BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0284.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774193.1| hypothetical protein Hsero_0766 [Herbaspiril...   301   2e-80
ref|YP_003774191.1| hypothetical protein Hsero_0764 [Herbaspiril...   117   7e-25

>ref|YP_003774193.1| hypothetical protein Hsero_0766 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62285.1| hypothetical protein Hsero_0766 [Herbaspirillum seropedicae SmR1]
          Length = 164

 Score =  301 bits (771), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/147 (98%), Positives = 146/147 (99%)

Query: 1   MSHEHWMRRTALLQAVLAMGLALLLCLSSFSARAQTNPDLKALVDHLKFVIPDETALVDP 60
           MSHEHWMRRTALLQAVLAMGLALLLCLS+FSARAQTNPDLKALVDHLKFVIPDETALVDP
Sbjct: 18  MSHEHWMRRTALLQAVLAMGLALLLCLSTFSARAQTNPDLKALVDHLKFVIPDETALVDP 77

Query: 61  QQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASADEFS 120
           QQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASADEFS
Sbjct: 78  QQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGKGVERPEFKKVMEHPPASADEFS 137

Query: 121 DAMIGLPQSVYDSGTPLWDNSTYAKGR 147
           DAMIGLPQSVYDSGTPLWDNS YAKGR
Sbjct: 138 DAMIGLPQSVYDSGTPLWDNSAYAKGR 164


>ref|YP_003774191.1| hypothetical protein Hsero_0764 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62283.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 312

 Score =  117 bits (292), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 73/102 (71%)

Query: 39  DLKALVDHLKFVIPDETALVDPQQLERFVAQYQKRAAAAGLRDIDRQTAYVLVALYTSGK 98
           DL  LV+HLKFVIPDET  + P+ L  FVA+YQ+ A AAGL DIDRQ  YVL+ALYTSG+
Sbjct: 204 DLDTLVNHLKFVIPDETRKLAPRTLLDFVAKYQQEAVAAGLDDIDRQAQYVLLALYTSGR 263

Query: 99  GVERPEFKKVMEHPPASADEFSDAMIGLPQSVYDSGTPLWDN 140
           G   P  + +M  PPAS D + +A+  +P+ V+++G PLW+ 
Sbjct: 264 GTAHPLMQALMADPPASLDAYYEAIQAMPEEVWEAGAPLWEQ 305