BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0141.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774051.1| positive regulator of CheA protein activity ... 374 e-102 ref|YP_003524207.1| CheW protein [Sideroxydans lithotrophicus ES... 187 6e-46 ref|YP_004041027.1| chew protein [Methylovorus sp. MP688] >gi|31... 182 2e-44 ref|YP_003052471.1| CheW protein [Methylovorus glucosetrophus SI... 182 3e-44 ref|YP_003847741.1| CheW protein [Gallionella capsiferriformans ... 181 4e-44 ref|YP_003052474.1| CheW protein [Methylovorus glucosetrophus SI... 181 7e-44 ref|YP_004041024.1| chew protein [Methylovorus sp. MP688] >gi|31... 181 7e-44 ref|YP_522182.1| CheW protein [Rhodoferax ferrireducens T118] >g... 179 1e-43 ref|ZP_08780704.1| CheW protein [Methylobacter tundripaludum SV9... 179 2e-43 ref|YP_001983400.1| chemotaxis protein [Cellvibrio japonicus Ued... 178 3e-43 >ref|YP_003774051.1| positive regulator of CheA protein activity protein [Herbaspirillum seropedicae SmR1] gb|ADJ62143.1| positive regulator of CheA protein activity protein [Herbaspirillum seropedicae SmR1] Length = 194 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/194 (99%), Positives = 193/194 (99%) Query: 1 MPSVSLNGESKRRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAF 60 MPSVSLNGESKRRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAF Sbjct: 1 MPSVSLNGESKRRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAF 60 Query: 61 LRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLS 120 LRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLS Sbjct: 61 LRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLS 120 Query: 121 IGVDQIEPRPSFGAGIRADFVDGMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGG 180 IGVDQIEPRPSFGAGIRADFVD MINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGG Sbjct: 121 IGVDQIEPRPSFGAGIRADFVDAMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGG 180 Query: 181 GPEAIGSISGAAQE 194 GPEAIGSISGAAQE Sbjct: 181 GPEAIGSISGAAQE 194 >ref|YP_003524207.1| CheW protein [Sideroxydans lithotrophicus ES-1] gb|ADE11820.1| CheW protein [Sideroxydans lithotrophicus ES-1] Length = 179 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 93/162 (57%), Positives = 125/162 (77%) Query: 17 EEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVID 76 E+V +QFLTF +G+E FA+ S++EIIE+ LTEVP+MP F+RGVINLRG+VVPV+D Sbjct: 14 EQVAAVQQFLTFTLGSEMFAVGTLSVKEIIEYGQLTEVPMMPGFIRGVINLRGAVVPVLD 73 Query: 77 LSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGI 136 LSVRFGR T V +RTCI+I+E+ +++ +GV+VDAVS VL I +IEP P+FGA I Sbjct: 74 LSVRFGRGATQVTRRTCIVIIEVPTGDEKHDIGVLVDAVSEVLEIPASEIEPPPAFGAKI 133 Query: 137 RADFVDGMINVNERFLVVLDVPRVLSVDELASLLGMSAEDAL 178 R DF+ GM V+ RF+++LDV +VLSVDE+ASL +S + AL Sbjct: 134 RTDFIQGMGKVDGRFVILLDVGKVLSVDEIASLAAVSTQGAL 175 >ref|YP_004041027.1| chew protein [Methylovorus sp. MP688] gb|ADQ85791.1| CheW protein [Methylovorus sp. MP688] Length = 175 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 83/150 (55%), Positives = 121/150 (80%) Query: 21 ESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVR 80 + +Q+LTF++G E FA+ I SI+EIIE+ LT VP MP+F+RGVINLRG+VVPVIDL+ R Sbjct: 24 DQQQYLTFMLGAEIFAINILSIKEIIEYGNLTIVPKMPSFIRGVINLRGAVVPVIDLAAR 83 Query: 81 FGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADF 140 F R +++++CI+I+E++ ++ Q ++GV+VDAV+ VL I DQIEP PSFGA IR DF Sbjct: 84 FARGEAAISRKSCIVIIEVEHEDVQQVIGVLVDAVNEVLEIASDQIEPVPSFGAKIRTDF 143 Query: 141 VDGMINVNERFLVVLDVPRVLSVDELASLL 170 +DGM V+++F+++L+V +VLSVDE+A L+ Sbjct: 144 IDGMGKVDQKFVIILNVNQVLSVDEMAELV 173 >ref|YP_003052471.1| CheW protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51944.1| CheW protein [Methylovorus glucosetrophus SIP3-4] Length = 177 Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 85/150 (56%), Positives = 121/150 (80%) Query: 21 ESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVR 80 + +Q+LTF++G E FA+ I SI+EIIE+ LT VP MP+F+RGVINLRGSVVPVIDL+ R Sbjct: 26 DDQQYLTFMLGAEIFAINILSIKEIIEYGNLTIVPKMPSFIRGVINLRGSVVPVIDLAAR 85 Query: 81 FGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADF 140 F + ++++TCI+I+E++ +E Q ++GVMVDAV+ VL I DQIEP PSFGA IR DF Sbjct: 86 FEKGEAKLSRKTCIVIIEVEHEEVQQVIGVMVDAVNEVLEIASDQIEPVPSFGAKIRTDF 145 Query: 141 VDGMINVNERFLVVLDVPRVLSVDELASLL 170 ++GM V+++F+++L+V +VLSVDE+A L+ Sbjct: 146 INGMGKVDQKFVIILNVNQVLSVDEMAELV 175 >ref|YP_003847741.1| CheW protein [Gallionella capsiferriformans ES-2] gb|ADL55977.1| CheW protein [Gallionella capsiferriformans ES-2] Length = 182 Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/165 (56%), Positives = 125/165 (75%), Gaps = 5/165 (3%) Query: 20 VESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSV 79 V+ Q+LTFL+ E FA+ I +I+EIIE+ LTEVP+MP F+RGVINLRGSVVPV+DL+V Sbjct: 19 VDDHQYLTFLLSGEMFAIAILNIKEIIEYGSLTEVPMMPGFIRGVINLRGSVVPVVDLAV 78 Query: 80 RFGRAPTVVAKRTCIIIMELQ-QDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRA 138 RFGR+ T V++RTCI+I+E++ DE +GVMVD+VS VL I +IEP P+FGA IR Sbjct: 79 RFGRSKTEVSRRTCIVIIEVEGSDETHQDIGVMVDSVSEVLEIPTAEIEPAPAFGAKIRV 138 Query: 139 DFVDGMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGGGPE 183 DF+ GM V +F+++L+ +VLSVDEL S+LG +A GG PE Sbjct: 139 DFIKGMGKVAGKFVIILNADKVLSVDEL-SMLGQAAA---GGVPE 179 >ref|YP_003052474.1| CheW protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51947.1| CheW protein [Methylovorus glucosetrophus SIP3-4] Length = 175 Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 82/150 (54%), Positives = 121/150 (80%) Query: 21 ESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVR 80 + +Q+LTF++G E FA+ I SI+EIIE+ LT VP MP+F+RGVINLRG+VVPVIDL+ R Sbjct: 24 DQQQYLTFMLGAEIFAINILSIKEIIEYGNLTIVPKMPSFIRGVINLRGAVVPVIDLAAR 83 Query: 81 FGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADF 140 F R +++++CI+I+E++ ++ Q ++GV+VDAV+ VL I DQIEP PSFGA IR DF Sbjct: 84 FARGEAAISRKSCIVIIEVEHEDVQQVIGVLVDAVNEVLEIASDQIEPVPSFGAKIRTDF 143 Query: 141 VDGMINVNERFLVVLDVPRVLSVDELASLL 170 ++GM V+++F+++L+V +VLSVDE+A L+ Sbjct: 144 IEGMGKVDQKFVIILNVNQVLSVDEMAELV 173 >ref|YP_004041024.1| chew protein [Methylovorus sp. MP688] gb|ADQ85788.1| CheW