BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0004.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773913.1| transcription regulator protein [Herbaspiril... 435 e-120 ref|YP_001354625.1| TetR/AcrR family transcriptional regulator [... 258 4e-67 ref|YP_004751492.1| transcriptional repressor for multidrug effl... 242 3e-62 ref|ZP_08273881.1| Transcription repressor of multidrug efflux p... 225 3e-57 ref|YP_002983357.1| TetR family transcriptional regulator [Ralst... 224 6e-57 ref|YP_001901294.1| TetR family transcriptional regulator [Ralst... 223 2e-56 ref|NP_518133.1| AcrAB operon repressor transcription regulator ... 219 2e-55 emb|CBJ39646.1| transcriptional repressor for acridine efflux pu... 219 2e-55 ref|YP_003753976.1| TetR family transcriptional regulator [Ralst... 219 2e-55 ref|YP_002007164.1| TetR family transcriptional regulator [Cupri... 219 2e-55 >ref|YP_003773913.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62005.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 211 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/211 (100%), Positives = 211/211 (100%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD Sbjct: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA Sbjct: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF Sbjct: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQRR 211 SPDSFDLVSEGERVLAASMHALKTAPSLQRR Sbjct: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQRR 211 >ref|YP_001354625.1| TetR/AcrR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90501.1| TetR/AcrR family transcriptional regulator, acrAB operon repressor [Janthinobacterium sp. Marseille] Length = 213 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 127/211 (60%), Positives = 155/211 (73%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MARSTKEEALETR+RILDAAE+VF RG++Q+SLADVA AA+VTRGAIYWHFKNKSDLF+ Sbjct: 1 MARSTKEEALETRNRILDAAEEVFFTRGLAQSSLADVAVAADVTRGAIYWHFKNKSDLFE 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERVRLPME ++ V DPLG + +++L + R RRV DIIF KCE Sbjct: 61 AMCERVRLPMETMMTTPGEKFVRDPLGHLRHTWIWLLRDVVDNPRSRRVLDIIFLKCELV 120 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 D +DPI +RQRECH +G+ + IL AVA GQLPA LD +LA L H++ GLLTDW F Sbjct: 121 DHNDPIWVRQRECHREGLENMRSILEEAVAMGQLPADLDTQLAVLSLHSSLVGLLTDWLF 180 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQRR 211 SPDSFDL E ++ A + L+ APSL+R+ Sbjct: 181 SPDSFDLKEVVEPLVDACLDGLRNAPSLRRK 211 >ref|YP_004751492.1| transcriptional repressor for multidrug efflux pump (TetR/AcrR family) [Collimonas fungivorans Ter331] gb|AEK60669.1| transcriptional repressor for multidrug efflux pump (TetR/AcrR family) [Collimonas fungivorans Ter331] Length = 213 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/206 (56%), Positives = 145/206 (70%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MARSTKEEALETRSRILDAA +VFH+ GV++T+LADVA AA+VTRGAIYWHFKNKSDLFD Sbjct: 1 MARSTKEEALETRSRILDAAAEVFHQHGVARTTLADVASAADVTRGAIYWHFKNKSDLFD 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERVRLPMEA++E A DPL QF ++ L A + R++F+I+ +KCE Sbjct: 61 AMCERVRLPMEAMIERTADENAHDPLNQFRNRCLFTLQEATLNPESRKIFEIVLHKCELV 120 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 D DPI IRQ EC + G +E++L A+A+GQLP LD LA +M G+L +W F Sbjct: 121 DPEDPIYIRQHECFLQGRTDIERLLRFAIAKGQLPRELDPILAAVMVQGLLFGILHNWTF 180 Query: 181 SPDSFDLVSEGERVLAASMHALKTAP 206 SP SFDL +V+ +H KT+P Sbjct: 181 SPQSFDLAENVSKVVDNCIHMFKTSP 