BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0008.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773917.1| TetR family transcription regulator protein ... 419 e-115 ref|YP_004751496.1| putative TetR family transcriptional regulat... 266 2e-69 ref|ZP_08274992.1| Transcriptional regulator, TetR family [Oxalo... 236 1e-60 gb|ABK64055.1| putative tetR family regulatory protein [Janthino... 231 5e-59 ref|ZP_07675546.1| transcriptional regulator, TetR family [Ralst... 230 9e-59 ref|YP_001898231.1| TetR family transcriptional regulator [Ralst... 229 2e-58 ref|YP_002006350.1| TetR family transcriptional regulator [Cupri... 229 2e-58 ref|YP_002980584.1| TetR family transcriptional regulator [Ralst... 229 2e-58 ref|YP_004686606.1| TetR family transcriptional regulator [Cupri... 228 6e-58 ref|YP_727318.1| TetR/AcrR family transcriptional regulator [Ral... 227 1e-57 >ref|YP_003773917.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62009.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 209 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 208/209 (99%), Positives = 208/209 (99%) Query: 1 MSASAKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSK 60 MSASAKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSK Sbjct: 1 MSASAKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSK 60 Query: 61 ESLFKSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAE 120 ESLFKSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAE Sbjct: 61 ESLFKSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAE 120 Query: 121 SGNFPELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQ 180 SGNFPELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQ Sbjct: 121 SGNFPELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQ 180 Query: 181 SLAPCAIAPIDSDAYLASLIDLCVHGLKA 209 SLAPCAIAPIDS AYLASLIDLCVHGLKA Sbjct: 181 SLAPCAIAPIDSAAYLASLIDLCVHGLKA 209 >ref|YP_004751496.1| putative TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60673.1| putative transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 212 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 123/203 (60%), Positives = 158/203 (77%) Query: 5 AKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLF 64 + +PRW RRK+ RPQELLAAAL LFVERG+AATRL DVAA AGVSKGTLYLYF+SKE LF Sbjct: 6 SSKPRWARRKEARPQELLAAALDLFVERGFAATRLGDVAALAGVSKGTLYLYFESKEDLF 65 Query: 65 KSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNF 124 K+VVR ++LP L EAE +D + G +ADL RE++LGWW+ + L GI KL++AESGNF Sbjct: 66 KAVVRENILPALAEAEDIIDGYQGPSADLFREILLGWWEQIGATKLSGITKLLMAESGNF 125 Query: 125 PELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAP 184 PELA F+ EE++ R +A +VR+L+RG+ RGEFR +D V+ AP++MLM+W Q L P Sbjct: 126 PELAAFHREEVSERSEAMIVRLLQRGIERGEFRAIDVRQTANVLIAPVIMLMMWQQPLNP 185 Query: 185 CAIAPIDSDAYLASLIDLCVHGL 207 C + P+D+ +YL S IDLC+HGL Sbjct: 186 CHVEPVDAGSYLDSFIDLCLHGL 208 >ref|ZP_08274992.1| Transcriptional regulator, TetR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF31536.1| Transcriptional regulator, TetR family [Oxalobacteraceae bacterium IMCC9480] Length = 222 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 121/201 (60%), Positives = 152/201 (75%), Gaps = 1/201 (0%) Query: 8 PRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSV 67 PRW RRK+ RPQELL AAL LFVERG++ATRL+DVA AGVSKGTLYLY+ SKE LFK+V Sbjct: 10 PRWTRRKEARPQELLDAALALFVERGFSATRLDDVARIAGVSKGTLYLYYASKEELFKAV 69 Query: 68 VRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPEL 127 VR +++PLL EAEA + H G +A LLR+++LGWW+ + L GI KL++AE+ NFPEL Sbjct: 70 VRENVVPLLGEAEAMIRDHAGSSALLLRQILLGWWERIGETRLSGITKLVMAEARNFPEL 