BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0111.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774020.1| DNA polymerase III subunit delta [Herbaspiri... 674 0.0 ref|YP_004754507.1| DNA polymerase III subunit delta [Collimonas... 573 e-161 ref|YP_001354588.1| DNA polymerase III subunit delta [Janthinoba... 571 e-161 ref|YP_001100906.1| DNA polymerase III subunit delta [Herminiimo... 570 e-160 ref|ZP_08274163.1| DNA polymerase III delta subunit [Oxalobacter... 482 e-134 ref|ZP_04579970.1| DNA polymerase III subunit delta [Oxalobacter... 439 e-121 ref|ZP_04577821.1| DNA polymerase III subunit delta [Oxalobacter... 421 e-116 gb|AEG68060.1| dna polymerase III (delta subunit) protein [Ralst... 420 e-115 emb|CBJ36879.1| DNA-directed DNA polymerase, delta subunit [Rals... 416 e-114 ref|NP_520863.1| DNA polymerase III subunit delta [Ralstonia sol... 416 e-114 >ref|YP_003774020.1| DNA polymerase III subunit delta [Herbaspirillum seropedicae SmR1] gb|ADJ62112.1| DNA polymerase III (delta subunit) protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/339 (100%), Positives = 339/339 (100%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW Sbjct: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA Sbjct: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE Sbjct: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ Sbjct: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 Query: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLARGR 339 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLARGR Sbjct: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLARGR 339 >ref|YP_004754507.1| DNA polymerase III subunit delta [Collimonas fungivorans Ter331] gb|AEK63684.1| DNA polymerase III delta subunit [Collimonas fungivorans Ter331] Length = 338 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 282/337 (83%), Positives = 308/337 (91%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 MQLR D+LD HL K+LAPLYVI SDEHLLALEA+DKIR+SAR+NG +ER+VLVV+RSFKW Sbjct: 1 MQLRFDALDGHLAKTLAPLYVITSDEHLLALEASDKIRKSARSNGCSERDVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQ+Y A L+PDN+TIISLPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQNYTATLNPDNVTIISLPKLDWAT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 QKAAWV LQQ+AVYIDIPLVER LP WIG RLAAQQQSADR LDFIADRVEGNLLAA Sbjct: 121 QKAAWVATLQQSAVYIDIPLVERAHLPNWIGVRLAAQQQSADRQSLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 HQEIQKLALL+P G+LSFEQ DAVLNVARYDVFKLNEAML GD ARL RMM+GLKGEGE Sbjct: 181 HQEIQKLALLHPPGKLSFEQCHDAVLNVARYDVFKLNEAMLVGDTARLVRMMDGLKGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 ALPLVLWAV+EEIRTLLKLKS AQG+P+ ALLKEYRIWGPRERLMEPALRR+SLA LE Sbjct: 241 ALPLVLWAVSEEIRTLLKLKSAAAQGRPIPALLKEYRIWGPRERLMEPALRRLSLATLEA 300 Query: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLAR 337 AL++AA VD+MVKGLRA++F+GD WDALLQLGLK+A Sbjct: 