BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0147.p (238 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774058.1| DnaA regulatory inactivator Hda protein [Her... 481 e-134 ref|ZP_08276060.1| putative regulatory factor [Oxalobacteraceae ... 252 3e-65 ref|YP_004754488.1| chromosomal replication initiator protein dn... 246 1e-63 ref|YP_001354562.1| hypothetical protein mma_2872 [Janthinobacte... 241 7e-62 ref|YP_001100878.1| putative regulator protein [Herminiimonas ar... 239 2e-61 ref|ZP_04579513.1| conserved hypothetical protein [Oxalobacter f... 226 2e-57 ref|ZP_04577361.1| DnaA regulatory inactivator Hda [Oxalobacter ... 217 1e-54 ref|ZP_06844596.1| DnaA regulatory inactivator Hda [Burkholderia... 205 6e-51 ref|YP_557098.1| hypothetical protein Bxe_A3953 [Burkholderia xe... 204 7e-51 ref|YP_001894394.1| DnaA regulatory inactivator Hda [Burkholderi... 204 1e-50 >ref|YP_003774058.1| DnaA regulatory inactivator Hda protein [Herbaspirillum seropedicae SmR1] gb|ADJ62150.1| DnaA regulatory inactivator Hda protein [Herbaspirillum seropedicae SmR1] Length = 238 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 238/238 (100%), Positives = 238/238 (100%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA Sbjct: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 Query: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF Sbjct: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 Query: 121 NLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLD 180 NLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLD Sbjct: 121 NLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLD 180 Query: 181 RGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQESGEQ 238 RGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQESGEQ Sbjct: 181 RGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQESGEQ 238 >ref|ZP_08276060.1| putative regulatory factor [Oxalobacteraceae bacterium IMCC9480] gb|EGF30464.1| putative regulatory factor [Oxalobacteraceae bacterium IMCC9480] Length = 227 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/235 (58%), Positives = 164/235 (69%), Gaps = 12/235 (5%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 M+Q+ LDL ++PQ+ D+F GRN ELL L A D+ + RF+Y W EA Sbjct: 1 MRQMLLDLPGEKPQNLDNFEPGRNTELLALLSQHAYG--DKLPLSA-----RFVYCWGEA 53 Query: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 GAGK+HLL AL T + RLI DSP AAF +SP I YLLDD D+L +E QIAAF Sbjct: 54 GAGKSHLLHALNTTAS-----TRLIGPDSPAAAFIHSPDIGLYLLDDCDRLSDELQIAAF 108 Query: 121 NLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLD 180 LFNQIRE GG ++ SG LPP RL+LREDLRTRLGWGLIY+VH L+DDEKIAAL Sbjct: 109 GLFNQIREYGGALISSGALPPARLDLREDLRTRLGWGLIYEVHGLTDDEKIAALTLAART 168 Query: 181 RGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 235 RG + V+ Y++TH+RRDM SLS MLD LD+YSL TKR +TLPLLRELLQ+ES Sbjct: 169 RGFALATGVLPYLITHFRRDMRSLSAMLDELDQYSLETKRPVTLPLLRELLQRES 223 >ref|YP_004754488.1| chromosomal replication initiator protein dnaA [Collimonas fungivorans Ter331] gb|AEK63665.1| Chromosomal replication initiator protein dnaA [Collimonas fungivorans Ter331] Length = 233 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 125/224 (55%), Positives = 162/224 (72%), Gaps = 10/224 (4%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 M+Q+ LD++AD+PQ+ +FV G+N E L+ L+ L V S ++ +A DRF+YLW +A Sbjct: 1 MRQLTLDITADEPQTLATFVVGQNQEALQFLQRL----VAPSAKSLTAPGDRFVYLWGQA 56 Query: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDA-AFDYSPQITHYLLDDVDQLFEEQQIAA 119 GAGK+H+LQALA+ + ARLI + DA AF +SP + YL+D+ D+L + QI A Sbjct: 57 GAGKSHVLQALASSTS-----ARLIHGPNDDAEAFQFSPDVAGYLIDNCDKLSADDQIEA 111 Query: 120 FNLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITL 179 FNLFNQIRE GGW+V SG LPP+ L +REDLRTRLGWGLIYQ+H LSD+EKIAAL Sbjct: 112 FNLFNQIREHGGWLVTSGELPPSELSVREDLRTRLGWGLIYQLHGLSDEEKIAALTHAAQ 171 Query: 180 DRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAIT 223 RGL + V+ Y++TH+RRDM SLS MLD LDRYSL T+R IT Sbjct: 172 ARGLHLSSGVLPYLITHFRRDMRSLSAMLDELDRYSLETQRPIT 215 >ref|YP_001354562.1| hypothetical protein mma_2872 [Janthinobacterium sp. Marseille] gb|ABR90051.