BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0002.p (162 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776856.1| SOS mutagenesis and repair protein [Herbaspi... 320 4e-86 ref|XP_002535990.1| uv inducible DNA polymerase umuc / mucb, put... 207 6e-52 ref|YP_004295494.1| DNA-directed DNA polymerase [Nitrosomonas sp... 203 7e-51 ref|YP_001155487.1| DNA-directed DNA polymerase [Polynucleobacte... 199 1e-49 ref|YP_004694947.1| UMUC domain-containing protein DNA-repair pr... 197 3e-49 ref|YP_004695473.1| UMUC domain-containing protein DNA-repair pr... 196 7e-49 ref|YP_003848167.1| DNA-directed DNA polymerase [Gallionella cap... 195 2e-48 ref|YP_004693629.1| UMUC domain-containing protein DNA-repair pr... 194 4e-48 ref|YP_003051379.1| DNA-directed DNA polymerase [Methylovorus gl... 191 3e-47 ref|YP_003846438.1| DNA-directed DNA polymerase [Gallionella cap... 190 6e-47 >ref|YP_003776856.1| SOS mutagenesis and repair protein [Herbaspirillum seropedicae SmR1] gb|ADJ64948.1| SOS mutagenesis and repair protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 320 bits (821), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 154/162 (95%), Positives = 158/162 (97%) Query: 1 VSNQPPSQARRAGFALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALG 60 +S+Q PSQARRAGFALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGC VA SNEAKALG Sbjct: 1 MSSQRPSQARRAGFALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCTVARSNEAKALG 60 Query: 61 IKMAAPWFMMQELARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALD 120 IKMAAPWFMMQELARQHGIVALSSNYTLYADMSNRVT+VLRQYSPRLEVYSIDESFLALD Sbjct: 61 IKMAAPWFMMQELARQHGIVALSSNYTLYADMSNRVTEVLRQYSPRLEVYSIDESFLALD 120 Query: 121 GLAGLWPSMSDMGQAIRHQVLTWVGVPVCVGMGATKKVIPTK 162 GLAGLWPSMSDMGQAIRHQVLTWVGVPVCVG+ ATKKVIPTK Sbjct: 121 GLAGLWPSMSDMGQAIRHQVLTWVGVPVCVGIWATKKVIPTK 162 >ref|XP_002535990.1| uv inducible DNA polymerase umuc / mucb, putative [Ricinus communis] gb|EEF26393.1| uv inducible DNA polymerase umuc / mucb, putative [Ricinus communis] Length = 360 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 101/152 (66%), Positives = 118/152 (77%), Gaps = 3/152 (1%) Query: 7 SQARRAGFALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAP 66 + A+RA ALVDVNNFYVSCERVF+PKLR RPVVVLSNNDGCAVA SNE KALG+ M AP Sbjct: 7 ATAQRA-IALVDVNNFYVSCERVFNPKLRNRPVVVLSNNDGCAVARSNEVKALGVPMGAP 65 Query: 67 WFMMQELARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLW 126 WF ++LA+QHGI+A SSNY LYADMSNRV +LRQ+SP EVYSIDE FL L G A Sbjct: 66 WFKFKDLAKQHGIIAYSSNYALYADMSNRVMSILRQFSPNQEVYSIDECFLDLTGFARR- 124 Query: 127 PSMSDMGQAIRHQVLTWVGVPVCVGMGATKKV 158 + GQ IR ++L W G+PVCVG+ +TK + Sbjct: 125 -DLVVYGQDIRKRILQWTGLPVCVGIASTKTL 155 >ref|YP_004295494.1| DNA-directed DNA polymerase [Nitrosomonas sp. AL212] gb|ADZ27332.1| DNA-directed DNA polymerase [Nitrosomonas sp. AL212] Length = 431 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 92/145 (63%), Positives = 113/145 (77%), Gaps = 2/145 (1%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 AL+DVNNFYVSCERVF+PKL +PVVVLSNNDGCAVA SNEAKALG++M PWF +++L Sbjct: 8 IALIDVNNFYVSCERVFNPKLEDKPVVVLSNNDGCAVARSNEAKALGVRMGQPWFQLKDL 67 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 AR+HGI+A SSNY LYADMSNRV +LR +SP E+YSIDE FL L G ++ G Sbjct: 68 ARRHGIIAYSSNYALYADMSNRVMSILRMFSPDQEIYSIDECFLDLTGFKT--KNLVRYG 125 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 Q IR ++ W G+PVCVG+G+TK + Sbjct: 126 QQIRQRIKQWTGLPVCVGIGSTKTL 150 >ref|YP_001155487.1| DNA-directed DNA polymerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP33923.1| DNA-directed