BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0137.p (122 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774047.1| two-component system sensor histidine kinase... 251 2e-65 ref|YP_004472240.1| response regulator receiver protein [Pseudom... 177 4e-43 ref|YP_004382311.1| two-component system sensor histidine kinase... 174 4e-42 ref|XP_002538134.1| two-component system sensor histidine kinase... 174 5e-42 ref|YP_855580.1| chemotaxis protein CheY [Aeromonas hydrophila s... 173 8e-42 ref|YP_004354767.1| chemotaxis protein CheY [Pseudomonas brassic... 171 3e-41 ref|YP_004393827.1| alkaline phosphatase synthesis transcription... 171 3e-41 ref|ZP_07775689.1| chemotaxis protein CheY [Pseudomonas fluoresc... 171 4e-41 ref|YP_004353525.1| CheY family response regulator [Pseudomonas ... 171 5e-41 ref|NP_900686.1| chemotaxis protein CheY [Chromobacterium violac... 169 1e-40 >ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62139.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD Sbjct: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI Sbjct: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 Query: 121 LP 122 LP Sbjct: 121 LP 122 >ref|YP_004472240.1| response regulator receiver protein [Pseudomonas fulva 12-X] gb|AEF20146.1| response regulator receiver protein [Pseudomonas fulva 12-X] Length = 122 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 80/122 (65%), Positives = 101/122 (82%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K +LIVDDS S+RQ +S LK AGY V E DGK AL+ LDGRK +L+ISD+NMP++D Sbjct: 1 MSKTVLIVDDSASIRQVVSITLKGAGYQVIEGCDGKDALSKLDGRKVHLIISDVNMPNMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 G++FV+ +KQ+PAYKFTPVIMLTTE+ EA+K+EG+AAG +AWV KPFQP +L AV+KLI Sbjct: 61 GITFVKNVKQLPAYKFTPVIMLTTEAGEAKKEEGRAAGAKAWVVKPFQPAQMLTAVSKLI 120 Query: 121 LP 122 LP Sbjct: 121 LP 122 >ref|YP_004382311.1| two-component system sensor histidine kinase/response regulator [Pseudomonas mendocina NK-01] gb|AEB60559.1| two-component system sensor histidine kinase/response regulator, putative [Pseudomonas mendocina NK-01] Length = 122 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 79/122 (64%), Positives = 100/122 (81%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K +LIVDDS S+RQ +S LK AGY V E DGK AL LDGRK +L+ISD+NMP++D Sbjct: 1 MGKTVLIVDDSASIRQVVSITLKGAGYDVIEGCDGKDALTKLDGRKVHLIISDVNMPNMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 G++F++ +KQ+PAYKFTPVIMLTTE+ EA+K EG+AAG +AWV KPFQP +L+AV+KLI Sbjct: 61 GITFLKNVKQLPAYKFTPVIMLTTEAGEAKKDEGRAAGAKAWVVKPFQPAQMLNAVSKLI 120 Query: 121 LP 122 LP Sbjct: 121 LP 122 >ref|XP_002538134.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gb|EEF24248.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 122 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 81/122 (66%), Positives = 101/122 (82%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K IL+VDDS SLRQ +S ALK AGY V EA DGK AL+ L+G+K +L+ISD+NMP++D Sbjct: 1 MAKTILVVDDSASLRQVVSIALKGAGYEVIEANDGKDALSKLNGQKIHLIISDVNMPNMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 G+SFV+ KQ+PAYKFTPVIMLTTE+ E++K EG+AAG +AWV KPFQP +L AV+KLI Sbjct: 61 GISFVKAAKQLPAYKFTPVIMLTTEAGESKKAEGQAAGAKAWVVKPFQPAQMLTAVSKLI 120 Query: 121 LP 122 LP Sbjct: 121 LP 122 >ref|YP_855580.1| chemotaxis protein CheY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gb|ABK39884.1| chemotaxis protein CheY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 122 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 78/122 (63%), Positives = 99/122 (81%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K +LIVDDS ++RQ + LK AGY V EA DGK AL LDG+K NL+ISD+NMP++D Sbjct: 1 MAKTVLIVDDSATIRQVVGMTLKGAGYEVMEACDGKDALKKLDGKKINLIISDVNMPNMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 