BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0195.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774104.1| outer membrane W protein [Herbaspirillum ser... 328 5e-88 ref|YP_001351718.1| outer membrane protein W [Janthinobacterium ... 283 2e-74 ref|YP_001098385.1| outer membrane protein W [Herminiimonas arse... 266 2e-69 ref|YP_004754428.1| putative outer membrane protein W family [Co... 231 8e-59 ref|YP_004153385.1| ompw family protein [Variovorax paradoxus EP... 218 7e-55 ref|ZP_02463437.1| OmpW family protein [Burkholderia thailandens... 208 7e-52 ref|YP_003910568.1| OmpW family protein [Burkholderia sp. CCGE10... 207 1e-51 ref|YP_004687393.1| porin OmpW family [Cupriavidus necator N-1] ... 207 1e-51 ref|YP_728095.1| OmpW family porin [Ralstonia eutropha H16] >gi|... 206 2e-51 ref|YP_002007106.1| hypothetical protein RALTA_A3126 [Cupriavidu... 204 7e-51 >ref|YP_003774104.1| outer membrane W protein [Herbaspirillum seropedicae SmR1] gb|ADJ62196.1| outer membrane W protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 328 bits (840), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 174/251 (69%), Positives = 192/251 (76%), Gaps = 8/251 (3%) Query: 1 MQKQFSFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGP 60 MQKQFSFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHL PQDSS LTK +GP AG Sbjct: 1 MQKQFSFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLQPQDSSSGLTKLNGPQAGF 60 Query: 61 IPGSGSTVKNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSP 120 P S STV NADTLGIAFTHF TDN ++TADLGIPP FKL GTG L +GE+GKAKQWSP Sbjct: 61 FPNSTSTVSNADTLGIAFTHFFTDNFAVTADLGIPPEFKLKGTGDLQALGELGKAKQWSP 120 Query: 121 AIVAKYHFGDANSAFRPFVGAGVTYVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLS 180 AIVAK++FG A AFRPFVGAGVTYVWY +V L+ FQ S + ++A+LS Sbjct: 121 AIVAKWYFGGAQDAFRPFVGAGVTYVWYSDVSLSQAFQNRASLN------SGGTATANLS 174 Query: 181 SSWAPVLTVGGNYNFNKNWSVGLSVSYIPLKTNADITTE-LPALAG-GTTHSSTSLTINP 238 SSWAPVLT G Y FN WS SVSYIPLKT+ADIT A AG G T++T++P Sbjct: 175 SSWAPVLTGGATYAFNDRWSASFSVSYIPLKTDADITANPAGAFAGLGPQRYKTTITLDP 234 Query: 239 IVTFLSVGYKF 249 IVTFLSVGYKF Sbjct: 235 IVTFLSVGYKF 245 >ref|YP_001351718.1| outer membrane protein W [Janthinobacterium sp. Marseille] gb|ABR91506.1| outer membrane protein W [Janthinobacterium sp. Marseille] Length = 242 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 142/251 (56%), Positives = 185/251 (73%), Gaps = 11/251 (4%) Query: 1 MQKQFSFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGP 60 M K FS L K+AA+SV+AA + P AQ+AG NIVN+GWFHL P +SSE L ++ GP Sbjct: 1 MTKPFSVLSKLAAVSVLAAISLPAAAQSAGDNIVNIGWFHLRPNESSEPLYRHMPAPVGP 60 Query: 61 IPGSGSTVKNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSP 120 + GS +T+ NADTLG+A THF TDN +LTADLG+PP FKL G G L+ +G++G+AKQWSP Sbjct: 61 LAGSSATISNADTLGLALTHFFTDNFALTADLGLPPKFKLYGGGTLSQLGQLGEAKQWSP 120 Query: 121 AIVAKYHFGDANSAFRPFVGAGVTYVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLS 180 AI+AK++FGD NS RPFVG GVT VWY +VEL+ + QR ++ G + ++A LS Sbjct: 121 AIIAKWYFGDRNSKLRPFVGLGVTRVWYTSVELSSSLQRQVT-----GGLPGGTATADLS 175 Query: 181 SSWAPVLTVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGT--THSSTSLTINP 