjct: 199 EVDPGVWGVSVPVFRLPGHALGSITLMAPATRVRGKEQRLIDMTVAAAASISARL 253 >ref|YP_002982337.1| IclR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS63665.1| transcriptional regulator, IclR family [Ralstonia pickettii 12D] Length = 256 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/235 (51%), Positives = 157/235 (66%), Gaps = 2/235 (0%) Query: 51 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 110 DRVL VLA +AR G+PV+A+++ + P ST+YR +A LK+WG + E ++GT+ PGP Sbjct: 21 DRVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLE--SAGTYAPGPI 78 Query: 111 GVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFT 170 +QLA GFD S+LV ++R ++ L SGESVGL+VA+ Q VC+ M ES Q LRCSF Sbjct: 79 SLQLALGFDHASHLVQEARIGMAKLEVESGESVGLVVAVKDQAVCLEMVESQQSLRCSFE 138 Query: 171 KGRAHPLLKGASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISES 230 KGR PLL GASAKSLLAFMP + +L D L + A L+ +L +IR GY +SE Sbjct: 139 KGRGVPLLAGASAKSLLAFMPPAAARAILADLLAIDADTQAQLQAELSDIRAAGYALSEG 198 Query: 231 EVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 285 EVD GVWGVSVP+ G G+ITLMAPA RV +EQ L+ MT+ +A I R Sbjct: 199 EVDPGVWGVSVPVFRLPGHALGSITLMAPATRVRGKEQRLIDMTVAAAASISARL 253 >gb|EGP43315.1| transcriptional regulator family protein 15 [Achromobacter xylosoxidans AXX-A] Length = 245 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/235 (48%), Positives = 153/235 (65%), Gaps = 2/235 (0%) Query: 51 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 110 DRVL+VLA +AR P+S +A ST+YR +A LK+WG + EH G + PGP Sbjct: 10 DRVLYVLATLARHDGPLSIAALAEKTGLAQSTLYRQVALLKRWGFVAEH--EGEYGPGPL 67 Query: 111 GVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFT 170 VQLAWGFDQ+S L+ +++ ++++L SGE++GLLVA+ Q VC+ M ES PLRCSFT Sbjct: 68 CVQLAWGFDQSSFLIHEAQPDMAALAAASGETIGLLVAVKDQAVCLDMVESQHPLRCSFT 127 Query: 171 KGRAHPLLKGASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISES 230 KGR PL +GASAKSLLAFMP QQ L + + A L +LE IR +GY +++S Sbjct: 128 KGRGLPLARGASAKSLLAFMPVPRQQAALAILARESGVDPARLADELEAIRAQGYAVTDS 187 Query: 231 EVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 285 EVD GVWGVSVPI + +ITLMAP+ R R Q + +T+ +A+RI R Sbjct: 188 EVDAGVWGVSVPIFQRANQAVASITLMAPSTRAAQRPQAFIDLTVAAARRISGRL 242 >ref|ZP_06687503.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75603.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 246 Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 118/248 (47%), Positives = 158/248 (63%), Gaps = 8/248 (3%) Query: 41 MDSPQTSTIVDRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHM 100 M P DRVL+VLA +AR P++ +A ST+YR +A LK+WG + EH Sbjct: 1 MSEPSVGAGADRVLYVLATLARHDGPLTIAALAEKTGLAQSTLYRQVALLKRWGFVAEH- 59 Query: 101 NSGTFEPGPTGVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEE 160 G + PGP VQLAWGFDQ+S L+ +++ ++++L SGE++GLLVA+ Q VC+ M E Sbjct: 60 -EGEYGPGPLCVQLAWGFDQSSFLIHEAQPDMAALAAASGETIGLLVAVKDQAVCLDMVE 118 Query: 161 SDQPLRCSFTKGRAHPLLKGASAKSLLAFMP-RKLQQKL--LTDQLGDKPEELAALETQL 217 S PLRCSFTKGR PL +GASAKSLLAFMP +LQ L L D+ G + L +L Sbjct: 119 SQHPLRCSFTKGRGLPLARGASAKSLLAFMPLGRLQAALAYLADEAG---VDAGRLTDEL 175 Query: 218 EEIRRRGYCISESEVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLES 277 E IR +GY +++SEVD GVWGVSVPI + +ITLMAP+ R + L+ MT+ + Sbjct: 176 ERIREQGYAVTDSEVDAGVWGVSVPIFQRPNQAVASITLMAPSTRAAQQPDALIAMTVAA 235 Query: 278 AQRICNRF 285 A+RI R Sbjct: 236 ARRISERL 243 >gb|EFV86387.