BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0300.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775685.1| ATP-dependent DNA ligase [Herbaspirillum ser... 1103 0.0 ref|ZP_08273086.1| putative DNA ligase [Oxalobacteraceae bacteri... 740 0.0 ref|YP_001020715.1| ATP-dependent DNA ligase [Methylibium petrol... 721 0.0 ref|YP_004359588.1| ATP dependent DNA ligase [Burkholderia gladi... 671 0.0 ref|ZP_06838862.1| ATP dependent DNA ligase [Burkholderia sp. Ch... 664 0.0 ref|YP_001889021.1| ATP-dependent DNA ligase [Burkholderia phyto... 664 0.0 ref|YP_003908938.1| ATP dependent DNA ligase [Burkholderia sp. C... 663 0.0 ref|YP_553997.1| ATP-dependent DNA ligase [Burkholderia xenovora... 661 0.0 ref|YP_003607429.1| ATP dependent DNA ligase [Burkholderia sp. C... 661 0.0 ref|ZP_02881687.1| ATP dependent DNA ligase [Burkholderia gramin... 660 0.0 >ref|YP_003775685.1| ATP-dependent DNA ligase [Herbaspirillum seropedicae SmR1] gb|ADJ63777.1| ATP-dependent DNA ligase protein [Herbaspirillum seropedicae SmR1] Length = 555 Score = 1103 bits (2853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/555 (99%), Positives = 552/555 (99%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC Sbjct: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARW+EERIAPLRGAAPETI Sbjct: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWVEERIAPLRGAAPETI 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD Sbjct: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 Query: 181 GRARPDAERFARLIAPADSADQPLQGGQPYPFFLAHPLLDAPATLGPIQQWQVEWKYDGI 240 GRARPDAERFARLIAPADSADQPLQGGQPYPFFLAHPL+DAPATLGPIQQWQVEWKYDGI Sbjct: 181 GRARPDAERFARLIAPADSADQPLQGGQPYPFFLAHPLMDAPATLGPIQQWQVEWKYDGI 240 Query: 241 RAQLVRRHGQNWLWSRGEELITERFPELAALPLPDGTVIDGEIVIRHPDAGLAAERVAPF 300 RAQLVRRHGQNWLWSRGEELITERFPELAALPLPDGTVIDGEIVIRHPDAGLAAERVAPF Sbjct: 241 RAQLVRRHGQNWLWSRGEELITERFPELAALPLPDGTVIDGEIVIRHPDAGLAAERVAPF 300 Query: 301 SELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRRRLEALVGSHPAAA 360 SELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQ ERRRRLEALVGSHPAAA Sbjct: 301 SELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQSERRRRLEALVGSHPAAA 360 Query: 361 LMLAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRNDGTWWKWKIDPYSI 420 LMLAPTL AKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRNDGTWWKWKIDPYSI Sbjct: 361 LMLAPTLTAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRNDGTWWKWKIDPYSI 420 Query: 421 DAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYSGLTDAEIAVVDQVI 480 DAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYSGLTDAEIAVVDQVI Sbjct: 421 DAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYSGLTDAEIAVVDQVI 480 Query: 481 RKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILRQRLDKTVEQADTLA 540 RKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILRQRLDKTVEQADTLA Sbjct: 