BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0187.p (106 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774096.1| transmembrane protein [Herbaspirillum serope... 189 1e-46 ref|ZP_08276158.1| putative transmembrane protein [Oxalobacterac... 100 5e-20 ref|YP_002980454.1| branched-chain amino acid transport [Ralston... 92 2e-17 ref|ZP_07675378.1| AzlD family protein [Ralstonia sp. 5_7_47FAA]... 92 2e-17 ref|YP_001898076.1| branched-chain amino acid transport [Ralston... 92 3e-17 gb|AEG70086.1| conserved hypothetical protein [Ralstonia solanac... 87 9e-16 ref|YP_003746671.1| hypothetical protein RCFBP_20905 [Ralstonia ... 86 2e-15 ref|YP_002258817.1| hypothetical protein RSIPO_00613 [Ralstonia ... 85 3e-15 ref|ZP_00943134.1| Hypothetical Protein RRSL_04108 [Ralstonia so... 83 2e-14 ref|YP_003753409.1| hypothetical protein RPSI07_2784 [Ralstonia ... 75 4e-12 >ref|YP_003774096.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62188.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 107 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/107 (97%), Positives = 104/107 (97%), Gaps = 1/107 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAAMAA-IIFPDLVTA 59 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAA A IIFPDLVTA Sbjct: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAAAMAAIIFPDLVTA 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLRWML 106 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLRWML Sbjct: 61 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLRWML 107 >ref|ZP_08276158.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF30370.1| putative transmembrane protein [Oxalobacteraceae bacterium IMCC9480] Length = 107 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/104 (56%), Positives = 74/104 (71%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAAMAAIIF-PDLVTA 59 M+ IW I L+ L+T++TR FFL GHAVKLP +++HAL YAPAA A I PDLV Sbjct: 1 MTTTEIWITIGLLMLATVLTRCSFFLLGHAVKLPEKVQHALRYAPAAAMAAIVAPDLVLV 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 G ++L NP+LLAG+G FF AT+HLLGTI+ GM L+TVLR Sbjct: 61 GGTLDLHWTNPRLLAGLGAVAFFLATKHLLGTIIIGMALYTVLR 104 >ref|YP_002980454.1| branched-chain amino acid transport [Ralstonia pickettii 12D] gb|ACS61782.1| branched-chain amino acid transport [Ralstonia pickettii 12D] Length = 107 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/104 (48%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAA-MAAIIFPDLVTA 59 MS IW I MT+ T++TRS F + G + LP R++HAL +APAA + AI+ PDL+ Sbjct: 1 MSALQIWLVIAGMTVVTIVTRSLFLIVGDRMTLPTRVQHALRFAPAAALVAIVLPDLLWN 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 +G + S NP+L+AGI F+ ATR +LG I GM +FTVLR Sbjct: 61 QGHFDASWTNPRLMAGIAATAFYVATRRMLGMIFVGMGVFTVLR 104 >ref|ZP_07675378.1| AzlD family protein [Ralstonia sp. 5_7_47FAA] gb|EFP66214.1| AzlD family protein [Ralstonia sp. 5_7_47FAA] Length = 107 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/104 (48%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAA-MAAIIFPDLVTA 59 MS IW I MT+ T++TRS F + G + LP R++HAL +APAA + AI+ PDL+ Sbjct: 1 MSALEIWLVIAGMTVVTIVTRSLFLIVGDRMTLPTRVQHALRFAPAAALVAIVLPDLLWN 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 +G + S NP+L+AGI F+ ATR +LG I GM +FTVLR Sbjct: 61 QGHFDASWTNPRLMAGIAATAFYVATRRMLGMIFVGMGVFTVLR 104 >ref|YP_001898076.1| branched-chain amino acid transport [Ralstonia pickettii 12J] gb|ACD25644.1| branched-chain amino acid transport [Ralstonia pickettii 12J] Length = 107 Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/104 (48%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAA-MAAIIFPDLVTA 59 MS IW I MT+ T++TRS F + G+ + LP R++HAL +APAA + AI+ PDL+ Sbjct: 1 MSALEIWLVIAGMTVVTIVTRSLFLIVGNRMTLPTRVQHALRFAPAAALVAIVLPDLLWN 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 G + S NP+L+AGI F+ ATR +LG I GM +FTVLR Sbjct: 61 HGHFDASWTNPRLMAGIAATAFYVATRRMLGMIFVGMGVFTVLR 104 >gb|AEG70086.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 107 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAA-MAAIIFPDLVTA 59 MS IW I MTL T++TR+ F + G + LP R +HAL +APAA + AI+ PDL+ Sbjct: 1 MSTLAIWLTIFGMTLVTVVTRALFLMVGDRITLPMRAQHALRFAPAAALVAIVLPDLLWY 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 G + S NP+L+AG+ F+ ATR +L I+ GM ++TVLR Sbjct: 61 HGGFDASWTNPRLMAGVAATAFYVATRRMLSMILVGMAVYTVLR 104 >ref|YP_003746671.1| hypothetical protein RCFBP_20905 [Ralstonia solanacearum CFBP2957] emb|CAQ56885.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] emb|CBJ44085.1| conserved membrane protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 107 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAA-MAAIIFPDLVTA 59 MS IW I MTL T++TR+ F + G + LP R +HAL +APAA + AI+ PDL+ Sbjct: 1 MSTLEIWLTIFGMTLVTVVTRALFLMVGDRITLPMRAQHALRFAPAAALVAIVLPDLLWY 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 G + S NP+L+AG+ F+ ATR +L I+ GM ++TVLR Sbjct: 61 HGGFDASWTNPRLMAGVVATAFYVATRRMLSMILVGMAVYTVLR 104 >ref|YP_002258817.1| hypothetical protein RSIPO_00613 [Ralstonia solanacearum IPO1609] emb|CAQ60742.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 107 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAA-MAAIIFPDLVTA 59 MS IW I MTL T++TR+ F + G + LP R +HAL +APAA + AI+ PDL+ Sbjct: 1 MSTLEIWLTIFGMTLVTVVTRALFLMVGDRLTLPLRAQHALRFAPAAALVAIVLPDLLWY 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 G + S NP+L+AG+ F+ ATR +L I+ GM ++TVLR Sbjct: 61 HGGFDASWTNPRLMAGVVATAFYVATRRMLSMILVGMAVYTVLR 104 >ref|ZP_00943134.1| Hypothetical Protein RRSL_04108 [Ralstonia solanacearum UW551] gb|EAP74385.1| Hypothetical Protein RRSL_04108 [Ralstonia solanacearum UW551] Length = 124 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAA-MAAIIFPDLVTA 59 +S IW I MTL T++TR+ F + G + LP R +HAL +APAA + AI+ PDL+ Sbjct: 18 VSTLEIWLTIFGMTLVTVVTRALFLMVGDRLTLPLRAQHALRFAPAAALVAIVLPDLLWY 77 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 G + S NP+L+AG+ F+ ATR +L I+ GM ++TVLR Sbjct: 78 HGGFDASWTNPRLMAGVVATAFYVATRRMLSMILVGMAVYTVLR 121 >ref|YP_003753409.1| hypothetical protein RPSI07_2784 [Ralstonia solanacearum PSI07] emb|CBJ52149.1| conserved membrane protein of unknown function [Ralstonia solanacearum PSI07] emb|CCA80092.1| conserved membrane hypothetical protein [blood disease bacterium R229] Length = 107 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/104 (47%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 1 MSDWYIWSAIVLMTLSTLITRSGFFLFGHAVKLPPRLKHALGYAPAAMAA-IIFPDLVTA 59 MS IW I MT+ T++TR+ F + G + LP R++HAL +APAA A I+ PDL+ Sbjct: 1 MSTLEIWLTIFGMTIVTIVTRALFLMVGDRLTLPMRVRHALRFAPAAALAAIVLPDLLWY 60 Query: 60 RGVIELSLANPKLLAGIGGAIFFAATRHLLGTIVAGMTLFTVLR 103 G + S NP+L+AGI A F+ ATR +LG I+ GM ++TVLR Sbjct: 61 HGGFDASWTNPRLMAGIAAAAFYVATRRMLGMILVGMGVYTVLR 104