BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0304.p         (68 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001099592.1| hypothetical protein HEAR1292 [Herminiimonas...   103   1e-20
ref|YP_004752046.1| hypothetical protein CFU_1391 [Collimonas fu...    66   2e-09

>ref|YP_001099592.1| hypothetical protein HEAR1292 [Herminiimonas arsenicoxydans]
 emb|CAL61465.1| hypothetical protein HEAR1292 [Herminiimonas arsenicoxydans]
          Length = 67

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 58/68 (85%), Gaps = 1/68 (1%)

Query: 1  MDLVEKFDAKGKTGAPYHVEVYQTQQDEADEAVQAFSRTYKLTDGRALDPLTNEKFRIVQ 60
          MDLVEKFDAKGKTGA YHVEVYQT  + +DE     S+TY+LTDGRALDPL++ KF+IVQ
Sbjct: 1  MDLVEKFDAKGKTGAAYHVEVYQTPIETSDEGSPG-SKTYQLTDGRALDPLSDAKFKIVQ 59

Query: 61 TGEKIYRV 68
          TGEKIYRV
Sbjct: 60 TGEKIYRV 67


>ref|YP_004752046.1| hypothetical protein CFU_1391 [Collimonas fungivorans Ter331]
 gb|AEK61223.1| hypothetical protein CFU_1391 [Collimonas fungivorans Ter331]
          Length = 87

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 45/73 (61%), Gaps = 5/73 (6%)

Query: 1  MDLVEKFDAKGK-TGAPYHVEVYQ--TQQDEADEAVQAFS--RTYKLTDGRALDPLTNEK 55
          MDL EKFDAKGK TG  YHVE Y+   ++  A+  V +      YKL DGRAL P    K
Sbjct: 15 MDLTEKFDAKGKETGNAYHVECYKDSIERAAANGTVASLPGREIYKLADGRALTPYAEGK 74

Query: 56 FRIVQTGEKIYRV 68
          F I QTGEKI RV
Sbjct: 75 FVIDQTGEKIVRV 87