481 RKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILRQRLDKTVEQADTLA 540 Query: 541 TLRALLPPSPHPEQR 555 TLRALLPPSP PEQR Sbjct: 541 TLRALLPPSPQPEQR 555 >ref|ZP_08273086.1| putative DNA ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33431.1| putative DNA ligase [Oxalobacteraceae bacterium IMCC9480] Length = 539 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/546 (69%), Positives = 434/546 (79%), Gaps = 8/546 (1%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 MREF+RLY LDATTST RKLA L YF A P +AAWAVYFLAGGKPRQAVPT LL+ Sbjct: 1 MREFARLYDALDATTSTNRKLAELVAYFRVAAPENAAWAVYFLAGGKPRQAVPTKLLRHY 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A E A +D+WLF+ECY +VGDLAETIAHILP + LGLA+WM+ERI PLRGAAPE I Sbjct: 61 ATEAAGLDDWLFDECYHAVGDLAETIAHILPAPQRRSDLGLAQWMDERITPLRGAAPEAI 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R+A+ WDEL + RFLL KLIGGGFRVGVS+LLVTRALA VA LD+KL+AQR++GWTD Sbjct: 121 RSAMLAYWDELAPRERFLLVKLIGGGFRVGVSKLLVTRALAGVAALDSKLIAQRLMGWTD 180 Query: 181 GRARPDAERFARLIAPADSADQPLQGGQPYPFFLAHPLLDAPATLGPIQQWQVEWKYDGI 240 R RP AERF L+AP +Q L+GGQP+PFFLAHPL P TLGPI WQVEWKYDGI Sbjct: 181 ARQRPSAERFLALVAPTSDQEQALRGGQPFPFFLAHPLQAEPVTLGPITGWQVEWKYDGI 240 Query: 241 RAQLVRRHGQNWLWSRGEELITERFPELAALPLPDGTVIDGEIVIRHPDAGLAAERVAPF 300 RAQLVRR GQ+W+WSRGEELI+E FPE+AA+ LPDGTVIDGEI+I D A F Sbjct: 241 RAQLVRRDGQSWVWSRGEELISEGFPEIAAIALPDGTVIDGEILIWGSDTH------ASF 294 Query: 301 SELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRRRLEALVGSHPAAA 360 SELQKRIGRK LS +LLAELPA LIAYD+LE DG DLR PQ RR LE +V + + Sbjct: 295 SELQKRIGRKTLSPKLLAELPAVLIAYDVLEHDGIDLREQPQSARRTVLEKVVAAVDSDQ 354 Query: 361 LMLAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRNDGTWWKWKIDPYSI 420 L L+P + A W+ALA +R +R R VEGMMLK ++A+YG+GRTR+ G WWKWK+DPYS+ Sbjct: 355 LKLSPLIVAAGWEALAAIRMQSRARAVEGMMLKAVNAQYGVGRTRDVGVWWKWKVDPYSV 414 Query: 421 DAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYSGLTDAEIAVVDQVI 480 DAVLIYAQ+GHGRRASLYTDYTFA+WD E GS R LVPFAKAYSGLTDAEIA+VD I Sbjct: 415 DAVLIYAQSGHGRRASLYTDYTFAVWD-VAEDGS-RTLVPFAKAYSGLTDAEIALVDARI 472 Query: 481 RKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILRQRLDKTVEQADTLA 540 RK+TIEKFGPVRSV P+MVFEIGFEGIA S RHK+G+AVRFPR+LR R DK VE+ADTL Sbjct: 473 RKTTIEKFGPVRSVTPTMVFEIGFEGIARSPRHKSGIAVRFPRLLRIRDDKPVEEADTLQ 532 Query: 541 TLRALL 546 TL LL Sbjct: 533 TLIGLL 538 >ref|YP_001020715.1| ATP-dependent DNA ligase [Methylibium petroleiphilum PM1] gb|ABM94480.1| DNA ligase, ATP-dependent, putative [Methylibium petroleiphilum PM1] Length = 542 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/547 (69%), Positives = 433/547 (79%), Gaps = 7/547 (1%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 MR+F+RLY LDATTST KL AL YF A AAWA YFLAGGKPRQAVPT+LL+Q Sbjct: 1 MRDFARLYAALDATTSTHEKLEALTAYFRAAPARHAAWAAYFLAGGKPRQAVPTALLRQL 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A