238 SSWAPV VG YNF + WS+G SV+YIPLKT+ADIT + G T + ++T+LT++P Sbjct: 176 SSWAPVANVGLTYNFTEKWSLGFSVAYIPLKTDADITGRI----GNTVISRNTTTLTLDP 231 Query: 239 IVTFLSVGYKF 249 +VTFLSVGYKF Sbjct: 232 LVTFLSVGYKF 242 >ref|YP_001098385.1| outer membrane protein W [Herminiimonas arsenicoxydans] emb|CAL60256.1| putative outer membrane protein W precursor [Herminiimonas arsenicoxydans] Length = 249 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 137/248 (55%), Positives = 179/248 (72%), Gaps = 8/248 (3%) Query: 5 FSFLPKIAAL---SVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPI 61 F LP++AA+ S +AAF+ P AQ+AG NIVNVGWFHL DSSE L + P GPI Sbjct: 7 FRVLPQLAAVTAVSALAAFSLPAAAQSAGDNIVNVGWFHLKTYDSSETLIRRS-PAPGPI 65 Query: 62 PGSGSTVKNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPA 121 GS +TV +ADTLG+AFTHF+TDN +LTADLGIPP FKL+G G LA +G+IG A+QWSPA Sbjct: 66 AGSSATVGDADTLGLAFTHFVTDNFALTADLGIPPKFKLDGAGSLASLGQIGTARQWSPA 125 Query: 122 IVAKYHFGDANSAFRPFVGAGVTYVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLSS 181 ++AK++FGD NS RPFVG GVT VWY +V+L+ + Q ++ G T ++A+LSS Sbjct: 126 VIAKWYFGDRNSQIRPFVGLGVTRVWYSDVKLSSSLQAAVTPPAFGGPGT---ATANLSS 182 Query: 182 SWAPVLTVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVT 241 SW+PV +G YN +K WS+G S+SYIPL T+A+I A + +T+LT++P+VT Sbjct: 183 SWSPVANLGLTYNIDKKWSIGFSISYIPLDTDAEIIGR-NAAGNVISRHTTNLTLDPLVT 241 Query: 242 FLSVGYKF 249 FLSVGYKF Sbjct: 242 FLSVGYKF 249 >ref|YP_004754428.1| putative outer membrane protein W family [Collimonas fungivorans Ter331] gb|AEK63605.1| putative outer membrane protein W family [Collimonas fungivorans Ter331] Length = 238 Score = 231 bits (589), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 136/249 (54%), Positives = 175/249 (70%), Gaps = 11/249 (4%) Query: 1 MQKQFSFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGP 60 M+K F+ LPK+AALSV+AA AAP MAQ AG N+VN+GW H+ SSE L G Sbjct: 1 MKKPFNVLPKLAALSVLAACAAPAMAQQAGDNVVNLGWAHIGLNQSSEPLKL----GTIT 56 Query: 61 IPGSGSTVKNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSP 120 +P SG+ V NADT + THF TDN+++TADLGIPP FKL+G G L G+G++G A QWSP Sbjct: 57 VPNSGAHVSNADTAILQMTHFFTDNIAVTADLGIPPKFKLSGEGSLKGLGQLGTATQWSP 116 Query: 121 AIVAKYHFGDANSAFRPFVGAGVTYVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLS 180 AI+AKY+FGDANS FRP+VGAG YVWY N++LT + ++ G A +SA LS Sbjct: 117 AILAKYYFGDANSQFRPYVGAGAAYVWYSNIKLTSSLTGLLA-----GGDAGASTSADLS 171 Query: 181 SSWAPVLTVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIV 240 SS+ PV VG YNF+KNWS S+SY+PL T AD++T G TTH++T +T+NP+V Sbjct: 172 SSFVPVANVGIAYNFDKNWSANFSLSYVPLDTKADLSTHHS--DGTTTHATTKITLNPLV 229 Query: 241 TFLSVGYKF 249 + L+VGYKF Sbjct: 230 SVLTVGYKF 238 >ref|YP_004153385.1| ompw family protein [Variovorax paradoxus EPS] gb|ADU35274.1| OmpW family protein [Variovorax paradoxus EPS] Length = 241 Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 112/229 (48%), Positives = 150/229 (65%), Gaps = 11/229 (4%) Query: 25 MAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPIPGSGSTVKNADTLGIAFTHFLTD 84 AQ AG + GWFHLAPQDSS+ L + P +PGSG++VK++DTLG++ +F+ Sbjct: 20 