BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0038.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773948.1| repressor transcription regulator protein [H... 531 e-149 ref|YP_001354594.1| transcriptional regulator [Janthinobacterium... 319 2e-85 ref|ZP_02882561.1| Helix-turn-helix type 11 domain protein [Burk... 241 7e-62 ref|YP_001763972.1| helix-turn-helix type 11 domain-containing p... 239 3e-61 ref|YP_003905711.1| helix-turn-helix type 11 domain-containing p... 239 3e-61 ref|YP_620108.1| helix-turn-helix, type 11 [Burkholderia cenocep... 236 3e-60 ref|YP_001118514.1| helix-turn-helix, type 11 domain-containing ... 234 1e-59 ref|YP_004359279.1| helix-turn-helix, type 11 [Burkholderia glad... 233 2e-59 ref|ZP_03270981.1| Helix-turn-helix type 11 domain protein [Burk... 233 2e-59 ref|YP_002232425.1| putative DNA-binding protein [Burkholderia c... 233 2e-59 >ref|YP_003773948.1| repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62040.1| repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 261/262 (99%), Positives = 262/262 (100%) Query: 1 LHSSIEAGGHCSGGMPEWRASCFPAPAMRRADRLFQITQYLRGRRLTTARQLATWLSVSE 60 +HSSIEAGGHCSGGMPEWRASCFPAPAMRRADRLFQITQYLRGRRLTTARQLATWLSVSE Sbjct: 1 MHSSIEAGGHCSGGMPEWRASCFPAPAMRRADRLFQITQYLRGRRLTTARQLATWLSVSE 60 Query: 61 RTIYRDIRDLSLSGVPVDGEAGVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQ 120 RTIYRDIRDLSLSGVPVDGEAGVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQ Sbjct: 61 RTIYRDIRDLSLSGVPVDGEAGVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQ 120 Query: 121 LGASAASALAKVVLALPKEKRDFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLD 180 LGASAASALAKVVLALPKEKRDFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLD Sbjct: 121 LGASAASALAKVVLALPKEKRDFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLD 180 Query: 181 YSDAQQRASQRVVWPLALAFFGGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGR 240 YSDAQQRASQRVVWPLALAFFGGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGR Sbjct: 181 YSDAQQRASQRVVWPLALAFFGGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGR 240 Query: 241 RLPDFVRAMQRQVRQARAQGPA 262 RLPDFVRAMQRQVRQARAQGPA Sbjct: 241 RLPDFVRAMQRQVRQARAQGPA 262 >ref|YP_001354594.1| transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR89852.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 164/226 (72%), Positives = 190/226 (84%) Query: 28 MRRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRI 87 MRRA+RLFQI QYLRGRRLTTA QL+ WL VSERTIYRDIRDLSLSGVP++GEAGVGYR+ Sbjct: 1 MRRAERLFQIAQYLRGRRLTTALQLSEWLYVSERTIYRDIRDLSLSGVPIEGEAGVGYRV 60 Query: 88 KPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEAT 147 K G+DL PLMF++DEI+ALV GMRMVQAWGGPQL AS A+ALAK+ LALP+EKRDFVEAT Sbjct: 61 KAGFDLQPLMFSSDEIEALVAGMRMVQAWGGPQLAASGAAALAKITLALPREKRDFVEAT 120 Query: 148 PLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLL 207 PLFAP E GERLE IRQAIG ++KL LDY DA+Q+AS R +WPLAL F+G W + Sbjct: 121 PLFAPDFHIEACHGERLENIRQAIGKQNKLRLDYIDAKQQASCRTIWPLALYFWGSGWSI 180 Query: 208 AAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQV 253 AAWCE R DFRSFRLDRVQ +++ G Y +GRRL DFVRAM+R++ Sbjct: 181 AAWCETRSDFRSFRLDRVQALADGGPYAGVSGRRLADFVRAMKREM 226 >ref|ZP_02882561.1| Helix-turn-helix type 11 domain protein [Burkholderia graminis C4D1M] gb|EDT11764.1| Helix-turn-helix type 11 domain protein [Burkholderia graminis C4D1M] Length = 248 Score = 241 bits (616), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 117/234 (50%), Positives = 162/234 (69%), Gaps = 1/234 (0%) Query: 23 FPAPAM-RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEA 81 + P M RRADRLFQI + LRGRRLTTA+QLA WL++S RT+YRD+RDL LSGVP++GEA Sbjct: 