BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0252.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774158.1| hypothetical protein Hsero_0731 [Herbaspiril... 574 e-162 ref|YP_004194908.1| family 3 extracellular solute-binding protei... 174 2e-41 ref|YP_004196616.1| family 3 extracellular solute-binding protei... 172 7e-41 ref|ZP_01132973.1| hypothetical protein PTD2_13114 [Pseudoaltero... 124 1e-26 ref|YP_003158626.1| hypothetical protein Dbac_2126 [Desulfomicro... 115 8e-24 ref|NP_969036.1| hypothetical protein Bd2194 [Bdellovibrio bacte... 112 6e-23 ref|YP_064993.1| hypothetical protein DP1257 [Desulfotalea psych... 97 2e-18 ref|NP_968214.1| hypothetical protein Bd1313 [Bdellovibrio bacte... 95 1e-17 ref|NP_902132.1| hypothetical protein CV_2462 [Chromobacterium v... 94 2e-17 ref|YP_609719.1| hypothetical protein PSEEN4247 [Pseudomonas ent... 89 1e-15 >ref|YP_003774158.1| hypothetical protein Hsero_0731 [Herbaspirillum seropedicae SmR1] gb|ADJ62250.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust. Identities = 281/281 (100%), Positives = 281/281 (100%) Query: 1 MWSRLLLLLLTCLPLLTLPPAVRASEPDNQIIWGRHHVPPYMIREGEWAGRGIFDLTLGV 60 MWSRLLLLLLTCLPLLTLPPAVRASEPDNQIIWGRHHVPPYMIREGEWAGRGIFDLTLGV Sbjct: 1 MWSRLLLLLLTCLPLLTLPPAVRASEPDNQIIWGRHHVPPYMIREGEWAGRGIFDLTLGV 60 Query: 61 VTSHLPQYQHVDLAAPFPRVISEIRKGSHWCYIGALRTSEREAYAYFSLPTSIFLPLRVI 120 VTSHLPQYQHVDLAAPFPRVISEIRKGSHWCYIGALRTSEREAYAYFSLPTSIFLPLRVI Sbjct: 61 VTSHLPQYQHVDLAAPFPRVISEIRKGSHWCYIGALRTSEREAYAYFSLPTSIFLPLRVI 120 Query: 121 VRRDRLAQFSHPQSLKSLLQNRQLVTSVMRDRSYSPTVDRLLAEYPARENYSEQIEAISM 180 VRRDRLAQFSHPQSLKSLLQNRQLVTSVMRDRSYSPTVDRLLAEYPARENYSEQIEAISM Sbjct: 121 VRRDRLAQFSHPQSLKSLLQNRQLVTSVMRDRSYSPTVDRLLAEYPARENYSEQIEAISM 180 Query: 181 LLAGRIDYMIELPLLAFYQARLLGHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQV 240 LLAGRIDYMIELPLLAFYQARLLGHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQV Sbjct: 181 LLAGRIDYMIELPLLAFYQARLLGHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQV 240 Query: 241 NQVLLAERPTPAYRAMVERWHDPESTAEIRRLYDKVFLKTP 281 NQVLLAERPTPAYRAMVERWHDPESTAEIRRLYDKVFLKTP Sbjct: 241 NQVLLAERPTPAYRAMVERWHDPESTAEIRRLYDKVFLKTP 281 >ref|YP_004194908.1| family 3 extracellular solute-binding protein [Desulfobulbus propionicus DSM 2032] gb|ADW17617.1| extracellular solute-binding protein family 3 [Desulfobulbus propionicus DSM 2032] Length = 340 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 154/293 (52%), Gaps = 19/293 (6%) Query: 2 WSRLLLLLLTCLPL---LTLPPAVRASEPDNQIIWGRHHVPPYMIREGEWAGRGIFDLTL 58 W LL +T + L L P R + I W +PP++I+EG +G D+ Sbjct: 51 WRAANLLAMTLVALVFALPFPAGAR-----DTITWMEVDMPPFLIQEGIDRNQGYGDVVS 105 Query: 59 GVVTSHLPQYQHVDLAAPFPRVISEIRKGSHWCYIGALRTSEREAYAYFSLPTSIFLPLR 118 ++ LP+Y H ++ R S KG H C +G RT EREA+ +FS+PT + +P Sbjct: 106 AILRQRLPEYDHQEMVTNAIRRFSAFEKGEHVCMVGLYRTPEREAFMHFSIPTFLTMPAA 165 Query: 119 VIVRRDRLAQFSHPQ--SLKSLLQNRQLVTSVMRDRSYSPTVDRLLAEYPAREN---YSE 173 +IVR+D+LA+F SL ++L N L +DRSY +VD +L + REN ++ Sbjct: 166 LIVRKDKLARFGGGPRISLDAVLGNPDLAIGFSKDRSYGTSVDAVLKAHGQRENLLLFTG 225 Query: 174 QI---EAISMLLAGRIDYMIELPLLAFYQARLLGHADELAAVRTEEAD---EVVFNRVMC 227 Q +ML+ R+D +I LP A YQA LG ++LA + EE E V C Sbjct: 226 QKLPPNFFAMLMRDRLDGLIGLPDEALYQAEQLGLREQLATLLIEENQQGYEGWMCAVGC 285 Query: 228 PRNAWGRQVIDQVNQVLLAERPTPAYRAMVERWHDPESTAEIRRLYDKVFLKT 280 + WG+ VID++N +L+ ERP+ YR ERW D S R LY +VFL+T Sbjct: 286 AKTEWGKAVIDKINAILIQERPSERYRQAYERWLDANSKQRYRHLYQQVFLRT 338 >ref|YP_004196616.1| family 3 extracellular solute-binding protein [Desulfobulbus propionicus DSM 2032] gb|ADW19325.1| extracellular solute-binding protein family 3 [Desulfobulbus propionicus DSM 2032] Length = 292 Score = 172 bits (435), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 156/289 (53%), Gaps = 19/289 (6%) Query: 3 SRLLLLLLTCLPLLTLPPAVRASEPDNQIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVT 62 SR+L+LLL C+P + PA + + W PP+ I+ G +G D+ ++ Sbjct: 10 SRMLVLLLLCIP--SPLPA------KDTVTWMEAVFPPFYIQSGANQEQGYGDIVTDILQ 61 Query: 63 SHLPQYQHVDLAAPFPRVISEIRKGSHWCYIGALRTSEREAYAYFSLPTSIFLPLRVIVR 122 HL Y+H ++ R + ++G C G +T+ER+A+ YFS+P+ I LP +I++ Sbjct: 62 EHLSDYEHEEVITNITRHFYKFKQGEKVCSAGLYKTAERDAFMYFSIPSFITLPPVLIIK 121 Query: 123 RDRLAQFSHPQS--LKSLLQNRQLVTSVMRDRSYSPTVDRLLAEYPARENYSE------Q 174 ++ +A F H + L +L N+ L+ + +DRSY T+D +L ++ + N E Sbjct: 122 KENIANFGHQTTVPLADVLANKGLMIGLAKDRSYGKTLDAILEQHKGQGNLVEFTGQELS 181 Query: 175 IEAISMLLAGRIDYMIELPLLAFYQARLLGHADELAAVRTEEADEVV---FNRVMCPRNA 231 MLL R+D +I LP A YQA +G ++ + E + + V C +NA Sbjct: 182 FNLFQMLLRNRLDGIIGLPEEALYQAEQMGIRGQVLTLTLAENLQNYDGWMSSVGCSKNA 241 Query: 232 WGRQVIDQVNQVLLAERPTPAYRAMVERWHDPESTAEIRRLYDKVFLKT 280 WG+++I+++N +LL +RPT YRA ERW D S + R+ Y +VFLKT Sbjct: 242 WGKEMIEKINAILLEQRPTERYRAAYERWLDAGSIEQYRKAYSEVFLKT 290 >ref|ZP_01132973.1| hypothetical protein PTD2_13114 [Pseudoalteromonas tunicata D2] gb|EAR29761.1| hypothetical protein PTD2_13114 [Pseudoalteromonas tunicata D2] Length = 268 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 118/257 (45%), Gaps = 9/257 (3%) Query: 30 QIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAAPFPRVISEIRKGSH 89 QIIW +H PP I GE+ +G DL L + LPQY+HV + EIR + Sbjct: 11 QIIWQLNHAPPSTIVHGEFKNKGFIDLILKEIIDQLPQYEHVIEVSTLASSSFEIRAKKN 70 Query: 90 WCYIGALRTSEREAYAYFSLPTSIFLPLRVIVRRDRLAQFSHPQSLKSLLQNRQLVTSVM 149 C T ER+ + FS SI P IV A +L+ LL N+ L + Sbjct: 71 VCLPALFDTPERQKFMVFS-NASIAHPSNRIVLLKSKALTMPASNLRHLLANKALFIGLD 129 Query: 150 RDRSYSPTVDRLLAEY-PARENYSEQIEA----ISMLLAGRIDYMIELPLLAFY--QARL 202 + RSY +D +LA++ PA Y + E+ I M++AGR+DY + P Y Q+ Sbjct: 130 QARSYGSYIDAILADFEPADNIYRRESESPNGLIEMVVAGRLDYTLAYPFQIQYYLQSHG 189 Query: 203 LGHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVNQVLLAERPTPAYR-AMVERWH 261 + L + E + +V C WGR VI QVN+VL +PT AY+ AM W Sbjct: 190 FNGDNPLIEQKIEGLEPFSMGKVACADTPWGRNVIKQVNEVLARIKPTKAYQNAMTTWWR 249 Query: 262 DPESTAEIRRLYDKVFL 278 + Y VFL Sbjct: 250 QSAADPTFVEYYQNVFL 266 >ref|YP_003158626.1| hypothetical protein Dbac_2126 [Desulfomicrobium baculatum DSM 4028] gb|ACU90210.1| conserved hypothetical protein [Desulfomicrobium baculatum DSM 4028] Length = 284 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/273 (29%), Positives = 134/273 (49%), Gaps = 12/273 (4%) Query: 11 TCLPLLTLPPAVRASEPDNQIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQH 70 T L L+ P V ++ +++ W PP I G +AG+GI D+ ++ L +++H Sbjct: 9 TLLFLVVFLPCVAMAQSRDEVTWMHAEFPPLRITSGPYAGQGISDMIHELMGRELVEFEH 68 Query: 71 VDLAAPFPRVISEIRKGSHWCYIGALRTSEREAYAYFSLPTSIFLPLRVIVR---RDRLA 127 + A R ++ + G + +G + S+R+ +S+P + P+ ++VR +D L Sbjct: 69 AIVTANLSRTLNWMENGRNVLAVGIIPNSQRDRVMQYSVPCVLVPPVCLVVRAGEQDSLG 128 Query: 128 QFSHPQSLKSLLQNRQLVTSVMRDRSYSPTVDRLLAEYP-----ARENYSEQIEAI-SML 181 H SL+ + ++L V DRSY P +D +L P S E++ ML Sbjct: 129 LGGHV-SLRDFIARKRL--GVAADRSYGPELDSVLLSSPDLSRVVVNQGSNLFESLLEML 185 Query: 182 LAGRIDYMIELPLLAFYQARLLGHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVN 241 L GR+D ++ P A Y AR+ D + E+ + R+ PR AWG +ID+VN Sbjct: 186 LLGRVDGILAYPFEAVYSARMKNLEDRITIAPLRESMVPLQGRIAAPRTAWGTAMIDRVN 245 Query: 242 QVLLAERPTPAYRAMVERWHDPESTAEIRRLYD 274 ++LL R + YR +ERW P + R +YD Sbjct: 246 EILLRNRGSLQYRQALERWLTPSVVEDFRGMYD 278 >ref|NP_969036.1| hypothetical protein Bd2194 [Bdellovibrio bacteriovorus HD100] emb|CAE80029.1| hypothetical protein predicted by Glimmer/Critica [Bdellovibrio bacteriovorus HD100] Length = 314 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 78/260 (30%), Positives = 127/260 (48%), Gaps = 12/260 (4%) Query: 31 IIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAAPFPRVISEIRKGSHW 90 I W PY I+EG A G D ++ +L YQ D+ A P+ I + + Sbjct: 45 IPWAVTDWEPYYIQEGSNANMGRVDRLRRILEENLKDYQLTDVQADMPKTIELWKLDKNI 104 Query: 91 CYIGALRTSEREAYAYFS-LPTSIFLPLRVIVRRDRLAQFSHPQ-SLKSLLQNRQLVTSV 