protein [Methylovorus sp. MP688] Length = 177 Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 84/150 (56%), Positives = 120/150 (80%) Query: 21 ESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVR 80 + +Q+LTF++G E FA+ I SI+EIIE+ LT VP MP+F+RGVINLRGSVVPVIDL+ R Sbjct: 26 DDQQYLTFMLGAEIFAINILSIKEIIEYGNLTIVPKMPSFIRGVINLRGSVVPVIDLAAR 85 Query: 81 FGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADF 140 F + ++++TCI+I+E++ +E ++GVMVDAV+ VL I DQIEP PSFGA IR DF Sbjct: 86 FEKGEAKLSRKTCIVIIEVEHEEVHQVIGVMVDAVNEVLEIASDQIEPVPSFGAKIRTDF 145 Query: 141 VDGMINVNERFLVVLDVPRVLSVDELASLL 170 ++GM V+++F+++L+V +VLSVDE+A L+ Sbjct: 146 INGMGKVDQKFVIILNVNQVLSVDEMAELV 175 >ref|YP_522182.1| CheW protein [Rhodoferax ferrireducens T118] gb|ABD68651.1| CheW protein [Rhodoferax ferrireducens T118] Length = 185 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/168 (53%), Positives = 129/168 (76%), Gaps = 2/168 (1%) Query: 15 AQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPV 74 AQ ++ E Q+LTF++G E+FA+ I I+EIIE+ GLTEVP+MP +RGVINLRG+VVPV Sbjct: 17 AQTQLEEQTQYLTFMLGGETFAIGILGIKEIIEYHGLTEVPMMPTCIRGVINLRGAVVPV 76 Query: 75 IDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGA 134 +DL+ RFG+ + V+K+TCI+I+E+Q E + +GV+VDAV+AVL I +IEP PSFGA Sbjct: 77 LDLAARFGKQSSEVSKKTCIVIVEVQSGEDRHDMGVVVDAVNAVLEIPASEIEPPPSFGA 136 Query: 135 GIRADFVDGMINVNERFLVVLDVPRVLSVDELASL--LGMSAEDALGG 180 IR+DF++GM V +F+++L+V +VLS +EL +L + SA+ AL G Sbjct: 137 RIRSDFIEGMGKVAGKFVILLNVNQVLSTEELGALGQVAGSADGALTG 184 >ref|ZP_08780704.1| CheW protein [Methylobacter tundripaludum SV96] gb|EGW22879.1| CheW protein [Methylobacter tundripaludum SV96] Length = 185 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 82/149 (55%), Positives = 116/149 (77%) Query: 21 ESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVR 80 E +Q+LTF++ E++A+ I I+EII++ LTEVP MP F+RGVINLRG+VVPVIDLS R Sbjct: 22 EQQQYLTFMLSGETYAIGILRIKEIIQYGQLTEVPRMPDFIRGVINLRGAVVPVIDLSAR 81 Query: 81 FGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADF 140 FG+ PT + +R CIII+E+ E+ +GVMVDAV+AVL I D+IEP P+FG IRADF Sbjct: 82 FGKQPTAIGRRNCIIIIEVMMGEETQNIGVMVDAVNAVLEIPADEIEPAPTFGTNIRADF 141 Query: 141 VDGMINVNERFLVVLDVPRVLSVDELASL 169 + GM +N +F+++L++ VLS+D++A+L Sbjct: 142 IAGMGKINGKFVIILNIQHVLSMDDMAAL 170 >ref|YP_001983400.1| chemotaxis protein [Cellvibrio japonicus Ueda107] gb|ACE83020.1| chemotaxis protein [Cellvibrio japonicus Ueda107] Length = 168 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 83/149 (55%), Positives = 110/149 (73%) Query: 22 SRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRF 81 +QFLTF +G E + + ++ REIIE+SG+TEVPLMP+FLRGVINLRG VVPVIDL+VR Sbjct: 15 KKQFLTFRIGHEHYGLELSQTREIIEYSGITEVPLMPSFLRGVINLRGEVVPVIDLAVRL 74 Query: 82 GRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFV 141 GR P V +RTCII++E+ ++Q +LG++ DAVS V+ I D IE PSFGA IRADF+ Sbjct: 75 GRKPIQVQRRTCIIVVEMHNNDQNHVLGLLADAVSEVIEIEADNIEDAPSFGANIRADFI 134 Query: 142 DGMINVNERFLVVLDVPRVLSVDELASLL 170 G+ + F+V+LD LS+ ELA L+ Sbjct: 135 QGIAKQGDAFVVLLDANSTLSIRELAHLV 163