206 >ref|ZP_08273881.1| Transcription repressor of multidrug efflux pump acrAB operon [Oxalobacteraceae bacterium IMCC9480] gb|EGF32646.1| Transcription repressor of multidrug efflux pump acrAB operon [Oxalobacteraceae bacterium IMCC9480] Length = 225 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 116/210 (55%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M+RSTKEEALETRSRILDAAE VFH GV++TSLADVA AA VTRGAIYWHFKNK DLF+ Sbjct: 15 MSRSTKEEALETRSRILDAAENVFHAHGVTRTSLADVATAANVTRGAIYWHFKNKGDLFN 74 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGV-YVLTMAATDERCRRVFDIIFNKCEF 119 AMCER LP+EA++ ++A +PL Q LR+G+ + + + + RRVF++IF+KCE Sbjct: 75 AMCERAHLPLEAMVLQSADHPDREPLDQ-LRAGILFAINDIVHNPQTRRVFEVIFHKCEL 133 Query: 120 ADAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWF 179 D DPI +RQ E D M +E++L A A+GQLPATLD +LA + HA GL+ +W Sbjct: 134 VDVDDPIRVRQHEGFNDCMHNIERLLILACAQGQLPATLDTQLATVSLHAMLEGLINNWL 193 Query: 180 FSPDSFDLVSEGERVLAASMHALKTAPSLQ 209 F+P SFDL + R+L A L+ A SL+ Sbjct: 194 FAPQSFDLGGQSGRLLDACFDMLRCAESLR 223 >ref|YP_002983357.1| TetR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS64685.1| transcriptional regulator, TetR family [Ralstonia pickettii 12D] Length = 223 Score = 224 bits (571), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 113/209 (54%), Positives = 147/209 (70%), Gaps = 1/209 (0%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEDVFYARGVARTSLSDIAQAAGVTRGAIYWHFRNKTDVFA 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERV+LPME + + +DPLG+ G ++L D R+VF+I+FNKCEF Sbjct: 61 AMCERVKLPMETMCTPLGM-EADDPLGELRTVGNFLLRQLVEDAHWRKVFEIMFNKCEFV 119 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 + PIL RQ+E +GM L I+ A RGQLPA LDI LA HATF+G++ D+ F Sbjct: 120 EDTSPILKRQQESFEEGMTHLTSIIEQATRRGQLPADLDIPLAVAHFHATFNGIMGDYLF 179 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQ 209 PD+ L ++ ER+L A + LK APSL+ Sbjct: 180 YPDASSLATKRERLLDACIDTLKYAPSLR 208 >ref|YP_001901294.1| TetR family transcriptional regulator [Ralstonia pickettii 12J] ref|ZP_07674948.1| multidrug efflux pump repressor protein BpeR [Ralstonia sp. 5_7_47FAA] gb|ACD28862.1| transcriptional regulator, TetR family [Ralstonia pickettii 12J] gb|EFP66546.1| multidrug efflux pump repressor protein BpeR [Ralstonia sp. 5_7_47FAA] Length = 223 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/209 (54%), Positives = 146/209 (69%), Gaps = 1/209 (0%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEDVFYARGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERV+LPME + + +DPLG+ G ++L D R+VF+I+FNKCEF Sbjct: 61 AMCERVKLPMETMCTP-LGVEADDPLGELRTVGNFLLRQLVEDAHWRKVFEIMFNKCEFV 119 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 + PIL RQ+E +GM L I+ A RGQLPA LDI LA HATF+G++ D+ F Sbjct: 120 EDTSPILKRQQESFEEGMAHLTSIIEQATRRGQLPADLDIPLAVAHFHATFNGIMGDYLF 179 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQ 209 PD L ++ ER+L A + LK APSL+ Sbjct: 180 YPDVSSLATKRERLLDACIDTLKYAPSLR 208 >ref|NP_518133.1| AcrAB operon repressor transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD13540.1| putative acrab operon repressor transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/212 (52%), Positives = 146/212 (68%), Gaps = 7/212 (3%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE+VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEEVFYVRGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASP---QVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKC 117 