148 C AL T ERE AYF+ L + L ++ R ++ + S P+ SLK L++N+ Sbjct: 105 CSGSALMTPEREQLAYFTALSFQVPLEYVLVTARAKVLEGSPPEVSLKELIKNKMWRGVF 164 Query: 149 MRDRSYSPTVDRLLAEYPARENYSEQIEAIS--------MLLAGRIDYMIEL-PLLAFYQ 199 ++DRSY P +DRLL + AR+ + ++++ M+ R DYMIE ++ Y Sbjct: 165 VKDRSYGPEIDRLLKDVSARDGHLTLKKSVTDGYTSLMKMVEKKRFDYMIEYEAVVRAYN 224 Query: 200 ARLLGHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVNQVLLAERPTPAYRAMVER 259 ++ L E +F+ + C +N WGR V+ +V+Q+L T Y+ VE Sbjct: 225 EKIFPAKPLLTRAVKESRPSAIFH-LACTKNPWGRDVVRKVDQLLQKLALTNEYQRAVES 283 Query: 260 WHDPESTAEIRRLYDKVFLK 279 W +P+ + R+L D+ + K Sbjct: 284 WLEPDLQKKNRKLLDEFYQK 303 >ref|YP_064993.1| hypothetical protein DP1257 [Desulfotalea psychrophila LSv54] emb|CAG35986.1| unknown protein [Desulfotalea psychrophila LSv54] Length = 271 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 15/256 (5%) Query: 16 LTLPPAVRASEPDNQIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAA 75 + + P ++A + + W PP I G + G+G DL G +T L Y +A Sbjct: 1 MLIIPEIQARQS---LTWLAADAPPMCICRGAYRGQGYLDLIQGQITEKLSSYDVDKNSA 57 Query: 76 PFPRVISEIRKGSHWCYIGALRTSEREAYAYFSLPTSIFLPLRVIVRRDRLAQFSHPQ-- 133 R + G+ C IG +T++R+ AY+S P LP ++V RD+ A FS Q Sbjct: 58 NISRHYELWKDGAEVCSIG-YKTADRQKIAYYSQPILRTLPAVLVVSRDKAALFSGLQVI 116 Query: 134 SLKSLLQNRQLVTSVMRDRSYSPTVDRLLAEYPAREN-YSEQIEAIS-----MLLAGRID 187 SLK LLQ +V RSY +D++ +Y ++N ++ + + IS ML RID Sbjct: 117 SLKKLLQRGDIVLGRSHGRSYGGPLDKIFNQYGTKKNIFNYEGDGISRNFFEMLALNRID 176 Query: 188 YMIELPLLAFYQARLLGHADELAAVRTEEADEVVFNR---VMCPRNAWGRQVIDQVNQVL 244 ++ P Y + LG + + EE V V+C + WG++VI +V++++ Sbjct: 177 AIVCQPSELIYLTKRLGLSGQFLTFDIEENRGTVEANSVYVICSKTDWGKRVISRVDKLV 236 Query: 245 LAERPTPAYRAMVERW 260 + + E W Sbjct: 237 ADPQIKLHFHYAYEYW 252 >ref|NP_968214.1| hypothetical protein Bd1313 [Bdellovibrio bacteriovorus HD100] emb|CAE79207.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] Length = 285 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 111/259 (42%), Gaps = 20/259 (7%) Query: 30 QIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAAPFPRVISEIRKGSH 89 I W R PP I G + GRG+ D + LPQY H + PRV+ E + Sbjct: 23 DITWIRWDDPPIFIFSGPFKGRGLLDNVESELRRKLPQYTHKTIEGTVPRVLKEAEAKAP 82 Query: 90 WCYIGALRTSEREAYAYFSLPTSIFLPLRVIVRRDRLAQFSH--PQSLKSLLQNRQLVTS 147 C G L T E YFS P + +++ + RL + + P SL+ L +++ Sbjct: 83 VCNAGWLDTPEWSKLFYFSRPVFVIPANGILLPKSRLVEVRNLAPYSLQKFLDDKK-DWK 141 Query: 148 VMRDRSYSPTVDRLLAEYPARENYSEQIEAIS---------MLLAGRIDYMIELPLLAFY 198 + R Y +D +L + NY + + I+ ML + RI Y + P A Y Sbjct: 142 LGVGRLYGVGIDDVL----IKNNYQKNPQVITIATSLRVHKMLHSNRIQYTLGYPFEAVY 197 Query: 