E A + WLF+ CY++VGDLAETIA +LPP + LGL WM ERI PLRGA PE + Sbjct: 61 AAERAGLPPWLFDACYEAVGDLAETIALVLPPPVRDSALGLDDWMRERIGPLRGAPPEQV 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R ALF AWDELD GRFLL KLIGGGFRVGVSRLL+TRALAAVA LDAKL+AQR++GWTD Sbjct: 121 RTALFDAWDELDTPGRFLLGKLIGGGFRVGVSRLLLTRALAAVAGLDAKLIAQRLMGWTD 180 Query: 181 GRARPDAERFARLIAPADSADQPLQGGQPYPFFLAHPLLDAPATLGPIQQWQVEWKYDGI 240 A+P A+ +A L+AP + GGQPYPFFLAHPL P TLG + WQ EWKYDGI Sbjct: 181 KGAQPTADAYAALLAPEAATGDASPGGQPYPFFLAHPLQAEPQTLGALADWQAEWKYDGI 240 Query: 241 RAQLVRRHGQNWLWSRGEELITERFPELAALPLPDGTVIDGEIVIRHPDAGLAAERVAPF 300 RAQLVRR GQ+WLWSRGEELIT+RFPELA L LPDG VIDGEIV+ R APF Sbjct: 241 RAQLVRRGGQSWLWSRGEELITDRFPELAKLSLPDGAVIDGEIVVWQD------SRPAPF 294 Query: 301 SELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRRRLEALVGSHPAAA 360 + LQ+RIGRK L ARLL ELPA LIAYDLLEQ+G D R PQ RR RLE L+ + A Sbjct: 295 AALQRRIGRKTLGARLLQELPAVLIAYDLLEQEGVDRRDEPQHLRRMRLEQLISATADPA 354 Query: 361 LMLAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRNDGTWWKWKIDPYSI 420 L L+P + A DW ALA LR +ARERGVEG+MLK +ARYG+GRT++ G WWKWK+DPY++ Sbjct: 355 LQLSPQVQAPDWAALAVLRDTARERGVEGLMLKAREARYGVGRTKDVGVWWKWKVDPYAV 414 Query: 421 DAVLIYAQAGHGRRASLYTDYTFALWDGPPE-AGSQRKLVPFAKAYSGLTDAEIAVVDQV 479 DAVL+YAQAGHGRRASLYTDYTFA+WD PP+ A +R+LVPFAKAYSGL+DAEIA VD V Sbjct: 415 DAVLVYAQAGHGRRASLYTDYTFAVWDAPPDGAPGERRLVPFAKAYSGLSDAEIARVDAV 474 Query: 480 IRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILRQRLDKTVEQADTL 539 IRK+TIEKFGPVRSV+P++VFEIGFEGIALS+RH+AG+AVRFPRILR R DK VE+ADTL Sbjct: 475 IRKTTIEKFGPVRSVRPTLVFEIGFEGIALSTRHRAGVAVRFPRILRTRPDKPVEEADTL 534 Query: 540 ATLRALL 546 ATL+ LL Sbjct: 535 ATLKGLL 541 >ref|YP_004359588.1| ATP dependent DNA ligase [Burkholderia gladioli BSR3] gb|AEA59632.1| ATP dependent DNA ligase [Burkholderia gladioli BSR3] Length = 558 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/564 (62%), Positives = 415/564 (73%), Gaps = 21/564 (3%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 M+ F+ LY LDATTST KL AL YF A+P DAAWA YFLAGGKPRQ+VPT LL QC Sbjct: 1 MKRFAALYAALDATTSTQVKLEALIAYFSAAEPEDAAWASYFLAGGKPRQSVPTRLLAQC 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A + A + +WLFEE YQ+VGDLAETIAH+LPPA+ ++ LGLA+W+E R LRG+ PE + Sbjct: 61 ARDRAGLPDWLFEESYQAVGDLAETIAHVLPPATRASSLGLAQWIETRALTLRGSEPEAL 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R L WDELDW RFLL+KLIGGGFRVGVSR LV RALAAVA +D K +AQRMVGWTD Sbjct: 121 RERLVGYWDELDWSERFLLTKLIGGGFRVGVSRQLVVRALAAVAGVDHKRIAQRMVGWTD 180 Query: 181 GRARPDAERFARLIAPADSAD--------QPLQGGQPYPFFLAHPLLDAPATLGPIQQWQ 232 R PDA R+ RLIA D G PYPFFLAHPL PATLGPI W Sbjct: 181 SRQAPDAGRYLRLIAAEPQGDAGAVAAATHESDLGLPYPFFLAHPLQADPATLGPIGDWL 240 Query: 233 VEWKYDGIRAQLVRRHGQNWLWSRGEELITERFPELAAL--PLPDGTVIDGEIVIRHPDA 290 VEWK+DGIRAQLV+R G+ W+WSRGE+L+TERFPELAAL LPDGTV+DGEI+ P Sbjct: 241 