301 ALKDAAQVDKMVKGLRAKAFSGDAWDALLQLGLKVAH 337 >ref|YP_001354588.1| DNA polymerase III subunit delta [Janthinobacterium sp. Marseille] gb|ABR89038.1| DNA polymerase III delta subunit [Janthinobacterium sp. Marseille] Length = 338 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 279/338 (82%), Positives = 310/338 (91%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 MQLR D+LDAHL K LA LYVI SDEHLLALEAADKIR++ARA Y+EREVLVV+RSFKW Sbjct: 1 MQLRIDALDAHLNKPLAGLYVITSDEHLLALEAADKIRKAARAQAYSEREVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGG+ALQDYAA+LSPDN+T+I+LPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGKALQDYAASLSPDNVTLITLPKLDWAT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 QKAAWV +LQQA+VYIDIPL+ER QLP W+G RLAAQ+QSA+R CLDFIADRVEGNLLAA Sbjct: 121 QKAAWVTSLQQASVYIDIPLIERAQLPAWLGVRLAAQRQSANRECLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 HQEIQKLALLYP G LSFEQ+ DAVLNVARYDVFKLNEAMLSGD RL RM+EGLKGEGE Sbjct: 181 HQEIQKLALLYPEGPLSFEQIHDAVLNVARYDVFKLNEAMLSGDTTRLVRMLEGLKGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 ALPLVLWAV EE+RTLLKLK+G+AQG+P+ L KEYRIWGPRERL+EPALRR+ LA LE Sbjct: 241 ALPLVLWAVAEEVRTLLKLKAGVAQGRPLSQLTKEYRIWGPRERLVEPALRRLKLATLED 300 Query: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLARG 338 ALQEAA +D+MVKGLRA+ F+GD WDA+LQLGLK+ARG Sbjct: 301 ALQEAAQIDKMVKGLRAKQFSGDAWDAMLQLGLKIARG 338 >ref|YP_001100906.1| DNA polymerase III subunit delta [Herminiimonas arsenicoxydans] emb|CAL62785.1| DNA polymerase III, delta subunit [Herminiimonas arsenicoxydans] Length = 338 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 280/338 (82%), Positives = 310/338 (91%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 MQLR D+L HL K LA LYVI SDEHLLALEAADKIR++ARA G++EREVLVV+RSFKW Sbjct: 1 MQLRIDALATHLTKPLAGLYVITSDEHLLALEAADKIRQTARAQGFSEREVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPG+DGG+ALQDYAA+LSPDN+T+I+LPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGRDGGKALQDYAASLSPDNVTLITLPKLDWAT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 QKAAWV +LQQA+V+IDIPLVER QLP W+G RLAAQ QSADR CLDFIA+RVEGNLLAA Sbjct: 121 QKAAWVASLQQASVFIDIPLVERAQLPAWLGVRLAAQGQSADRACLDFIAERVEGNLLAA 180 Query: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 HQEIQKLALLYPAG LSFEQV DAVLNVARYDVFKLNEAMLSGD ARL RM+EGL+GEGE Sbjct: 181 HQEIQKLALLYPAGPLSFEQVHDAVLNVARYDVFKLNEAMLSGDTARLVRMLEGLQGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 ALPLVLWAV EEIRTLLKLKSGMAQG+P+ L KE+RIWGPRERL+EPALRR+ LA LE Sbjct: 241 ALPLVLWAVAEEIRTLLKLKSGMAQGRPLSQLTKEHRIWGPRERLIEPALRRLKLATLES 300 Query: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLARG 338 ALQEAA +D+MVKGLRA+ F+GD WDA+LQLGLK+ARG Sbjct: 301 ALQEAAQIDKMVKGLRAKKFSGDAWDAMLQLGLKIARG 338 >ref|ZP_08274163.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF32367.