BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0023.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773935.1| GntR family transcription regulator protein ... 346 9e-94 ref|YP_003981790.1| GntR family transcriptional regulator [Achro... 224 4e-57 ref|YP_586253.1| transcriptional regulatory protein PtsJ [Cupria... 221 4e-56 gb|EFV86558.1| GntR family Transcriptional regulator [Achromobac... 219 1e-55 ref|YP_786123.1| GntR family transcriptional regulator [Bordetel... 202 1e-50 ref|NP_885097.1| GntR family transcriptional regulator [Bordetel... 176 1e-42 ref|ZP_02700678.1| GntR-family transcriptional regulator [Salmon... 175 3e-42 ref|YP_002216506.1| GntR family transcriptional regulator [Salmo... 175 3e-42 ref|YP_001586784.1| hypothetical protein SPAB_00518 [Salmonella ... 174 4e-42 ref|ZP_02829817.1| GntR-family transcriptional regulator [Salmon... 174 4e-42 >ref|YP_003773935.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62027.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 346 bits (888), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 177/184 (96%), Positives = 179/184 (97%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 VLVIVDDHF+L S ARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR Sbjct: 248 VLVIVDDHFALTSMARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 307 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 LSPGGSWVSHFLQDSIESAL RPDTA LMQQARADYAARRERLERALHK+GIACATGGDG Sbjct: 308 LSPGGSWVSHFLQDSIESALSRPDTARLMQQARADYAARRERLERALHKEGIACATGGDG 367 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAA KLAADLR Sbjct: 368 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAGKLAADLR 427 Query: 181 RSLS 184 RSLS Sbjct: 428 RSLS 431 >ref|YP_003981790.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP19075.1| bacterial regulatory protein, GntR family protein 66 [Achromobacter xylosoxidans A8] Length = 431 Score = 224 bits (571), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 113/182 (62%), Positives = 136/182 (74%) Query: 2 LVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTRL 61 +VIVDDH++L+S YHSV+P+ A RWALVRSFSK LGPD+R+A VASD ATS+ LR RL Sbjct: 249 MVIVDDHYALLSGKAYHSVLPSGAQRWALVRSFSKTLGPDVRLAMVASDPATSRQLRLRL 308 Query: 62 SPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDGL 121 + G SWVSH LQD +E LGRP+ A M AR DYA RR+ LE AL QG+A A GDGL Sbjct: 309 ASGTSWVSHLLQDMVEVTLGRPEVAKQMALARKDYAQRRKALENALLDQGVAYAADGDGL 368 Query: 122 NLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLRR 181 NLW+ L DDQA AL++A GWL+RHG+AF VQ+ V GLRITLSA+E KLA D+R Sbjct: 369 NLWVPLDTDDQAVALALAHRGWLVRHGDAFGVQEPVRGLRITLSAIEPGQCRKLARDIRE 428 Query: 182 SL 183 S+ Sbjct: 429 SM 430 >ref|YP_586253.1| transcriptional regulatory protein PtsJ [Cupriavidus metallidurans CH34] gb|ABF10984.1| transcriptional regulator with aminotransferase and DNA binding domains (possibly involved in vitB6 biosynthesis) [Cupriavidus metallidurans CH34] Length = 431 Score = 221 bits (563), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/183 (61%), Positives = 135/183 (73%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 V VIVDDHF+L+S A YH VIP + RWA+VRSF+KALGPDLRVAAVASD ATS+ LR Sbjct: 248 VPVIVDDHFALLSGAAYHPVIPRSTYRWAVVRSFTKALGPDLRVAAVASDVATSRQLRLC 307 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 L+PG SWVSH LQD +E + RP+T L+ +AR DYA RR+ +E+AL QGI GDG Sbjct: 308 LAPGTSWVSHLLQDIVEVTVTRPETIRLIDKARNDYARRRQAMEQALDAQGIGHMAQGDG 367 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 NLW+ L DDQA AL++AR GWL+R G FSVQ V GLRIT+SA+E +LA D+R Sbjct: 368 FNLWVPLQCDDQAIALALARQGWLVRQGSVFSVQDGVRGLRITISAIEPAQCERLAQDIR 427 Query: 181 RSL 183 RSL Sbjct: 428 RSL 430 >gb|EFV86558.1| GntR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 431 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 111/183 (60%), Positives = 134/183 (73%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 V+VI+DDHF+L+S A YHS + RWAL+RSFSKALGPD+RVA VASDAATS+ LRTR Sbjct: 248 VMVILDDHFALLSEAAYHSALAPQTQRWALIRSFSKALGPDVRVALVASDAATSRQLRTR 307 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 L+ G WVSH LQD +E LG+P A M +AR DYAARR +LE AL +QG+ C GDG Sbjct: 308 LASGTGWVSHLLQDMVEVTLGQPQVASQMARARQDYAARRRQLEDALREQGLPCLENGDG 367 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 LNLW+ L DDQA AL++AR GWL+RHG AF VQ ++GLRITLS + KLA D+ Sbjct: 368 LNLWVPLDTDDQAVALALARKGWLVRHGGAFGVQGGINGLRITLSGMTPAQCRKLAQDIG 427 Query: 181 RSL 183 SL Sbjct: 428 HSL 430 >ref|YP_786123.1| GntR family transcriptional regulator [Bordetella avium 197N] emb|CAJ49212.1| GntR-family transcriptional regulator [Bordetella avium 197N] Length = 438 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 107/184 (58%), Positives = 130/184 (70%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 VL+I+DDHF+L+S + Y+S +P A RWALVRSFSKALGPDLR+AA+ASD +TS LR R Sbjct: 246 VLLIIDDHFALLSRSPYYSALPRRAGRWALVRSFSKALGPDLRMAAIASDPSTSAQLRLR 305 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 L+ G +WVSH LQD E+AL P++ + ARADY RR+ LE AL QGI+ GDG Sbjct: 306 LASGTNWVSHLLQDMAETALTHPESIRQLSAARADYQQRRQTLEAALRNQGISFLAHGDG 365 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 LNLW+ L D A +AR GWLLRHG+AFSVQ V GLRITLS L +LA DL Sbjct: 366 LNLWVPLPAQDLDVAQDLARQGWLLRHGQAFSVQAPVQGLRITLSTLLPAQCEQLARDLH 425 Query: 181 RSLS 184 RSL+ Sbjct: 426 RSLA 429 >ref|NP_885097.1| GntR family transcriptional regulator [Bordetella parapertussis 12822] emb|CAE38195.1| GntR-family transcriptional regulator [Bordetella parapertussis] Length = 443 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 100/183 (54%), Positives = 120/183 (65%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 V+VI DDHF+ +S + YHS IPAAA RWALVRS SKALGPDLR+A VASD TS+ LR R Sbjct: 248 VMVIADDHFAHLSASPYHSPIPAAALRWALVRSVSKALGPDLRLAFVASDPDTSRRLRLR 307 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 L+ G +WVSH LQD + L M QAR YA RR L AL +GIA DG Sbjct: 308 LASGTTWVSHLLQDVVAGCLASAPVQARMAQARRAYAQRRTWLADALRAEGIAAQWPADG 367 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 LNLW+ L+ D A L +A GW LR+G +F V++ VHGLRIT++ LE A +LA DLR Sbjct: 368 LNLWVPLAQDSPALLLELAHRGWRLRNGRSFGVREDVHGLRITIATLEHATARRLARDLR 427 Query: 181 RSL 183 L Sbjct: 428 LCL 430 >ref|ZP_02700678.1| GntR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gb|EDX49304.1| GntR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 430 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 93/184 (50%), Positives = 123/184 (66%), Gaps = 1/184 (0%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 VLVI+DDHF+L+S++ + VI WA++RS SKALGPDLR+A VASD+ATS LR R Sbjct: 247 VLVIIDDHFALLSSSPWQQVIAQTTQHWAVIRSVSKALGPDLRLAIVASDSATSAKLRLR 306 