199 QARLL-GHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVNQVLLAERPTPAYRAMV 257 +LL G +E+ + E V V CP+ WG +VI ++QVL + V Sbjct: 198 YNKLLDGKNNEVVHIPVTENAARVEVVVACPKTPWGAKVIADIDQVLQNRALLEKFEKGV 257 Query: 258 ERW---HDPESTAEIRRLY 273 +RW D E A R+ + Sbjct: 258 DRWLSIEDQEKLAPARKEF 276 >ref|NP_902132.1| hypothetical protein CV_2462 [Chromobacterium violaceum ATCC 12472] gb|AAQ60133.1| hypothetical protein CV_2462 [Chromobacterium violaceum ATCC 12472] Length = 303 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 17/260 (6%) Query: 30 QIIWGRHH-VPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAAPFPRVISEIRKGS 88 QI W P ++IR+G+ G D+ L ++ + P+ +H + R E+++GS Sbjct: 33 QITWVLSDWAPNFIIRDGK-PTTGQNDVYLKLIIARWPEAEHRFMVMSTARSTLELQRGS 91 Query: 89 HWCYIGALRTSEREAYAYFSLPTSIFLPLRVIVRRDRLAQFSHPQS----LKSLLQNRQL 144 C + + T ERE +A+F+L T + LPL++++RR+ AQ ++ L+ L+ L Sbjct: 92 QLCRMNLIPTPEREKFAFFTL-THMQLPLQLVIRRELAAQAPLNEAGEVVLEKLILKPGL 150 Query: 145 VTSVMRDRSYSPTVDRLLAEYPARENYSE------QIEAISMLLAGRIDYMIEL-PLLAF 197 RSY+ +DRLLA+ N + +L GR DY ++ P + Sbjct: 151 RGITAAGRSYTAEIDRLLADRKGESNVRDIPNLPSNDGLFKLLELGRADYTLDYEPNFKY 210 Query: 198 YQARLLGHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVNQVLLAERPTPAYRAMV 257 + + H LA++ A + + CPR WGR + +++Q+L PAYR Sbjct: 211 REEQNRDHP--LASLPIAGAALIPVG-IACPRTRWGRMAVMKIDQLLSEAVADPAYRQAQ 267 Query: 258 ERWHDPESTAEIRRLYDKVF 277 +RW PES R D+ + Sbjct: 268 DRWLSPESVQRYRVELDRFY 287 >ref|YP_609719.1| hypothetical protein PSEEN4247 [Pseudomonas entomophila L48] emb|CAK16935.1| conserved hypothetical protein; putative signal peptide [Pseudomonas entomophila L48] Length = 290 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 118/256 (46%), Gaps = 15/256 (5%) Query: 20 PAVRASEPDNQIIWGRHHVPPYMIREGEWAGRGIFDLTLGVVTSHLPQYQHVDLAAPFPR 79 PA +A E +++W +PP+ I EG G+G+ D L ++ + +P+Y+H + R Sbjct: 20 PAAQAKE---RLLWLVRDLPPFTIFEGAAKGQGVIDQLLPLLIAQMPEYEHSIVRVNRAR 76 Query: 80 VISEIRKGSHWCYIGALRTSEREAYAYFSLPTSIFLPLRVIVRRDR---LAQFSHPQ--S 134 + +++ S C L T ERE Y +FSL + L ++VRR LA F Q Sbjct: 77 GLQMLQEPSFTCDPTLLWTPEREKYVHFSLASLGVLSSGLVVRRQDEALLAPFLDEQQVD 136 Query: 135 LKSLLQNRQLVTSVMRDRSYSPTVDRLLAEYPA---RENYSEQIEA--ISMLLAGRIDYM 189 LK LL QL ++ +RSYS VD +L + P +Y A + M GR+ + Sbjct: 137 LKRLLNQTQLKLGIVAERSYSAQVDEILRQLPDSAFSRHYGNDATASLLQMQQLGRLQLV 196 Query: 190 IEL-PLLAFYQARLLGHADELAAVRTEEADEVVFNRVMCPRNAWGRQVIDQVNQVLLAER 248 + P + + + G D+ + + F V C GR+ I V+Q LL E Sbjct: 197 LGYWPEMRYLIQQQGGSLDDYRFHPIQGVNRYQFLHVGCSDTPLGREAIAHVDQ-LLPEL 255 Query: 249 PTPAYRAMVERWHDPE 264 T + RW DPE Sbjct: 256 RTDTLPGLYARWLDPE 271