G+SFV+E K++ +YKFTPVIMLTTES +++KQEG+AAG +AWV KPFQP +L AVAKLI Sbjct: 61 GISFVKEAKKLASYKFTPVIMLTTESQDSKKQEGQAAGAKAWVVKPFQPDQMLAAVAKLI 120 Query: 121 LP 122 +P Sbjct: 121 MP 122 >ref|YP_004354767.1| chemotaxis protein CheY [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69763.1| putative Response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 122 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 77/122 (63%), Positives = 104/122 (85%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K++L+VDDS S+RQ + ALKSAGY V EA+DGK AL L+G+K +L+ISD+NMP++D Sbjct: 1 MAKSVLVVDDSASVRQVVGIALKSAGYDVIEASDGKDALGKLNGQKVHLIISDVNMPNMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 G++FV+E+K++ +YKFTP+IMLTTES E++KQEG+AAG +AWV KPFQP +L AV+KLI Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKQEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 Query: 121 LP 122 LP Sbjct: 121 LP 122 >ref|YP_004393827.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aeromonas veronii B565] gb|AEB51210.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aeromonas veronii B565] Length = 122 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 78/122 (63%), Positives = 99/122 (81%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K ILIVDDS ++RQ + LK AGY V EA+DGK AL LDG+K NL+ISD+NMP++D Sbjct: 1 MGKTILIVDDSATIRQVVGMTLKGAGYEVMEASDGKDALNKLDGKKINLIISDVNMPNMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 G++FV+E K++ YKFTPVIMLTTES +++KQEG+AAG +AWV KPFQP +L AVAKLI Sbjct: 61 GITFVKEAKKLANYKFTPVIMLTTESQDSKKQEGQAAGAKAWVVKPFQPEQMLAAVAKLI 120 Query: 121 LP 122 +P Sbjct: 121 MP 122 >ref|ZP_07775689.1| chemotaxis protein CheY [Pseudomonas fluorescens WH6] gb|EFQ63418.1| chemotaxis protein CheY [Pseudomonas fluorescens WH6] Length = 122 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 77/122 (63%), Positives = 102/122 (83%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M KN+L+VDDS S+RQ + ALKSAGY V EA DGK AL L+G+K +L+ISD+NMP++D Sbjct: 1 MAKNVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLNGQKVHLIISDVNMPNMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 G++FV+E+K++ +YKFTP+IMLTTES E++K EG+AAG +AWV KPFQP +L AV+KLI Sbjct: 61 GITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKPFQPAQMLAAVSKLI 120 Query: 121 LP 122 LP Sbjct: 121 LP 122 >ref|YP_004353525.1| CheY family response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68521.1| putative response regulator, CheY family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 122 Score = 171 bits (432), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 77/122 (63%), Positives = 97/122 (79%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K ILIVDDS S+RQ +S LK AGY V E DG+ AL LDGRK +L++SD+NMP++D Sbjct: 1 MSKTILIVDDSASIRQVVSITLKGAGYEVIEGVDGRDALTKLDGRKIHLIVSDVNMPNMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 GLSF++ KQ+PAYKFTPVIMLTTE+ EA KQ+G+A G +AW+ KPFQP +L AV+KLI Sbjct: 61 GLSFIKAAKQLPAYKFTPVIMLTTETGEAMKQQGQAVGAKAWMVKPFQPAQMLGAVSKLI 120 Query: 121 LP 122 +P Sbjct: 121 MP 122 >ref|NP_900686.1| chemotaxis protein CheY [Chromobacterium violaceum ATCC 12472] gb|AAQ58690.1| chemotaxis protein CheY [Chromobacterium violaceum ATCC 12472] Length = 122 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/122 (65%), Positives = 98/122 (80%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K ILIVDDS +LRQ + L AGY V EA +GK+AL LDGRK +L+ISD+NMP +D Sbjct: 1 MGKTILIVDDSTTLRQVVRMTLAGAGYEVLEAGNGKEALDILDGRKIHLIISDVNMPQMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 GL+ ++ +KQ+P YKFTPVIMLTTES+E +K+EGK AG +AWV KPFQPPVLL AV+KLI Sbjct: 61 GLALLKNIKQLPHYKFTPVIMLTTESAEDKKREGKEAGAKAWVVKPFQPPVLLTAVSKLI 120 Query: 121 LP 122 LP Sbjct: 121 LP 122