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 L+ G WVSH LQD + + L P+ + Q R YAAR+++L RAL + GIA + GDG Sbjct: 307 LNAGSQWVSHLLQDLVYACLTDPEYQHRLAQTRLFYAARQQKLARALQQYGIAISP-GDG 365 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 +N W+ L QA A ++A+ GWL+R GEAF V HGLRITLS L LAAD+ Sbjct: 366 VNAWLPLDTHSQATAFTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDGEINTLAADIH 425 Query: 181 RSLS 184 ++L+ Sbjct: 426 QALN 429 >ref|YP_002216506.1| GntR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gb|ACH73802.1| GntR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gb|EGE30605.1| GntR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. SD3246] Length = 430 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 92/184 (50%), Positives = 123/184 (66%), Gaps = 1/184 (0%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 V+VI+DDHF+L+S++ + VI WA++RS SKALGPDLR+A VASD+ATS LR R Sbjct: 247 VVVIIDDHFALLSSSPWQPVIAQTTQHWAVIRSVSKALGPDLRLAIVASDSATSAKLRLR 306 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 L+ G WVSH LQD + + L P+ + Q R YAAR+++L RAL + GIA + GDG Sbjct: 307 LNAGSQWVSHLLQDLVYACLTDPEYQHRLTQTRLFYAARQQKLARALQQYGIAISP-GDG 365 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 +N W+ L QA A ++A+ GWL+R GEAF V HGLRITLS L LAAD+ Sbjct: 366 VNAWLPLDTHSQATAFTLAKSGWLVREGEAFGVSTPSHGLRITLSTLNDGEINTLAADIH 425 Query: 181 RSLS 184 ++L+ Sbjct: 426 QALN 429 >ref|YP_001586784.1| hypothetical protein SPAB_00518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gb|ABX65951.1| hypothetical protein SPAB_00518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 430 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 92/184 (50%), Positives = 122/184 (66%), Gaps = 1/184 (0%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 VLVI+DDHF+L+S++ + VI WA++RS SK LGPDLR+A VASD+ATS LR R Sbjct: 247 VLVIIDDHFALLSSSPWQPVIAQTTQHWAVIRSVSKTLGPDLRLAIVASDSATSAKLRLR 306 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 L+ G WVSH LQD + + L P+ + Q R YAAR+++L RAL + GIA + GDG Sbjct: 307 LNAGSQWVSHLLQDLVYACLTDPEYQHRLTQTRLFYAARQQKLARALQQYGIAISP-GDG 365 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 +N W+ L QA A ++A+ GWL+R GEAF V HGLRITLS L LAAD+ Sbjct: 366 VNAWLPLDTHSQATAFTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDSEINTLAADIH 425 Query: 181 RSLS 184 ++L+ Sbjct: 426 QALN 429 >ref|ZP_02829817.1| GntR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gb|EDZ31513.1| GntR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] emb|CBY96696.1| Serine hydroxymethyltransferase Serine methylase; SHMT [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 430 Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 92/184 (50%), Positives = 122/184 (66%), Gaps = 1/184 (0%) Query: 1 VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60 VLVI+DDHF+L+S++ + SVI WA++RS SKALGPDLR+A VASD+ATS LR R Sbjct: 247 VLVIIDDHFALLSSSPWQSVIAQTTQHWAVIRSVSKALGPDLRLAIVASDSATSAKLRLR 306 Query: 61 LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120 L+ G WVSH LQD + + L P+ + Q R Y R+++L RAL + GIA + GDG Sbjct: 307 LNAGSQWVSHLLQDLVYACLTDPEYQHRLAQTRLFYTTRQQKLARALQQYGIAISP-GDG 365 Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180 +N W+ L QA A ++A+ GWL+R GEAF V HGLRITLS L LAAD+ Sbjct: 366 VNAWLPLDTHSQATAFTLAKSGWLVREGEAFGVSAPSHGLRITLSTLNDSEINTLAADIH 425 Query: 181 RSLS 184 ++L+ Sbjct: 426 QALN 429