VEWKWDGIRAQLVKRAGRVWIWSRGEDLLTERFPELAALGEALPDGTVVDGEILAWEP-- 298 Query: 291 GLAAERVAPFSELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRRRLE 350 A+ PF+ LQ RI RK+LS R+LA+ PA L AYDLLE+ G DLR P RR RLE Sbjct: 299 --GADTPLPFARLQPRITRKSLSKRVLADSPAALRAYDLLEEGGRDLRTEPLARRRARLE 356 Query: 351 ALVGSHPAA----ALMLAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRN 406 AL + PA AL ++P + A DW ALA LR +R RGVEG+MLK + YG+GRT+ Sbjct: 357 ALAEALPAGESGVALRVSPLVEAVDWPALAALREQSRARGVEGLMLKQRASMYGVGRTKA 416 Query: 407 DGTWWKWKIDPYSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYS 466 GTWWKWKIDPY+IDAVL+YAQ GHGRRASLYTD+TFA+WD E R LVPFAKAYS Sbjct: 417 AGTWWKWKIDPYAIDAVLLYAQRGHGRRASLYTDFTFAVWD---EVDGVRTLVPFAKAYS 473 Query: 467 GLTDAEIAVVDQVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILR 526 GLTD E+ VD ++R++TIEKFGPVRSV PS+VFEIGFEGI S RHK+G+AVRFPR+LR Sbjct: 474 GLTDEEMRQVDAIVRRTTIEKFGPVRSVTPSLVFEIGFEGIQASPRHKSGIAVRFPRMLR 533 Query: 527 QRLDKTVEQADTLATLRALLPPSP 550 R DK++E ADTLA L+ L +P Sbjct: 534 WRTDKSIEDADTLAMLKGFLDEAP 557 >ref|ZP_06838862.1| ATP dependent DNA ligase [Burkholderia sp. Ch1-1] gb|EFG73308.1| ATP dependent DNA ligase [Burkholderia sp. Ch1-1] Length = 558 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/560 (61%), Positives = 415/560 (74%), Gaps = 21/560 (3%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 M+ F+ LY LDATTST KL AL YF A+P DAAWA YFLAGGKPRQ+VPT LL + Sbjct: 1 MKRFAALYTALDATTSTHDKLEALTSYFAAAEPEDAAWASYFLAGGKPRQSVPTRLLSEI 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A E A + WLFEE Y +VGDLAETIAHILPPA ++ LGL +W+E R+ LRGAAPE + Sbjct: 61 ARERAGLPAWLFEESYHAVGDLAETIAHILPPAQRNSELGLTQWIEHRVLTLRGAAPEEL 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R L WDELDW GRFLL+KLIGGGFRVGV+R LV RALA VA +D K +AQRMVGWTD Sbjct: 121 RTRLINYWDELDWGGRFLLTKLIGGGFRVGVARQLVVRALAEVAGVDHKRIAQRMVGWTD 180 Query: 181 GRARPDAERFARLIAPADSADQPLQG--------GQPYPFFLAHPLLDAPATLGPIQQWQ 232 R +PDA R+ RLIAP ++D G G PYPFFLAHPL PATLG QWQ Sbjct: 181 SRQKPDAVRYLRLIAPEATSDDAQSGAPQHDSDLGLPYPFFLAHPLQADPATLGDPSQWQ 240 Query: 233 VEWKYDGIRAQLVRRHGQNWLWSRGEELITERFPELAAL--PLPDGTVIDGEIVIRHPDA 290 +EWK+DGIRAQLV+R G+ WLWSRGE+LIT+RFPE+AAL LP+G VIDGEI+ P A Sbjct: 241 IEWKWDGIRAQLVKRGGRVWLWSRGEDLITDRFPEVAALGEALPEGFVIDGEILAWEPGA 300 Query: 291 GLAAERVAPFSELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRRRLE 350 PF+ LQ RI RK L+ ++LA+ PA L+AYDLLE G DLR P ERR +L+ Sbjct: 301 SAP----LPFARLQPRIARKTLTKKILADSPATLLAYDLLEAHGKDLRMTPLAERRAQLD 356 Query: 351 AL---VGSHPAAALM-LAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRN 406 AL V S A L+ ++P ++A DW LA LR +R RGVEG+M+K+ ++ YG+GRT+ Sbjct: 357 ALATTVDSTLARDLLRVSPLVSASDWQVLAALRDESRARGVEGLMVKERESMYGVGRTKA 416 Query: 407 DGTWWKWKIDPYSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYS 466 GTWWKWKIDPY++DAVL+YAQ GHGRRASLYTD+TFA+WD EA R LVPFAKAYS Sbjct: 417 