14 YKTPTMTRRADRLFQIAELLRGRRLTTAQQLADWLNISLRTVYRDVRDLQLSGVPIEGEA 73 Query: 82 GVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKR 141 G+GYR+ LPPL F ADE+ AL G RM+++WGG + A ALAK+ A+P +KR Sbjct: 74 GIGYRLSRSASLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKR 133 Query: 142 DFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFF 201 +E +FAP+ + +L+ + +AI +RH + Y+DA A++R VWPLALA++ Sbjct: 134 ASLERLAIFAPSFHIKSDFSTQLDTLHRAIDARHVVSFAYTDANGAATERRVWPLALAYW 193 Query: 202 GGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVRQ 255 G W L AWCE R DFR+F L+++QQ+ + YPD+ GRRL D +R + + +Q Sbjct: 194 GARWTLGAWCELRGDFRNFGLEKIQQLEVREPYPDQEGRRLADLLRHVNAKPKQ 247 >ref|YP_001763972.1| helix-turn-helix type 11 domain-containing protein [Burkholderia cenocepacia MC0-3] gb|ACA89850.1| Helix-turn-helix type 11 domain protein [Burkholderia cenocepacia MC0-3] Length = 228 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 115/226 (50%), Positives = 157/226 (69%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA WLSVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F A+E+ AL G RM++ WGG + +SA SALAK+ A+P +KR ++ P Sbjct: 63 RNASLPPLTFTAEELAALATGARMLETWGGARFASSARSALAKIASAMPADKRTALDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + +++AI QAI +RH + DY D SQR VWPL L ++GG W + Sbjct: 123 VFAPSFHIDETFCAKVDAIHQAIDTRHIVSFDYRDRLGAHSQRRVWPLGLVYWGGRWTIG 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR 254 AWCE R+DFR+F + R+ ++ +PD GRR+ D++R + +R Sbjct: 183 AWCELRDDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228 >ref|YP_003905711.1| helix-turn-helix type 11 domain-containing protein [Burkholderia sp. CCGE1003] gb|ADN56420.1| helix-turn-helix type 11 domain protein [Burkholderia sp. CCGE1003] Length = 246 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/230 (51%), Positives = 160/230 (69%), Gaps = 1/230 (0%) Query: 26 PAM-RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVG 84 P M RRADRLFQI + LRGRRLTTA+QLA WL +S RT+YRD+RDL LSGVP++GEAG+G Sbjct: 17 PTMTRRADRLFQIAELLRGRRLTTAQQLADWLDISLRTVYRDVRDLQLSGVPIEGEAGIG 76 Query: 85 YRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFV 144 YR+ LPPL F ADE+ AL G RM+++WGG + A ALAK+ A+P +KR + Sbjct: 77 YRLSRSASLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKRASL 136 Query: 145 EATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGT 204 E +FAP+ ++L+ + +AI +RH + Y+DA AS+R VWPLALA++G Sbjct: 137 ERLAIFAPSFHIRGDFSDQLDTLHRAIDTRHVVSFAYTDANGAASERRVWPLALAYWGAR 196 Query: 205 WLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR 254 W L AWCE R DFR+F L+++QQ++ + YPD+ GRRL D +R + + R Sbjct: 197 WTLGAWCELRGDFRNFGLEKIQQLAVREPYPDQEGRRLADLLRHVNARPR 246 >ref|YP_620108.1| helix-turn-helix, type 11 [Burkholderia cenocepacia AU 1054] ref|YP_834351.1| helix-turn-helix, type 11 domain-containing protein [Burkholderia cenocepacia HI2424] gb|ABF75135.1| Helix-turn-helix, type 11 [Burkholderia cenocepacia AU 1054] gb|ABK07458.1| Helix-turn-helix, type 11 domain protein [Burkholderia cenocepacia HI2424] Length = 228 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 155/226 (68%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA WLSVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F A+E+ AL G RM++ WGG + + A SALAK+ A+P +KR ++ P Sbjct: 63 RNASLPPLTFTAEELAALATGARMLETWGGARFASGARSALAKIASAMPADKRTALDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + +++AI QAI +RH + DY D SQR VWPL L ++GG W + Sbjct: 123 VFAPSFHIDETFCAKVDAIHQAIDTRHIVSFDYRDRLGAHSQRRVWPLGLVYWGGRWTIG 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR 254 AWCE R DFR+F + R+ ++ +PD GRR+ D++R + +R Sbjct: 183 AWCELRGDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228 >ref|YP_001118514.1| helix-turn-helix, type 11 domain-containing protein [Burkholderia vietnamiensis G4] gb|ABO53679.1| Helix-turn-helix, type 11 domain protein [Burkholderia vietnamiensis G4] Length = 228 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 154/222 (69%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA WLSVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F A+E+ AL +G RM++ WGG + A SALAK+ A+P +KR ++ P Sbjct: 63 RNASLPPLTFTAEELAALAVGARMLETWGGARFAGGARSALAKIASAMPADKRTALDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + +++AI QA+ +RH + DY D ++R VWPL L ++GG W + Sbjct: 123 VFAPSFHIDETFCAKVDAIHQAVDTRHIVSFDYRDRLGAHTKRRVWPLGLVYWGGRWTIG 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQ 250 AWCE R+DFR+F + R+ ++ +PD GRR+ D++R Q Sbjct: 183 AWCELRDDFRTFDIARMGDITLHEPFPDVEGRRIADYMRIAQ 224 >ref|YP_004359279.1| helix-turn-helix, type 11 [Burkholderia gladioli BSR3] gb|AEA59323.1| helix-turn-helix, type 11 [Burkholderia gladioli BSR3] Length = 242 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 112/224 (50%), Positives = 155/224 (69%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA W+SVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLAQWMSVSLRTVYRDVRDLQLSGVPIEGEAGIGYRLD 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F ADE+ AL G RM+++WGG + A SALAK+ A+P +KR ++ P Sbjct: 63 RSASLPPLTFTADELAALAAGARMLESWGGARFAGGARSALAKIASAMPADKRIVLDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + + ++ + +A+ R + Y D Q AS+R +WPL L ++GG W L+ Sbjct: 123 VFAPSQRVDATYSQTMDVLHRALDERRVVHFQYRDKQDAASERRIWPLGLVYWGGQWTLS 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQ 252 AWCE R DFR+F + R+++ S +PD +GRRL DF+R R+ Sbjct: 183 AWCELRGDFRNFDVVRIREPSVHEVHPDLDGRRLADFLRIAHRE 226 >ref|ZP_03270981.1| Helix-turn-helix type 11 domain protein [Burkholderia sp. H160] gb|EDZ97436.1| Helix-turn-helix type 11 domain protein [Burkholderia sp. H160] Length = 247 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/234 (48%), Positives = 159/234 (67%), Gaps = 1/234 (0%) Query: 23 FPAPAM-RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEA 81 +P P M RRADRLFQI + LRGRRLTTA+QLA WL++S RT+YRD+RDL LSGVP++GEA Sbjct: 14 YPTPTMTRRADRLFQIAELLRGRRLTTAQQLADWLNISLRTVYRDVRDLQLSGVPIEGEA 73 Query: 82 GVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKR 141 G+GYR+ LPPL F ADE+ AL G RM+++WGG + A ALAK+ A+P +KR Sbjct: 74 GIGYRLSRSASLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKR 133 Query: 142 DFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFF 201 +E +FAP+ + +L+ + +AI +R + Y+DA ++R VWPLALA++ Sbjct: 134 AALERLAIFAPSFHIKGDFSTQLDTLHRAIDTRQVVHFAYTDANGADTERRVWPLALAYW 193 Query: 202 GGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVRQ 255 G W L AWCE R DFR+F L++++ + YPD+ GRRL D +R + + R+ Sbjct: 194 GARWTLGAWCELRGDFRNFGLEKMRDLKVLETYPDQEGRRLADLLRHLNAKPRR 247 >ref|YP_002232425.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] emb|CAR53645.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 228 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 112/226 (49%), Positives = 154/226 (68%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA WLSVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F A+E+ AL G RM++ WGG + + A SALA + A+P +KR ++ P Sbjct: 63 RNASLPPLTFTAEELAALATGARMLETWGGARFASGARSALANIASAMPADKRTALDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + +++AI QAI +RH + Y D SQR VWPL L ++GG W + Sbjct: 123 VFAPSFHIDETFCAKVDAIHQAIDTRHIVSFGYRDRLGAHSQRRVWPLGLVYWGGRWTIG 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR 254 AWCE R+DFR+F + R+ ++ +PD GRR+ D++R + +R Sbjct: 183 AWCELRDDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228