BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0228.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774136.1| hypothetical protein Hsero_0709 [Herbaspiril...   241   3e-62

>ref|YP_003774136.1| hypothetical protein Hsero_0709 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62228.1| hypothetical protein Hsero_0709 [Herbaspirillum seropedicae SmR1]
          Length = 125

 Score =  241 bits (615), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MASKKIASVLIATTLLASAAAVSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIANANSAPV 60
           MASKKIASVLIATTLLASAAAVSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIANANSAPV
Sbjct: 1   MASKKIASVLIATTLLASAAAVSTPAMAHDRGGNGVAIAAGIIGAVAIGSLIANANSAPV 60

Query: 61  YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRYYAPPPPPRPVRYVERTEVRTYRYDERPDY 120
           YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRYYAPPPPPRPVRYVERTEVRTYRYDERPDY
Sbjct: 61  YQAPPQQVYYEAPQPVYYQPPQQVVYEQPRYYAPPPPPRPVRYVERTEVRTYRYDERPDY 120

Query: 121 YYYGR 125
           YYYGR
Sbjct: 121 YYYGR 125