SGTWWKWKIDPYAVDAVLVYAQRGHGRRASLYTDFTFAVWD---EADGVRTLVPFAKAYS 473 Query: 467 GLTDAEIAVVDQVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILR 526 GLTD E+ VD ++RK+TIEKFGPVRSV P++VFEIGFEGI S RHK+G+AVRFPR+LR Sbjct: 474 GLTDEEMRQVDAIVRKTTIEKFGPVRSVTPTLVFEIGFEGIQASPRHKSGVAVRFPRMLR 533 Query: 527 QRLDKTVEQADTLATLRALL 546 R DK ++ ADTLA L+ + Sbjct: 534 WRTDKHIDDADTLAMLKGFI 553 >ref|YP_001889021.1| ATP-dependent DNA ligase [Burkholderia phytofirmans PsJN] gb|ACD19651.1| ATP dependent DNA ligase [Burkholderia phytofirmans PsJN] Length = 558 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/564 (61%), Positives = 414/564 (73%), Gaps = 29/564 (5%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 M+ F+ LY LDATTST KL AL YF A+P DAAWA YFLAGGKPRQ+VPT LL + Sbjct: 1 MKRFAALYTALDATTSTHDKLEALTSYFAVAEPEDAAWASYFLAGGKPRQSVPTRLLTEI 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A E A + WLFEE Y +VGDLAETIAHILPPA S+ LGL +W+E+R+ LRG +PE + Sbjct: 61 ARERAGLPAWLFEESYHAVGDLAETIAHILPPAQRSSELGLTQWIEQRVLTLRGVSPEEL 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R L WDELDW GRFLL+KLIGGGFRVGV+R LV RALA VA +D K +AQRMVGWTD Sbjct: 121 RTRLLSYWDELDWGGRFLLTKLIGGGFRVGVARQLVVRALAEVAGVDHKRIAQRMVGWTD 180 Query: 181 GRARPDAERFARLIAPADSADQPLQG--------GQPYPFFLAHPLLDAPATLGPIQQWQ 232 + +PDA R+ RLIAP + D+ G G PYPFFLAHPL PATLG QWQ Sbjct: 181 SQQKPDAARYLRLIAPEATGDETQAGDHPHESDLGLPYPFFLAHPLQADPATLGDPSQWQ 240 Query: 233 VEWKYDGIRAQLVRRHGQNWLWSRGEELITERFPELAAL--PLPDGTVIDGEIVIRHPDA 290 +EWK+DGIRAQLV+R G+ WLWSRGE+LIT+RFPE+AAL LPDG V+DGEI Sbjct: 241 IEWKWDGIRAQLVKRGGRVWLWSRGEDLITDRFPEVAALGEALPDGFVVDGEI------- 293 Query: 291 GLAAER----VAPFSELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERR 346 LA ER PF+ LQ RI RK L+ ++LA+ PA L+AYDLLE G DLR P ERR Sbjct: 294 -LAWERGDMAPLPFARLQPRIARKTLTKKILADSPATLLAYDLLEARGQDLRMTPLVERR 352 Query: 347 RRLEALV----GSHPAAALMLAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIG 402 RLEAL G+ L ++P ++A DW ALA LR +R RGVEG+M+K ++ YG+G Sbjct: 353 ARLEALAVSIEGTLAQDLLRVSPLVDAVDWQALAALRDESRARGVEGLMVKQRESMYGVG 412 Query: 403 RTRNDGTWWKWKIDPYSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFA 462 RT+ GTWWKWKIDPY+IDAVL+YAQ GHGRRASLYTD+TFA+WD EA R LVPFA Sbjct: 413 RTKASGTWWKWKIDPYAIDAVLLYAQRGHGRRASLYTDFTFAVWD---EANGVRTLVPFA 469 Query: 463 KAYSGLTDAEIAVVDQVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFP 522 KAYSGLTD E+ VD ++RK+TIEKFGPVRSV P++VFEIGFEGI S RHK+G+AVRFP Sbjct: 470 KAYSGLTDEEMRQVDAIVRKTTIEKFGPVRSVTPTLVFEIGFEGIQASPRHKSGVAVRFP 529 Query: 523 RILRQRLDKTVEQADTLATLRALL 546 R+LR R DK ++ ADTLA L+ + Sbjct: 530 RMLRWRTDKHIDDADTLAMLKGFI 553 >ref|YP_003908938.1| ATP dependent DNA ligase [Burkholderia sp. CCGE1003] gb|ADN59647.1| ATP dependent DNA ligase [Burkholderia sp. CCGE1003] Length = 561 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/563 (61%), Positives = 414/563 (73%), Gaps = 24/563 (4%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 M+ F+ LY LDATTST KL AL YF A+P DAAWA YFLAGGKPRQ+VPT LL + Sbjct: 1 MKRFAALYTALDATTSTHDKLEALTSYFSIAEPEDAAWASYFLAGGKPRQSVPTRLLTEF 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A E A + WLFEE Y +VGDLAETIAHILPPA S+ LGL +W+E+R+ PLRG APE + Sbjct: 61 ARERAGLPAWLFEESYHAVGDLAETIAHILPPAQRSSELGLTQWIEQRVLPLRGLAPEEL 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R LF WDELDW GRFLL+KLIGGGFRVGV+R LV RALA VA +D K +AQRMVGWTD Sbjct: 121 RTRLFSYWDELDWSGRFLLTKLIGGGFRVGVARQLVVRALAEVAGIDHKRIAQRMVGWTD 180 Query: 181 GRARPDAERFARLIAP--ADSADQPLQG---------GQPYPFFLAHPLLDAPATLGPIQ 229 R +PDA R+ RLIAP D A Q G PYPFFLAHPL P TLG Sbjct: 181 SRQKPDAARYLRLIAPEATDVAGDDAQHATERHDSDLGLPYPFFLAHPLQTEPGTLGDPS 240 Query: 230 QWQVEWKYDGIRAQLVRRHGQNWLWSRGEELITERFPELAAL--PLPDGTVIDGEIVIRH 287 +W +EWK+DGIRAQLV+R G+ WLWSRGE+LIT+RFPE+AAL LPDG VIDGEI+ Sbjct: 241 RWLIEWKWDGIRAQLVKRAGRVWLWSRGEDLITDRFPEVAALGEALPDGFVIDGEILAWE 300 Query: 288 PDAGLAAERVAPFSELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRR 347 P A PF+ LQ RI RK L+ ++LA+ PA L+AYDLLE G DLR P ERR Sbjct: 301 PGAAAP----LPFARLQPRIARKTLTKKVLADSPAALLAYDLLEAHGEDLRMAPLIERRA 356 Query: 348 RLEALVGS--HPAA--ALMLAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGR 403 RL++L S +P A L ++P + DW ALA LR +R RGVEG+MLK+ ++ YG+GR Sbjct: 357 RLDSLALSLENPLARDLLRVSPLVCGADWQALAALREESRARGVEGLMLKERESLYGVGR 416 Query: 404 TRNDGTWWKWKIDPYSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAK 463 T+ GTWWKWKIDPY++DAVL+YAQ GHGRRASLYTD+TFA+WD EA R LVPFAK Sbjct: 417 TKASGTWWKWKIDPYAVDAVLVYAQRGHGRRASLYTDFTFAVWD---EANGVRTLVPFAK 473 Query: 464 AYSGLTDAEIAVVDQVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPR 523 AYSGLTD E+ VD ++RK+TIEKFGPVRSV P++VFEIGFEGI SSRHK+G+AVRFPR Sbjct: 474 AYSGLTDEEMRQVDAIVRKTTIEKFGPVRSVTPTLVFEIGFEGIQASSRHKSGVAVRFPR 533 Query: 524 ILRQRLDKTVEQADTLATLRALL 546 +LR R DK ++ ADTLA L+ + Sbjct: 534 MLRWRTDKHIDDADTLAMLKGFI 556 >ref|YP_553997.1| ATP-dependent DNA ligase [Burkholderia xenovorans LB400] gb|ABE34647.1| DNA ligase (ATP) [Burkholderia xenovorans LB400] Length = 558 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/560 (61%), Positives = 415/560 (74%), Gaps = 21/560 (3%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 M+ F+ LY LDATTST KL AL YF A+P DAAWA YFLAGGKPRQ+VPT LL + Sbjct: 1 MKRFAALYTALDATTSTHDKLEALTSYFAVAEPEDAAWASYFLAGGKPRQSVPTRLLSEI 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A E A + WLFEE Y +VGDLAETIAHILPPA ++ LGL +W+E R+ LRGAAPE + Sbjct: 61 ARERAGLPAWLFEESYHAVGDLAETIAHILPPAQRNSELGLTQWIEHRVLTLRGAAPEEL 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R L WDELDW GRFLL+KLIGGGFRVGV+R LV RALA VA +D K +AQRMVGWTD Sbjct: 121 RTRLISYWDELDWGGRFLLTKLIGGGFRVGVARQLVVRALAEVAGVDHKRIAQRMVGWTD 180 Query: 181 GRARPDAERFARLIAPADSADQPLQG--------GQPYPFFLAHPLLDAPATLGPIQQWQ 232 + +PDA R+ RLIAP ++D