FAQNAGDWVAGAGWFHLAPQDSSKPL-QVTAPVQSVLPGSGASVKDSDTLGLSLAYFIDS 78 Query: 85 NVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAKYHFGDANSAFRPFVGAGVT 144 + ++ LGIPP FKL G G LA VGE+G+A+QWSP ++ KY+F + N AFRPFVG G T Sbjct: 79 HWAVEGVLGIPPKFKLEGQGTLARVGELGEARQWSPTVLVKYNFNEGNDAFRPFVGLGAT 138 Query: 145 YVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLSSSWAPVLTVGGNYNFNKNWSVGLS 204 YVWY +V+LT N Q ++S++ S ++A L SS+APVL G +Y +K+W + S Sbjct: 139 YVWYSDVKLTSNLQGALASQFRQSPY-SVNTTAKLDSSFAPVLNAGVSYQLDKHWGIAFS 197 Query: 205 VSYIPLKTNADITTE----LPALAGGTTHSSTSLTINPIVTFLSVGYKF 249 VSYIPLKT A +TT LP S SL +NPIVTFLS Y+F Sbjct: 198 VSYIPLKTKAKLTTTSITGLPVAC-----SEASLKLNPIVTFLSATYRF 241 >ref|ZP_02463437.1| OmpW family protein [Burkholderia thailandensis MSMB43] Length = 241 Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 104/225 (46%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 26 AQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPIPGSGSTVKNADTLGIAFTHFLTDN 85 AQ+AG+ +VN GW HLAPQDSS+ LT N + IPGSG++V +ADT+ ++ +F+TD+ Sbjct: 20 AQSAGNWVVNAGWMHLAPQDSSDPLTVNALGTSATIPGSGASVSDADTVALSARYFVTDH 79 Query: 86 VSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAKYHFGDANSAFRPFVGAGVTY 145 +++ LG+PP +L+GTG L+ +GE+G A+ W P+++A+YHFG++ + RP+VG G++Y Sbjct: 80 IAVETLLGVPPKLRLSGTGSLSTLGELGSARVWGPSLLAQYHFGESQARLRPYVGVGISY 139 Query: 146 VWYDNVELTDNFQR-TISSKYTNGAVTSAKSSASLSSSWAPVLTVGGNYNFNKNWSVGLS 204 VW+ NVEL+ + T G +SASL SS+APV+ G YN +K+WSVG+S Sbjct: 140 VWFKNVELSSPIATGQFLASPTTGTALEGPTSASLKSSFAPVVNAGLTYNIDKHWSVGVS 199 Query: 205 VSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSVGYKF 249 VSY L T A +TT A G+ +S + INP+V+F+SVGY+F Sbjct: 200 VSYAWLSTTATLTTH---SALGSVSTSAKVKINPLVSFVSVGYRF 241 >ref|YP_003910568.1| OmpW family protein [Burkholderia sp. CCGE1003] gb|ADN61277.1| OmpW family protein [Burkholderia sp. CCGE1003] Length = 242 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/227 (48%), Positives = 151/227 (66%), Gaps = 8/227 (3%) Query: 26 AQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPIPGSGSTVKNADTLGIAFTHFLTDN 85 AQ+AG ++N GWFHL PQDSS+ LT N + G+G+TV ++DT G+ T+FLTD+ Sbjct: 21 AQSAGDFMLNAGWFHLGPQDSSKPLTVNALGTSVTKAGTGATVDDSDTFGLTVTYFLTDH 80 Query: 86 VSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAKYHFGDANSAFRPFVGAGVTY 145 ++ TA LGIPP F L GTG LA +G+IG A +WSP ++ KY+F DA S FRP++GAG +Y Sbjct: 81 IATTAVLGIPPKFNLTGTGSLAALGQIGSAYEWSPTLLMKYYFNDAQSRFRPYLGAGASY 140 Query: 146 VWYDNVELTDNFQR---TISSKYTNGAVTSAKSSASLSSSWAPVLTVGGNYNFNKNWSVG 202 VWY V+L+ SS Y G ++A L SS+APV+ G +YN +K+WSV Sbjct: 141 VWYSGVKLSSAVSSGSFLYSSTY--GTALQGTTTARLGSSFAPVINAGFSYNIDKHWSVD 198 Query: 203 LSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSVGYKF 249 LS+SY+ L T A +TT+ GT S+T L +NPI++F SVGY+F Sbjct: 199 LSLSYMWLSTRATLTTKSSV---GTVTSTTKLKLNPIISFASVGYRF 242 >ref|YP_004687393.1| porin OmpW family [Cupriavidus necator N-1] gb|AEI78912.1| porin OmpW family [Cupriavidus necator N-1] Length = 240 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/249 (44%), Positives = 158/249 (63%), Gaps = 13/249 (5%) Query: 4 QFSFLPKIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTK---NDGPGAGP 60 +F++ +AA +VMA A