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 223 Score = 241 bits (615), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 162/237 (68%), Gaps = 18/237 (7%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATA---GVDQSTQTGSASTDRFLYLW 57 M+Q+ LDL A++PQ+ DSFV G NAEL + L+ LA G+D+ RF+YLW Sbjct: 1 MRQLLLDLPAEKPQTLDSFVVGTNAELAQLLQRLAAGQPNGLDE----------RFVYLW 50 Query: 58 AEAGAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQI 117 EAGAGKTHLL+A+A E AR + +D+ F Y T YLLDD +L + QI Sbjct: 51 GEAGAGKTHLLRAMA-----ETPHARYLDSDAGTDDFLYDSATTLYLLDDSHKLTPDAQI 105 Query: 118 AAFNLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQI 177 AAF LFNQ+REQGG ++ +G P L +REDLRTR GWGLIYQVH LSDDEKIAAL Sbjct: 106 AAFALFNQVREQGGCLLAAGNAAPASLTVREDLRTRFGWGLIYQVHGLSDDEKIAALTHA 165 Query: 178 TLDRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQE 234 RGL + P V+ Y++TH+ RDM SLS MLDALD+YSL TKR ITLPLLRELLQ++ Sbjct: 166 AGARGLTLSPGVLPYLITHFARDMRSLSAMLDALDQYSLETKRPITLPLLRELLQRQ 222 >ref|YP_001100878.1| putative regulator protein [Herminiimonas arsenicoxydans] emb|CAL62757.1| Conserved hypothetical protein, putative DNA replication initiation-like ATPase [Herminiimonas arsenicoxydans] Length = 227 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 132/238 (55%), Positives = 159/238 (66%), Gaps = 18/238 (7%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLA---TAGVDQSTQTGSASTDRFLYLW 57 M+Q+ LDL A++PQ+ SFV G NAEL+ L+ LA G+D+ RF+YLW Sbjct: 1 MRQLLLDLPAEKPQTLTSFVVGANAELIHLLQRLAQGQPGGLDE----------RFVYLW 50 Query: 58 AEAGAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQI 117 AGAGKTHLL+ALA+ I D+ AF Y P T YLLDD +L E QI Sbjct: 51 GGAGAGKTHLLRALAS-----ADTTLYIPGDAGADAFAYQPATTLYLLDDSHKLSPEAQI 105 Query: 118 AAFNLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQI 177 AAF LFNQ+REQGG ++ +G P L +REDLRTR GWGLIYQVH LSD+EKIAAL Sbjct: 106 AAFALFNQVREQGGCLLAAGNAAPATLTVREDLRTRFGWGLIYQVHGLSDEEKIAALTHA 165 Query: 178 TLDRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 235 RGL + P V+ Y+L+H+ RDM SLS MLDALD YSL TKR ITLPLLRELLQ+E+ Sbjct: 166 AEARGLMLSPGVLPYLLSHFARDMRSLSAMLDALDEYSLETKRPITLPLLRELLQREN 223 >ref|ZP_04579513.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gb|EEO30486.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 224 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/234 (49%), Positives = 158/234 (67%), Gaps = 15/234 (6%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 M+Q+ L+L S D+++TG+N E++ L+ +A S + F+YLW + Sbjct: 1 MQQLLLNLDTGNAPSLDTYLTGQNGEVVHLLREIAY----------RTSREHFVYLWGDN 50 Query: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 GKTHLL+AL+ + AR I +D+P+ F YSPQ YLLDD ++L ++QIAAF Sbjct: 51 ATGKTHLLKALS-----QFSPARYIPSDAPETDFSYSPQCNLYLLDDCERLDSQKQIAAF 105 Query: 121 NLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITLD 180 NLFNQ+RE G+M+ SG P L+LR+DL++RL WGL+YQ+ LSD+EK+AAL + Sbjct: 106 NLFNQVRENNGYMITSGPCTPLALDLRDDLKSRLCWGLVYQIKSLSDEEKMAALNEQARQ 165 Query: 181 RGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQE 234 RG I P V+ Y++THY+RDM SLS +LDALDRYSL TKR ITLPLL +LLQQ+ Sbjct: 166 RGFTISPGVLPYLITHYQRDMHSLSMILDALDRYSLQTKRTITLPLLHDLLQQK 219 >ref|ZP_04577361.1| DnaA regulatory inactivator Hda [Oxalobacter formigenes HOxBLS] gb|EEO28323.1| DnaA regulatory inactivator Hda [Oxalobacter formigenes HOxBLS] Length = 225 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 157/235 (66%), Gaps = 16/235 (6%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 M+Q+ L+L P + ++FV G+N E L L L+A S DRF+YLW +A Sbjct: 1 