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 245 Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 117/238 (49%), Positives = 156/238 (65%), Gaps = 8/238 (3%) Query: 51 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 110 DRVL+VLA +AR P+S +A ST+YR +A LK+WG + EH G + PGP Sbjct: 10 DRVLYVLATLARHDGPLSIAALAEKTGLAQSTLYRQVALLKRWGFVAEH--EGEYGPGPL 67 Query: 111 GVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFT 170 VQLAWGFDQ+S L+ +++ ++++L SGE++GLLVA+ Q VC+ M ES PLRCSFT Sbjct: 68 CVQLAWGFDQSSFLIHEAQPDMAALAAASGETIGLLVAVKDQAVCLDMVESQHPLRCSFT 127 Query: 171 KGRAHPLLKGASAKSLLAFMP-RKLQQKL--LTDQLGDKPEELAALETQLEEIRRRGYCI 227 KGR PL +GASAKSLLAFMP +LQ L L + G P LA +LE IR +GY + Sbjct: 128 KGRGLPLARGASAKSLLAFMPAARLQAALAVLARESGLDPARLA---DELEAIRAQGYAV 184 Query: 228 SESEVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 285 ++SEVD GVWGVSVPI + +ITLMAP+ R R Q + +T+ +A+RI + Sbjct: 185 TDSEVDAGVWGVSVPIFQRANQAVASITLMAPSTRAAQRPQAFIDLTVAAARRISGKL 242 >ref|YP_001888155.1| IclR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD18785.1| transcriptional regulator, IclR family [Burkholderia phytofirmans PsJN] Length = 249 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 118/248 (47%), Positives = 159/248 (64%), Gaps = 5/248 (2%) Query: 41 MDSPQTSTIVDRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHM 100 M++ Q T +RVL VLA +A GK +S K++ A+ ST+YR +A LK+WG + E Sbjct: 1 MNTEQGVTGAERVLLVLAALASHGKAMSVKELLAVTGLAQSTLYRQIALLKRWGFVAE-- 58 Query: 101 NSGTFEPGPTGVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEE 160 N+G + PGP +QLA GFD NS LV SR E+ L + S ES+GL+VA+ Q++C+ M + Sbjct: 59 NAGHYAPGPISLQLALGFDVNSLLVEASRSEMQRLARASQESIGLVVAVKHQVMCLEMVD 118 Query: 161 SDQPLRCSFTKGRAHPLLKGASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEI 220 S LRCSF KGRA L GASAKSLLAFM K + ++L + D P A+E +LE+I Sbjct: 119 SQHSLRCSFEKGRAVALKAGASAKSLLAFMADKARTEVLDNLFNDDPAGRVAIEARLEQI 178 Query: 221 RRRGYCISESEVDLGVWGVSVPIMTSNGRLEG---TITLMAPALRVGNREQELVRMTLES 277 R +GY +S+SEVD GVWGVS PI +GR G +ITLMAP+ R RE + + TL + Sbjct: 179 RAQGYAVSDSEVDPGVWGVSAPIFHRSGRGAGSGASITLMAPSTRAVGRESQFIDGTLRT 238 Query: 278 AQRICNRF 285 A+ I R Sbjct: 239 ARAISERM 246 >ref|YP_001631108.1| IclR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP42840.1| transcriptional regulator, IclR family [Bordetella petrii] Length = 245 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 114/235 (48%), Positives = 151/235 (64%), Gaps = 3/235 (1%) Query: 51 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 110 DRVL+VLA +AR P+S + +A ST+YR +A LK+WG + E G + PGP Sbjct: 11 DRVLYVLASLARHDGPLSIQALADKTGLAQSTLYRQVALLKRWGFVAE--QGGEYGPGPL 68 Query: 111 GVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEESDQPLRCSFT 170 VQLAWGFDQ+S LV +S+ +++ L SGE+VGLL+A+ Q VC+ M ES PLRCSF Sbjct: 69 CVQLAWGFDQSSFLVRESQPDMARLAADSGETVGLLLAVKDQAVCLDMIESTHPLRCSFV 128 Query: 171 KGRAHPLLKGASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEIRRRGYCISES 230 KGR PL++GASA+SL+AFMP Q LL D L ++A L LE IR GY +++S Sbjct: 129 KGRGLPLVRGASARSLMAFMPAARLQALL-DDLRASGVDVAELAASLEPIRAAGYAVTDS 187 Query: 231 EVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQRICNRF 285 E+D GVWGVSVP+ +ITLMAP+ R R L+ MT+ +A+RI R Sbjct: 188 ELDAGVWGVSVPVFQRPHLAVASITLMAPSTRAALRAPALIDMTIAAARRISARL 242 >ref|YP_553286.1| IclR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE33936.1| transcriptional regulator, IclR family [Burkholderia xenovorans LB400] Length = 249 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/248 (47%), Positives = 157/248 (63%), Gaps = 5/248 (2%) Query: 41 MDSPQTSTIVDRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHM 100 M+ Q T +RVL VLA +A GK +S K + A+ ST+YR +A LK+WG + E Sbjct: 1 MNVEQGVTGAERVLLVLAALASHGKAMSVKDLLAVTGLAQSTLYRQIALLKRWGFVAE-- 58 Query: 101 NSGTFEPGPTGVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEE 160 N+G + PGP +QLA GFD NS LV SR E+ L + S ES+GL+VA+ Q++C+ M E Sbjct: 59 NAGYYAPGPISLQLALGFDVNSLLVEASRSEMQQLARASQESIGLVVAVRHQVMCLEMVE 118 Query: 161 SDQPLRCSFTKGRAHPLLKGASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEI 220 S LRCSF KGRA PL GASAKSLLAFM + + ++L + P AA+E +L++I Sbjct: 119 SQHSLRCSFEKGRAVPLKAGASAKSLLAFMADRARVEVLDGLFDNDPAGRAAIEAELQQI 178 Query: 221 RRRGYCISESEVDLGVWGVSVPIMTSNGRLEG---TITLMAPALRVGNREQELVRMTLES 277 R +GY +S+SEVD GVWGVS PI +GR G +ITLMAP+ R RE + + TL + Sbjct: 179 RTQGYAVSDSEVDPGVWGVSAPIFHHSGRGAGSSASITLMAPSTRAIGRESQFIDGTLRT 238 Query: 278 AQRICNRF 285 A+ I Sbjct: 239 ARAISEHM 246