129 Query: 128 ARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSL-APCA 186 A+FY+EE+ RG+A L +VLERG+A GEFRPLD VIAAPIMM+M+W S +PCA Sbjct: 130 AKFYNEEVILRGNAMLAQVLERGVASGEFRPLDITQATSVIAAPIMMMMMWKHSFGSPCA 189 Query: 187 IAPIDSDAYLASLIDLCVHGL 207 + I AYL + DL + GL Sbjct: 190 LPTITPQAYLHGVTDLLLQGL 210 >gb|ABK64055.1| putative tetR family regulatory protein [Janthinobacterium lividum] Length = 216 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 108/203 (53%), Positives = 152/203 (74%) Query: 7 EPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKS 66 +PRWERRK RPQELLAAAL LFVERG+A+TRLEDVA +AGVSKGTLYLYF++K+ LFK+ Sbjct: 8 KPRWERRKDARPQELLAAALDLFVERGFASTRLEDVAKRAGVSKGTLYLYFENKQELFKA 67 Query: 67 VVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPE 126 VVR +++ + EAE + + D +A+LLR++++ WW+ + L G+ KLMLAE+ NFPE Sbjct: 68 VVRDNIVQSIGEAEDSMAASDSSSAELLRKVMMQWWEEFGATKLAGLTKLMLAEANNFPE 127 Query: 127 LARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCA 186 LA+FY+EE+ +RG+ +V +LERGM RGEFR +D + +++AP+ MLM+W S PC Sbjct: 128 LAQFYNEEVVTRGNGLIVSLLERGMQRGEFRQVDPVLVSTILSAPVTMLMMWTHSFLPCE 187 Query: 187 IAPIDSDAYLASLIDLCVHGLKA 209 + ID AY+ + ID+ + L+ Sbjct: 188 VKNIDPLAYMDAFIDMSLRSLQV 210 >ref|ZP_07675546.1| transcriptional regulator, TetR family [Ralstonia sp. 5_7_47FAA] gb|EFP66143.1| transcriptional regulator, TetR family [Ralstonia sp. 5_7_47FAA] Length = 255 Score = 230 bits (587), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 106/199 (53%), Positives = 145/199 (72%) Query: 9 RWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVV 68 RW RRK+ RPQEL+AAAL LFV RGYAATRLEDVA+ AGVSKGT+YLYF +KE LFK+VV Sbjct: 20 RWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVV 79 Query: 69 RAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPELA 128 + +++P L E EA +DS DG + LL E+++GWW+ S G+ KL++AESGNFP+LA Sbjct: 80 QENLVPALAEGEALIDSFDGTSEALLHEILIGWWELIGESPASGLTKLLMAESGNFPDLA 139 Query: 129 RFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAIA 188 ++YHEE+ R D R+LERGMARGEFR ++ + AP++ LM+W S PC+ Sbjct: 140 QYYHEEVIDRCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMMWKHSFGPCSHR 199 Query: 189 PIDSDAYLASLIDLCVHGL 207 ++ A++A ++ L +HG+ Sbjct: 200 ELEPKAFIAHVVSLLLHGV 218 >ref|YP_001898231.1| TetR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD25799.1| transcriptional regulator, TetR family [Ralstonia pickettii 12J] Length = 247 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 105/199 (52%), Positives = 144/199 (72%) Query: 9 RWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVV 68 RW RRK+ RPQEL+AAAL LFV RGYAATRLEDVA+ AGVSKGT+YLYF +KE LFK+VV Sbjct: 12 RWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVV 71 Query: 69 RAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPELA 128 + +++P L E EA +DS DG + LL E+++GWW+ S G+ KL++AESGNFP+LA Sbjct: 72 QENLVPALAEGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLLMAESGNFPDLA 131 Query: 129 RFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAIA 188 ++YHEE+ R D R+LERGMARGEFR ++ + AP++ LM+W S PC+ Sbjct: 132 QYYHEEVIERCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMMWKHSFGPCSHR 191 Query: 189 PIDSDAYLASLIDLCVHGL 207 ++ A++ ++ L +HG+ Sbjct: 192 ELEPKAFITHVVSLLLHGV 210 >ref|YP_002006350.1| TetR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ70287.1| putative TRANSCRIPTIONal REGULATOR PROTEIN, TetR/AcrR-family [Cupriavidus taiwanensis LMG 19424] Length = 274 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 146/205 (71%) Query: 5 AKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLF 64 