MQQLLLNLDTASPPALETFVPGQNEEALHLLHLIA----------ARQSRDRFVYLWGDA 50 Query: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 GKTHLL A+A R A +R + A SP AAFDY I+ YL+DD D+L E+QIAAF Sbjct: 51 AVGKTHLLLAMA-RFAP----SRYLSARSPLAAFDYDSGISLYLIDDCDKLSPEKQIAAF 105 Query: 121 NLFNQIREQG-GWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITL 179 +LFNQ+RE G M+ +G+ P L LR+DL++RL WGL+YQ+ L+D+EKIAAL + Sbjct: 106 DLFNQVRENGRACMITAGSSTPLALTLRDDLKSRLCWGLVYQIKGLTDEEKIAALTEQAK 165 Query: 180 DRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQE 234 RG + P V+ Y++THY+RDM SLS +LDALDRYSL TKR ITLPLL +LL ++ Sbjct: 166 SRGFTLSPGVLPYLITHYQRDMHSLSMILDALDRYSLQTKRTITLPLLYDLLHKK 220 >ref|ZP_06844596.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1] gb|EFG67774.1| DnaA regulatory inactivator Hda [Burkholderia sp. Ch1-1] Length = 256 Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 110/239 (46%), Positives = 148/239 (61%), Gaps = 9/239 (3%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 ++Q+ LDL P +FD+F G NAEL+ RL+ L D + G + DR Y+W E+ Sbjct: 2 LRQLTLDLGTPPPSTFDNFFAGANAELVTRLREL-----DNALAAGPVA-DRTFYIWGES 55 Query: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 G+G+THLLQAL A G AR S AAF + P++ Y +DD D L QQIA F Sbjct: 56 GSGRTHLLQALVHE-APPG-HARFAGPQSSLAAFSFDPRVALYAIDDCDALSAAQQIAVF 113 Query: 121 NLFNQIREQ-GGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITL 179 NLFN++R +V +G PP + +REDLRTRLGWGL++ + L D++K A L Sbjct: 114 NLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLTPLPDEDKAAVLKHAAR 173 Query: 180 DRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQESGEQ 238 +RG+ + V Y+LTH+RRDMPSL +LDALDR+SL KRA+TLPLLR +L E+ Sbjct: 174 ERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232 >ref|YP_557098.1| hypothetical protein Bxe_A3953 [Burkholderia xenovorans LB400] gb|ABE29046.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 256 Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 110/239 (46%), Positives = 148/239 (61%), Gaps = 9/239 (3%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 ++Q+ LDL P +FD+F G NAEL+ RL+ L D + G + DR Y+W E+ Sbjct: 2 LRQLTLDLGTPPPSTFDNFFAGANAELVTRLREL-----DNALAAGPVA-DRTFYIWGES 55 Query: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 G+G+THLLQAL A G AR S AAF + P++ Y +DD D L QQIA F Sbjct: 56 GSGRTHLLQAL-VHEAPPG-HARFAGPQSSLAAFGFDPRVALYAIDDCDALSAAQQIAVF 113 Query: 121 NLFNQIREQG-GWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITL 179 NLFN++R +V +G PP + +REDLRTRLGWGL++ + L D++K A L Sbjct: 114 NLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEDKAAVLKHAAR 173 Query: 180 DRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQESGEQ 238 +RG+ + V Y+LTH+RRDMPSL +LDALDR+SL KRA+TLPLLR +L E+ Sbjct: 174 ERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232 >ref|YP_001894394.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN] gb|ACD15170.1| DnaA regulatory inactivator Hda [Burkholderia phytofirmans PsJN] Length = 256 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 107/239 (44%), Positives = 144/239 (60%), Gaps = 9/239 (3%) Query: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 ++Q+ LDL P +FD+F G NAEL+ RL+ L ++ DR YLW E+ Sbjct: 2 LRQLTLDLGTPPPSTFDNFFAGANAELVTRLREL------ENALAAGPVADRTFYLWGES 55 Query: 61 GAGKTHLLQALATRVAQEGRQARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAAF 120 G+G+THLLQAL + AR S AAF + P++ Y +DD D L QQIA F Sbjct: 56 GSGRTHLLQALVHEASPG--HARFAGPQSSLAAFSFDPRVALYAIDDCDALSAAQQIAVF 113 Query: 121 NLFNQIREQ-GGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITL 179 NLFN++R +V +G PP + +REDLRTRLGWGL++ + L D+ K A L Sbjct: 114 NLFNEVRAHPTSALVAAGNAPPIGMTVREDLRTRLGWGLVFHLAPLPDEGKAAVLKHAAR 173 Query: 180 DRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQESGEQ 238 +RG+ + V Y+LTH+RRDMPSL +LDALDR+SL KRA+TLPLLR +L E+ Sbjct: 174 ERGIMLADDVPAYLLTHFRRDMPSLMALLDALDRFSLEQKRAVTLPLLRTMLASPDAEE 232