AQ+AGSNIV++GWF + P S++ LT N P Sbjct: 2 KFTYKKMLAAGAVMA-LAGAAHAQSAGSNIVSLGWFRVMPNSSADPLTVDSINGRPVGMT 60 Query: 61 IPGSGSTVKNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSP 120 P +G+ +++ADTLG+AF+H+ TDN+S GIPP + GTG A G++G KQWSP Sbjct: 61 RPNTGAEIESADTLGLAFSHYFTDNISGEIIAGIPPKHDVKGTGNYAQYGKLGSVKQWSP 120 Query: 121 AIVAKYHFGDANSAFRPFVGAGVTYVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLS 180 A++ KYHF DA + FRP+VG GV Y W+ + +++ Q ++ ++ G A+ +AS Sbjct: 121 AVLVKYHFFDAKTKFRPYVGIGVNYTWFTDETISN--QNFVNREFAPG----ARMTASAK 174 Query: 181 SSWAPVLTVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIV 240 +SW PV +G NY N NW VGLSVSY+PL T A TT+ + T S T + I+P+V Sbjct: 175 ASWNPVFNIGANYAINDNWFVGLSVSYVPLSTRASFTTQAGPV---TIQSHTKIKIDPVV 231 Query: 241 TFLSVGYKF 249 TFL+VGY+F Sbjct: 232 TFLNVGYRF 240 >ref|YP_728095.1| OmpW family porin [Ralstonia eutropha H16] emb|CAJ94727.1| Porin, OmpW family [Ralstonia eutropha H16] Length = 240 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 110/243 (45%), Positives = 151/243 (62%), Gaps = 12/243 (4%) Query: 10 KIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTK---NDGPGAGPIPGSGS 66 K+ A + A A AQ+AGSNIV++GWF + P S++ LT N P P +G+ Sbjct: 7 KMLAAGAVMALAGAAHAQSAGSNIVSLGWFRVMPNSSADPLTVDSINGRPVGMTRPNTGA 66 Query: 67 TVKNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAKY 126 +++ADTLG+AFTHF TDN+S GIPP + GTG A G++G KQWSPA++ KY Sbjct: 67 EIESADTLGLAFTHFFTDNISGEIVAGIPPKHDVKGTGNYAQYGKLGSVKQWSPALLVKY 126 Query: 127 HFGDANSAFRPFVGAGVTYVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLSSSWAPV 186 HF DA + FRP+VG GV Y W+ + +T+ Q ++ ++ G A+ +AS SW PV Sbjct: 127 HFFDAKTRFRPYVGIGVNYTWFTDETITN--QNFVNREFLPG----ARMTASAKPSWNPV 180 Query: 187 LTVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSVG 246 +G NY N NW VGLSVSY+PL T A TT+ + T S T + I+P+VTFL+VG Sbjct: 181 FNIGANYAINDNWFVGLSVSYVPLSTRASFTTQAGPV---TIQSHTKIKIDPVVTFLNVG 237 Query: 247 YKF 249 Y+F Sbjct: 238 YRF 240 >ref|YP_002007106.1| hypothetical protein RALTA_A3126 [Cupriavidus taiwanensis LMG 19424] emb|CAQ71045.1| putative Outer membrane protein, OmpW family [Cupriavidus taiwanensis LMG 19424] Length = 240 Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 109/244 (44%), Positives = 152/244 (62%), Gaps = 14/244 (5%) Query: 10 KIAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPI----PGSG 65 K+ A + A AQ+AGSNIV++GWF + P S++ LT D G P+ P +G Sbjct: 7 KMLAAGAVMALTGAAHAQSAGSNIVSMGWFRVMPNSSADPLTV-DSIGGRPVGMTRPNTG 65 Query: 66 STVKNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAK 125 + +++ADTLG+AFTHF TDN+S GIPP + GTG A G++G KQWSPA+V K Sbjct: 66 AEIESADTLGLAFTHFFTDNISGEIVAGIPPKHDVKGTGNYAQYGKLGSVKQWSPALVVK 125 Query: 126 YHFGDANSAFRPFVGAGVTYVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLSSSWAP 185 YHF DA + FRP+VG GV Y W+ + +T+ Q ++ ++ G A+ +AS SW P Sbjct: 126 YHFFDAKTRFRPYVGIGVNYTWFTDETITN--QNFVNREFAPG----ARMTASAKPSWNP 179 Query: 186 VLTVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSV 245 V +G NY N +W VGLSVSY+PL T A TT+ + T S T + I+P+VT+L+V Sbjct: 180 VFNIGANYAINDHWFVGLSVSYVPLSTRASFTTQAGPV---TIQSHTKIKIDPVVTYLNV 236 Query: 246 GYKF 249 GY+F Sbjct: 237 GYRF 240