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/312 (75%), Positives = 277/312 (88%) Query: 28 LLALEAADKIRRSARANGYTEREVLVVERSFKWGELLAANQSQSLFGDKKLIELRIPTGK 87 +LALEAADKIR++ARA G +ER+VL V+RSFKWGEL AAN QSLFGD+KLIELR+PTGK Sbjct: 1 MLALEAADKIRKTARAQGLSERDVLQVDRSFKWGELTAANNEQSLFGDRKLIELRLPTGK 60 Query: 88 PGKDGGQALQDYAANLSPDNLTIISLPKLDWATQKAAWVGALQQAAVYIDIPLVERPQLP 147 PGK+GGQALQ YAA+ +PDN+T+I+LPKLDWAT KAAWVG LQQ+AVYI+IPL+ER QLP Sbjct: 61 PGKEGGQALQQYAASPNPDNVTLITLPKLDWATAKAAWVGTLQQSAVYIEIPLIERNQLP 120 Query: 148 GWIGNRLAAQQQSADRPCLDFIADRVEGNLLAAHQEIQKLALLYPAGQLSFEQVQDAVLN 207 GWI RLAAQ QSA+R L+F+A+RVEGNLLAAHQEIQKL LL+ GQLSFEQV DAVLN Sbjct: 121 GWISTRLAAQGQSAERDALNFMAERVEGNLLAAHQEIQKLGLLHGDGQLSFEQVHDAVLN 180 Query: 208 VARYDVFKLNEAMLSGDIARLTRMMEGLKGEGEALPLVLWAVTEEIRTLLKLKSGMAQGK 267 VARYDVFKLNEAML+GD+ARL RM++GL+GEGEALPLVLWAV EEIRTLLK+K+ M QG+ Sbjct: 181 VARYDVFKLNEAMLAGDVARLVRMLDGLQGEGEALPLVLWAVAEEIRTLLKIKTAMEQGQ 240 Query: 268 PVGALLKEYRIWGPRERLMEPALRRISLAALEQALQEAALVDRMVKGLRARSFAGDPWDA 327 PVG LLK+YRIWGPRE+LMEPALRR+S+A LE A+Q+AA +DR+VKGLRA + AGD WDA Sbjct: 241 PVGQLLKQYRIWGPREKLMEPALRRLSMATLEAAIQKAAQLDRLVKGLRAPALAGDAWDA 300 Query: 328 LLQLGLKLARGR 339 + QL L +AR R Sbjct: 301 MRQLALGVARPR 312 >ref|ZP_04579970.1| DNA polymerase III subunit delta [Oxalobacter formigenes OXCC13] gb|EEO30943.1| DNA polymerase III subunit delta [Oxalobacter formigenes OXCC13] Length = 336 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 205/336 (61%), Positives = 264/336 (78%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 M L++++L++HL K LAPLY++ DEHLLALEAAD+IR +AR +TEREVL VERSFKW Sbjct: 1 MFLKYEALESHLQKELAPLYILTGDEHLLALEAADRIRHAARTRDFTEREVLTVERSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 G+L A N + SLFGDKKLIELRIPTG+PGK+G ALQ+Y A L+PDN+T+I+LPKLDW T Sbjct: 61 GQLQATNNAMSLFGDKKLIELRIPTGRPGKEGSTALQEYVAGLNPDNITLITLPKLDWTT 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 QK+AWV ALQ+ +YID+P ++ +L WI +RLA Q+QS DR +DF+ +RVEGNLLAA Sbjct: 121 QKSAWVSALQKHGIYIDVPTIDLSRLGNWISSRLAKQKQSIDREGIDFLVNRVEGNLLAA 180 Query: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 HQEIQKLALL+P G+LSFEQV +VLNVARYDVFKL EAML G+ R +M+EGLKGEGE Sbjct: 181 HQEIQKLALLFPEGKLSFEQVCSSVLNVARYDVFKLTEAMLGGNRTRFIKMVEGLKGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 LPL+LW VT+EIRTLLK K + +G+ ++ K R+ GPRER ++ + R+ L++ Sbjct: 241 PLPLILWTVTDEIRTLLKCKMALEEGQAFASVSKSLRLRGPRERFIQSTVNRLDKNNLQK 300 Query: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLA 336 ALQ+ A +D+++KGLR+ S D WDAL QLGL +A Sbjct: 301 ALQQTAQIDKIIKGLRSDSMMDDAWDALTQLGLSIA 336 >ref|ZP_04577821.1| DNA polymerase III subunit delta [Oxalobacter formigenes HOxBLS] gb|EEO28783.1| DNA polymerase III subunit delta [Oxalobacter formigenes HOxBLS] Length = 338 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 202/337 (59%), Positives = 260/337 (77%) Query: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 M L++++L++HL K LA LYV+ DEHLL LEAAD IR++AR + ERE+L VER FKW Sbjct: 1 MFLKYETLESHLNKELASLYVLTGDEHLLLLEAADMIRKAARDRHFGEREILTVERGFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 G+L AAN + SLFG +KLIELRIP GKPGK+G Q LQ+YAA L+PDN+T+I+LPKLDWA+ Sbjct: 61 GQLHAANNAMSLFGGRKLIELRIPGGKPGKEGSQTLQEYAAELNPDNVTLITLPKLDWAS 120 Query: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 QK AWV ALQ+ +YI+IP +E +L WI RL Q Q+A++ +DF+ +RVEGNLLAA Sbjct: 121 QKTAWVSALQKNGIYIEIPSIELSRLGNWISERLKKQNQTANKQGIDFLVERVEGNLLAA 180 Query: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 HQEIQKL LLYP G+L FEQ+ ++VLNVARYD+FKLNEAML G+ AR RMMEGLKGEGE Sbjct: 181 HQEIQKLGLLYPEGELGFEQICNSVLNVARYDIFKLNEAMLGGNRARFIRMMEGLKGEGE 240 Query: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 LPL+LW TEEIRTLLK K+ + G+ A K R+ G RE+L++ A+ R+ L+ Sbjct: 241 PLPLILWTFTEEIRTLLKCKTALESGQTFPATAKTLRLRGQREKLIQMAVNRLEKKDLQI 300 Query: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLAR 337 ALQ+ A +D+++KGLR+ S+ D WDAL+QLGL +AR Sbjct: 301 ALQQTAQIDKIIKGLRSDSWMDDAWDALMQLGLFIAR 337 >gb|AEG68060.1| dna polymerase III (delta subunit) protein [Ralstonia solanacearum Po82] Length = 358 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/350 (61%), Positives = 265/350 (75%), Gaps = 13/350 (3%) Query: 1 MQLRHDSLDAHL----GKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVER 56 MQLR D+L+ HL K LAPLYV+ DEHLL LEA D +R++ARA G++ER+V+ VER Sbjct: 1 MQLRLDALEGHLKQAGSKGLAPLYVVHGDEHLLVLEAVDALRQTARAQGFSERDVMTVER 60 Query: 57 SFKWGELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSP----DNLTIIS 112 F W + A QS SLFGD+K++ELRIP+GKPGKDGG+AL+ AA SP D +T+I+ Sbjct: 61 GFSWSRVTEAQQSMSLFGDRKIVELRIPSGKPGKDGGEALRALAAGTSPGSATDTVTLIT 120 Query: 113 LPKLDWATQKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSAD-----RPCLD 167 LP+LD+AT K+AW AL+ A V I + V+R +LPGWIG RLA QQQ + R L Sbjct: 121 LPRLDFATAKSAWFAALEGAGVSIKVDSVDRTKLPGWIGERLARQQQRVEAGEPGRRALQ 180 Query: 168 FIADRVEGNLLAAHQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIAR 227 FIADRVEGNLLAAHQEIQKLALL+P G LSF+ V DAVLNVARYDVFKL+EAML+GD+ R Sbjct: 181 FIADRVEGNLLAAHQEIQKLALLHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLAGDVPR 240 Query: 228 LTRMMEGLKGEGEALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLME 287 L RM+EGL+GEGEA LVLW +TEEIR L K+ SG AQGKP+ ++L+E R+WGPRERL+ Sbjct: 241 LVRMLEGLRGEGEATVLVLWTLTEEIRVLSKIASGSAQGKPMASMLRELRVWGPRERLVP 300 Query: 288 PALRRISLAALEQALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLAR 337 A++R+S LE ALQ AA +DR VKGLR S +PWD LLQL +++AR Sbjct: 301 QAVQRLSQHDLEAALQMAARLDRQVKGLREPSLPAEPWDGLLQLAMRIAR 350 >emb|CBJ36879.1| DNA-directed DNA polymerase, delta subunit [Ralstonia solanacearum CMR15] Length = 358 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/350 (60%), Positives = 263/350 (75%), Gaps = 13/350 (3%) Query: 1 MQLRHDSLDAHL----GKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVER 56 MQLR D+L+ HL K LAPLYV+ DEHLL LEA D +R++ARA G++EREV+ VER Sbjct: 1 MQLRLDALEGHLKQAGSKGLAPLYVVHGDEHLLVLEAVDALRQAARAQGFSEREVMTVER 60 Query: 57 SFKWGELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANL----SPDNLTIIS 112 F W + A QS SLFGD+K++ELRIP+GKPGKDGG+AL+ AA + D +T+I+ Sbjct: 61 GFSWSRVTEAQQSMSLFGDRKIVELRIPSGKPGKDGGEALRALAAGTPSGPATDTVTLIT 120 Query: 113 LPKLDWATQKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSAD-----RPCLD 167 LP+LD+AT K+AW AL+ A V I + V+R +LPGWIG RLA QQQ + R L Sbjct: 121 LPRLDFATAKSAWFAALEGAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGEPGRRALQ 180 Query: 168 FIADRVEGNLLAAHQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIAR 227 FIADRVEGNLLAAHQEIQKL LL+P G LSF+ V DAVLNVARYDVFKL+EAMLSGD+ R Sbjct: 181 FIADRVEGNLLAAHQEIQKLGLLHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLSGDVPR 240 Query: 228 LTRMMEGLKGEGEALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLME 287 L RM+EGL+GEGEA LVLW +TEEIR L K+ SG AQGKP+ ++L+E R+WGPRERL+ Sbjct: 241 LVRMLEGLRGEGEATVLVLWTLTEEIRVLSKIASGAAQGKPMASMLRELRVWGPRERLVP 300 Query: 288 PALRRISLAALEQALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLAR 337 A++R+S LE ALQ AA +DR VKGLR S +PWD LLQL +++AR Sbjct: 301 QAVQRLSQPELEAALQMAARLDRQVKGLREPSLPAEPWDGLLQLAMRIAR 350 >ref|NP_520863.1| DNA polymerase III subunit delta [Ralstonia solanacearum GMI1000] emb|CAD16449.1| probable dna polymerase III (delta subunit) protein [Ralstonia solanacearum GMI1000] Length = 358 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/350 (60%), Positives = 263/350 (75%), Gaps = 13/350 (3%) Query: 1 MQLRHDSLDAHL----GKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVER 56 MQLR D+L+ HL K LAPLYV+ DEHLL LEA D +R++ARA G++EREV+ VER Sbjct: 1 MQLRLDALEGHLKQAGSKGLAPLYVVHGDEHLLVLEAVDALRQAARAQGFSEREVMTVER 60 Query: 57 SFKWGELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANL----SPDNLTIIS 112 F W + A QS SLFGD+K++ELRIP+GKPGKDGG+AL+ AA + D +T+I+ Sbjct: 61 GFSWSRVTEAQQSMSLFGDRKIVELRIPSGKPGKDGGEALRALAAGTPSGPAADTVTLIT 120 Query: 113 LPKLDWATQKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSAD-----RPCLD 167 LP+LD+AT K+AW AL+ A V I + V+R +LPGWIG RLA QQQ + R L Sbjct: 121 LPRLDFATAKSAWFAALEGAGVSIKVDSVDRAKLPGWIGERLARQQQRVEAGESGRRALQ 180 Query: 168 FIADRVEGNLLAAHQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIAR 227 FIADRVEGNLLAAHQEIQKL LL+P G LSF+ V DAVLNVARYDVFKL+EAMLSGD+ R Sbjct: 181 FIADRVEGNLLAAHQEIQKLGLLHPPGVLSFDAVHDAVLNVARYDVFKLSEAMLSGDVPR 240 Query: 228 LTRMMEGLKGEGEALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLME 287 L RM+EGL+GEGEA LVLW +TEEIR L K+ SG AQGKP+ ++L+E R+WGPRERL+ Sbjct: 241 LVRMLEGLRGEGEATVLVLWTLTEEIRVLSKIASGAAQGKPMASMLRELRVWGPRERLVP 300 Query: 288 PALRRISLAALEQALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLAR 337 A++R+S LE ALQ AA +DR VKGLR S +PWD LLQL +++AR Sbjct: 301 QAVQRLSQPELEAALQMAARLDRQVKGLREPSLPAEPWDGLLQLAMRIAR 350