AMCERV+LPME + SP + DPLG+ +VL D RRVF+I+FNKC Sbjct: 61 AMCERVKLPMETL----CSPLGVEPNDPLGELRNVANFVLQQLVEDMHWRRVFEIMFNKC 116 Query: 118 EFADAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTD 177 EF + PIL RQ+E +G+ RL I+G A RGQLP LD+ LA HA+F G++ D Sbjct: 117 EFVEDTSPILKRQQESFEEGLARLTHIIGQAARRGQLPPDLDVPLAVAHFHASFGGIMGD 176 Query: 178 WFFSPDSFDLVSEGERVLAASMHALKTAPSLQ 209 + F PD+ L + ER + A + LK +P+L+ Sbjct: 177 YLFYPDASSLAVKRERFVDACIDTLKYSPALR 208 >emb|CBJ39646.1| transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) [Ralstonia solanacearum CMR15] Length = 219 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/212 (52%), Positives = 146/212 (68%), Gaps = 7/212 (3%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE+VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEEVFYVRGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASP---QVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKC 117 AMCERV+LPME + SP + DPLG+ +VL D RRVF+I+FNKC Sbjct: 61 AMCERVKLPMETL----CSPLGVEPNDPLGELRNVANFVLQQLVEDMHWRRVFEIMFNKC 116 Query: 118 EFADAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTD 177 EF + PIL RQ+E +G+ RL I+G A RGQLP LD+ LA HA+F G++ D Sbjct: 117 EFVEDTSPILKRQQESFEEGLARLTHIIGQAARRGQLPPDLDVPLAVAHFHASFGGIMGD 176 Query: 178 WFFSPDSFDLVSEGERVLAASMHALKTAPSLQ 209 + F PD+ L + ER + A + LK +P+L+ Sbjct: 177 YLFYPDASSLAVKRERFVDACIDTLKYSPALR 208 >ref|YP_003753976.1| TetR family transcriptional regulator [Ralstonia solanacearum PSI07] emb|CBJ52715.1| transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) [Ralstonia solanacearum PSI07] emb|CCA80859.1| transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) [blood disease bacterium R229] Length = 219 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/212 (52%), Positives = 146/212 (68%), Gaps = 7/212 (3%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE+VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEEVFYARGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASP---QVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKC 117 AMCERV+LPME + SP + DPLG+ +VL D RRVF+I+FNKC Sbjct: 61 AMCERVKLPMETL----CSPLGVEPNDPLGELRNVANFVLQQLVEDMHWRRVFEIMFNKC 116 Query: 118 EFADAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTD 177 EF + PIL RQ+E +G+ RL I+G A RGQLP LD+ LA HA+F G++ D Sbjct: 117 EFVEDTSPILKRQQESFEEGLGRLTHIIGQAARRGQLPPDLDVPLAVAHFHASFGGIMGD 176 Query: 178 WFFSPDSFDLVSEGERVLAASMHALKTAPSLQ 209 + F PD+ L + ER + A + LK +P+L+ Sbjct: 177 YLFYPDASSLAVKRERFVDACIDTLKYSPALR 208 >ref|YP_002007164.1| TetR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ71103.1| transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) [Cupriavidus taiwanensis LMG 19424] Length = 247 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/209 (53%), Positives = 142/209 (67%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR RILDAAE VFH RGV++ SLAD+A+AA VTRGAIYWHFKNKSD+F Sbjct: 1 MVRRTKEEALETRHRILDAAEAVFHARGVARPSLADIAEAAGVTRGAIYWHFKNKSDVFA 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMC+RV LP+EA++E + EDPLG YV+ + R RRVF+IIF+KCE Sbjct: 61 AMCDRVHLPVEALIEPERLARQEDPLGGIRDICAYVMRQTVINPRWRRVFEIIFHKCEMV 120 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 + I RQR+ H DG++++ + L AV RGQLPA LD+ LA HA G+L W F Sbjct: 121 QDNGAIFERQRQSHQDGLVKMREHLRLAVERGQLPADLDLDLAVNAFHAAVGGVLAHWLF 180 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQ 209 SP F+L + ER+ A + LK +P+L+ Sbjct: 181 SPQDFNLDANAERLSDAFIDTLKFSPALR 209