A PRW RRK RPQEL+AAAL LFVERGYAATRLEDVAA AGVSKGT+YLYF +KE LF Sbjct: 21 ADSPRWSRRKAARPQELVAAALDLFVERGYAATRLEDVAAAAGVSKGTVYLYFANKEELF 80 Query: 65 KSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNF 124 KSVVR +++P L VD++ G T +LLREL+ GWW + + G+ KL++AES NF Sbjct: 81 KSVVRENLVPALARGADLVDAYQGSTPELLRELLRGWWGLIGATPVAGLTKLIMAESANF 140 Query: 125 PELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAP 184 P++ARFY++E+ GD +VL RG+ARGEFRPL A+ +I AP++ LM+W ++L Sbjct: 141 PDIARFYNQEVMVPGDELFAKVLARGVARGEFRPLPANPTTTLICAPLVFLMMWQRALRA 200 Query: 185 CAIAPIDSDAYLASLIDLCVHGLKA 209 A ID +A+L L+D + GL A Sbjct: 201 TAEKDIDPEAFLDGLLDTLLFGLTA 225 >ref|YP_002980584.1| TetR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS61912.1| transcriptional regulator, TetR family [Ralstonia pickettii 12D] Length = 255 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 105/199 (52%), Positives = 144/199 (72%) Query: 9 RWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVV 68 RW RRK+ RPQEL+AAAL LFV RGYAATRLEDVA+ AGVSKGT+YLYF +KE LFK+VV Sbjct: 20 RWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVV 79 Query: 69 RAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPELA 128 + +++P L E EA +DS DG + LL E+++GWW+ S G+ KL++AESGNFP+LA Sbjct: 80 QENLVPALAEGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLLMAESGNFPDLA 139 Query: 129 RFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAIA 188 ++YHEE+ R D R+LERGMARGEFR ++ + AP++ LM+W S PC+ Sbjct: 140 QYYHEEVIDRCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMMWKHSFGPCSHR 199 Query: 189 PIDSDAYLASLIDLCVHGL 207 ++ ++A ++ L +HG+ Sbjct: 200 ELEPKTFIAHVVSLLLHGV 218 >ref|YP_004686606.1| TetR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI78125.1| transcriptional regulator TetR/AcrR family [Cupriavidus necator N-1] Length = 271 Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 111/203 (54%), Positives = 146/203 (71%) Query: 5 AKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLF 64 A PRW RRK RPQEL+AAAL LFVERGYAATRLEDVAA AGVSKGT+YLYF +KE LF Sbjct: 20 ADTPRWSRRKAARPQELVAAALDLFVERGYAATRLEDVAAAAGVSKGTVYLYFANKEELF 79 Query: 65 KSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNF 124 KSVVRA+++P L VD++DG T +LLREL+ GWW + + G+ KL++AES NF Sbjct: 80 KSVVRANLVPALARGSDLVDAYDGSTPELLRELLRGWWGLIGATPVAGLTKLIMAESANF 139 Query: 125 PELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAP 184 P++ARFY++E+ GD +VL RG+ARGEFR + A+ ++ AP++ LMLW ++L Sbjct: 140 PDIARFYNQEVMVPGDELFAKVLARGVARGEFRAMPANPTTTLVCAPLVFLMLWQRALRA 199 Query: 185 CAIAPIDSDAYLASLIDLCVHGL 207 A I+ +A+L L+D + GL Sbjct: 200 TAEKDINPEAFLDGLLDTLLFGL 222 >ref|YP_727318.1| TetR/AcrR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ93950.1| transcriptional regulator, TetR/AcrR-family [Ralstonia eutropha H16] Length = 271 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/203 (54%), Positives = 145/203 (71%) Query: 5 AKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLF 64 A PRW RRK RPQEL+AAAL LFVERGYAATRLEDVAA AGVSKGT+YLYF +KE LF Sbjct: 20 ADTPRWSRRKAARPQELVAAALDLFVERGYAATRLEDVAAAAGVSKGTVYLYFANKEELF 79 Query: 65 KSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNF 124 KSVVR +++P L VD++DG T +LLREL+ GWW + + G+ KL++AES NF Sbjct: 80 KSVVRENLVPALARGSDLVDAYDGSTPELLRELLRGWWGLIGATPVAGLTKLIMAESANF 139 Query: 125 PELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAP 184 P++ARFY++E+ GD +VL RG+ARGEFR + A+ ++ AP++ LMLW ++L Sbjct: 140 PDIARFYNQEVMMPGDELFAKVLARGVARGEFRAMPANPTTTLVCAPLVFLMLWQRALRA 199 Query: 185 CAIAPIDSDAYLASLIDLCVHGL 207 A ID +A+L L+D + GL Sbjct: 200 TAEKDIDPEAFLDGLLDTLLFGL 222