G G PYPFFLAHPL PATLG QWQ Sbjct: 181 SQQKPDAARYLRLIAPEATSDDAQSGAPQHDSDLGLPYPFFLAHPLQADPATLGDPSQWQ 240 Query: 233 VEWKYDGIRAQLVRRHGQNWLWSRGEELITERFPELAAL--PLPDGTVIDGEIVIRHPDA 290 +EWK+DGIRAQLV+R G+ WLWSRGE+LIT+RFPE+AAL LP+G VIDGEI+ P Sbjct: 241 IEWKWDGIRAQLVKRGGRVWLWSRGEDLITDRFPEVAALGEALPEGFVIDGEILAWEP-- 298 Query: 291 GLAAERVAPFSELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRRRLE 350 A PF+ LQ RI RK L+ ++LA+ PA L+AYDLLE G DLR P ERR +L+ Sbjct: 299 --GASAPLPFARLQPRIARKTLTKKILADSPATLLAYDLLEAHGKDLRMTPLAERRAQLD 356 Query: 351 AL---VGSHPAAALM-LAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRN 406 AL V S A L+ ++P ++A DW ALA LR +R RGVEG+M+K+ ++ YG+GRT+ Sbjct: 357 ALATTVDSTLARDLLRVSPLVSAPDWQALAALRDESRARGVEGLMVKERESMYGVGRTKA 416 Query: 407 DGTWWKWKIDPYSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYS 466 GTWWKWKIDPY++DAVL+YAQ GHGRRASLYTD+TFA+WD EA R LVPFAKAYS Sbjct: 417 SGTWWKWKIDPYAVDAVLVYAQRGHGRRASLYTDFTFAVWD---EADGVRTLVPFAKAYS 473 Query: 467 GLTDAEIAVVDQVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILR 526 GLTD E+ VD ++RK+TIEKFGPVRSV P++VFEIGFEGI S RHK+G+AVRFPR+LR Sbjct: 474 GLTDEEMRQVDAIVRKTTIEKFGPVRSVTPTLVFEIGFEGIQASPRHKSGVAVRFPRMLR 533 Query: 527 QRLDKTVEQADTLATLRALL 546 R DK ++ ADTL L+ + Sbjct: 534 WRTDKHIDDADTLPMLKGFI 553 >ref|YP_003607429.1| ATP dependent DNA ligase [Burkholderia sp. CCGE1002] gb|ADG17918.1| ATP dependent DNA ligase [Burkholderia sp. CCGE1002] Length = 557 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/559 (61%), Positives = 410/559 (73%), Gaps = 20/559 (3%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 M+ F+ LY LDATTST KLAAL YF A+P DAAWA YFLAGGKPRQ VPT LL Sbjct: 1 MKRFAALYTALDATTSTHDKLAALTSYFSAAEPEDAAWASYFLAGGKPRQLVPTRLLTDI 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A E A + EWLFEE Y +VGDLAETIAHILPPAS + LGL +W+E+R+ PLRG P+ + Sbjct: 61 ARERAGLPEWLFEESYHAVGDLAETIAHILPPASRDSELGLTQWIEQRMLPLRGLPPDEL 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R L WDELDW GRFLL+KLIGGGFRVGV+R LV RALA VA +D K +AQRMVGWTD Sbjct: 121 RTRLLSYWDELDWGGRFLLTKLIGGGFRVGVARQLVVRALAEVAGVDHKRIAQRMVGWTD 180 Query: 181 GRARPDAERFARLIAPADSADQPLQG-------GQPYPFFLAHPLLDAPATLGPIQQWQV 233 + +PDA R+ RLIAP D G PYPFFLAHPL PATLG W + Sbjct: 181 SQQKPDAARYLRLIAPQTDDDTQAHAPEHDSDLGLPYPFFLAHPLQTDPATLGDPGHWLI 240 Query: 234 EWKYDGIRAQLVRRHGQNWLWSRGEELITERFPELAAL--PLPDGTVIDGEIVIRHPDAG 291 EWK+DGIRAQLV+R G+ WLWSRGE+LIT+RFPE+AAL LPDG VIDGEI+ P A Sbjct: 241 EWKWDGIRAQLVKRGGRVWLWSRGEDLITDRFPEVAALGESLPDGYVIDGEILAWEPGAA 300 Query: 292 LAAERVAPFSELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRRRLEA 351 PF+ LQ RI RK L+ ++LA+ PA L+AYDLLE +G DLR P +RR RL+A Sbjct: 301 TP----LPFARLQPRIARKTLTRKILADSPAALLAYDLLEANGQDLRMSPLADRRARLDA 356 Query: 352 LV----GSHPAAALMLAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRND 407 L G+ L ++P ++ DW ALA LR +R RGVEG+MLK+ ++ YG+GRT+ Sbjct: 357 LSASVEGTLARGLLRVSPLVSGADWSALAALREESRARGVEGLMLKERESMYGVGRTKAS 416 Query: 408 GTWWKWKIDPYSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYSG 467 GTWWKWKI+PY++DAVL+YAQ GHGRRASLYTDYTFA+WD EA R LVPFAKAYSG Sbjct: 417 GTWWKWKIEPYAVDAVLVYAQRGHGRRASLYTDYTFAVWD---EADGVRTLVPFAKAYSG 473 Query: 468 LTDAEIAVVDQVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILRQ 527 LTD E+ VD ++RK+T++KFGPVRSV P++VFEIGFEGI SSRHK+G+AVRFPR+LR Sbjct: 474 LTDEEMHRVDAIVRKTTVDKFGPVRSVTPTLVFEIGFEGIQASSRHKSGVAVRFPRMLRW 533 Query: 528 RLDKTVEQADTLATLRALL 546 R DK ++ ADTLA L+ + Sbjct: 534 RTDKHIDDADTLAMLKGFI 552 >ref|ZP_02881687.1| ATP dependent DNA ligase [Burkholderia graminis C4D1M] gb|EDT13116.1| ATP dependent DNA ligase [Burkholderia graminis C4D1M] Length = 561 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/563 (61%), Positives = 409/563 (72%), Gaps = 24/563 (4%) Query: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 M+ F+ LY LDATTST KL AL YF A+P DAAWA YFLAGGKPRQ+VPT LL + Sbjct: 1 MKRFAALYTALDATTSTHDKLEALTSYFSVAEPEDAAWASYFLAGGKPRQSVPTRLLTEF 60 Query: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWMEERIAPLRGAAPETI 120 A E A + WLFEE Y +VGDLAETIAHILPPA S+ LGL +W+E+R+ LRG P+ + Sbjct: 61 ARERAGLPAWLFEESYHAVGDLAETIAHILPPAQRSSELGLTQWIEQRVLILRGLPPDEL 120 Query: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 R LF WDELDW GRFLL+KLIGGGFRVGV+R LV RALA VA +D K +AQRMVGWTD Sbjct: 121 RTRLFSYWDELDWSGRFLLTKLIGGGFRVGVARQLVVRALAEVAGVDHKRIAQRMVGWTD 180 Query: 181 GRARPDAERFARLIAP------ADSADQPLQG-----GQPYPFFLAHPLLDAPATLGPIQ 229 R +PDA R+ RLIAP D A P + G PYPFFLAHPL P TLG Sbjct: 181 SRQKPDAARYLRLIAPEASELAGDDAQHPTERHDSDLGLPYPFFLAHPLQADPETLGDPS 240 Query: 230 QWQVEWKYDGIRAQLVRRHGQNWLWSRGEELITERFPELAAL--PLPDGTVIDGEIVIRH 287 W +EWK+DGIRAQLV+R G+ WLWSRGE+LIT+RFPE+ AL LPDG VIDGEI+ Sbjct: 241 HWLIEWKWDGIRAQLVKRAGRVWLWSRGEDLITDRFPEVTALGEALPDGFVIDGEILAWE 300 Query: 288 PDAGLAAERVAPFSELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQCERRR 347 P A PF+ LQ RI RK L+ ++LA+ PA L+AYDLLE DG DLR P ERR Sbjct: 301 P----GAIAPLPFARLQPRIARKTLTKKILADSPAALLAYDLLEADGKDLRMTPLVERRA 356 Query: 348 RLEALVGSHPAA----ALMLAPTLNAKDWDALAQLRASARERGVEGMMLKDIDARYGIGR 403 RL+AL S L ++P ++A DW LA LR +R RGVEG MLK+ ++ YG+GR Sbjct: 357 RLDALAASLDTTLARDLLRVSPLVSAADWQTLAALREESRARGVEGFMLKERESLYGVGR 416 Query: 404 TRNDGTWWKWKIDPYSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAK 463 T+ GTWWKWKIDPY++DAVL+YAQ GHGRRASLYTD+TFA+WD EA R LVPFAK Sbjct: 417 TKASGTWWKWKIDPYAVDAVLVYAQRGHGRRASLYTDFTFAVWD---EANGVRTLVPFAK 473 Query: 464 AYSGLTDAEIAVVDQVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPR 523 AYSGLTD E+ VD ++RK+TIEKFGPVRSV P++VFEIGFEGI S+RHK+G+AVRFPR Sbjct: 474 AYSGLTDEEMRQVDAIVRKTTIEKFGPVRSVTPTLVFEIGFEGIQASTRHKSGVAVRFPR 533 Query: 524 ILRQRLDKTVEQADTLATLRALL 546 +LR R DK ++ ADTLA L+ + Sbjct: 534 MLRWRTDKHIDDADTLAMLKGFI 556