DNA polymerase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 450 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 91/145 (62%), Positives = 113/145 (77%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 FALVDVNNFYVSCERVF PKL P+VVLSNNDGCAVA S E KALGIK PWF MQEL Sbjct: 28 FALVDVNNFYVSCERVFQPKLEDVPMVVLSNNDGCAVARSAEVKALGIKTGTPWFQMQEL 87 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 A++HGI A SSNYTLY DMS+RV +VLR ++P LEVYSIDESFL ++ + + ++G Sbjct: 88 AKKHGIQAYSSNYTLYGDMSSRVVEVLRAFTPNLEVYSIDESFLQIETVLKQYQDTVELG 147 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 ++++ +V G+PVCVG+GA+K + Sbjct: 148 RSMKEKVRDTTGLPVCVGIGASKTL 172 >ref|YP_004694947.1| UMUC domain-containing protein DNA-repair protein [Nitrosomonas sp. Is79A3] gb|AEJ01548.1| UMUC domain protein DNA-repair protein [Nitrosomonas sp. Is79A3] Length = 465 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 94/151 (62%), Positives = 115/151 (76%), Gaps = 3/151 (1%) Query: 8 QARRAGFALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPW 67 Q RA ALVD NNFYVSCERVF+P+L RPVVVLSNNDGCAVA SNE KALG+KM PW Sbjct: 39 QVTRA-IALVDCNNFYVSCERVFNPQLEGRPVVVLSNNDGCAVARSNEVKALGVKMGQPW 97 Query: 68 FMMQELARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWP 127 F +++LA++HGIVA SSNY LYADMSNRV +L +SP+ E+YSIDE FL L G Sbjct: 98 FQLKDLAKEHGIVAHSSNYALYADMSNRVMSLLSAFSPQQEIYSIDECFLDLSGFKT--R 155 Query: 128 SMSDMGQAIRHQVLTWVGVPVCVGMGATKKV 158 +++ GQ IR +V W G+PVC+G+G+TK + Sbjct: 156 NLTLYGQQIRQRVKQWTGLPVCIGIGSTKTL 186 >ref|YP_004695473.1| UMUC domain-containing protein DNA-repair protein [Nitrosomonas sp. Is79A3] gb|AEJ02074.1| UMUC domain protein DNA-repair protein [Nitrosomonas sp. Is79A3] Length = 430 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 91/143 (63%), Positives = 110/143 (76%), Gaps = 2/143 (1%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 AL+DVNNFYVSCERVF+PKL +PVVVLSNNDGCAVA SNE KALG+KM PWF +++L Sbjct: 8 IALIDVNNFYVSCERVFNPKLEDKPVVVLSNNDGCAVARSNEVKALGVKMGQPWFQLKDL 67 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 A++HGI+ SSNYTLYADMSNRV +L +SP E+YSIDE FL L G ++ G Sbjct: 68 AKKHGIIVYSSNYTLYADMSNRVMSILAVFSPNQEIYSIDECFLDLTGFKR--HNLICYG 125 Query: 134 QAIRHQVLTWVGVPVCVGMGATK 156 Q IR +V W G+PVCVG+G+TK Sbjct: 126 QHIRQRVKQWTGLPVCVGIGSTK 148 >ref|YP_003848167.1| DNA-directed DNA polymerase [Gallionella capsiferriformans ES-2] gb|ADL56403.1| DNA-directed DNA polymerase [Gallionella capsiferriformans ES-2] Length = 424 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 93/146 (63%), Positives = 111/146 (76%), Gaps = 4/146 (2%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 ALVD NNFYVSCERVF+P+L +PVVVLSNNDGCAVA SNE KALG+KMA PWF M++L Sbjct: 3 IALVDCNNFYVSCERVFNPQLEDKPVVVLSNNDGCAVARSNEVKALGVKMAEPWFKMEKL 62 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWP-SMSDM 132 A+QHGI+ALSSNYTLY D+S RV +L +SP+ E+YSIDE FL LAG P S+ Sbjct: 63 AKQHGIIALSSNYTLYGDLSARVMSILSTFSPKQEIYSIDECFL---DLAGFDPKSLIGY 119 Query: 133 GQAIRHQVLTWVGVPVCVGMGATKKV 158 GQ IR + VG+PVCVG+ TK + Sbjct: 120 GQTIRKTIRQQVGIPVCVGIAETKTL 145 >ref|YP_004693629.1| UMUC domain-containing protein DNA-repair protein [Nitrosomonas sp. Is79A3] gb|AEJ00230.1| UMUC domain protein DNA-repair protein [Nitrosomonas sp. Is79A3] Length = 430 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 89/145 (61%), Positives = 109/145 (75%), Gaps = 2/145 (1%) Query: 14 FALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQEL 73 AL+DVNNFYVSCERVF+PKL +PVVVLSNNDGCAVA SNE K LG+KM PWF +++L Sbjct: 8 IALIDVNNFYVSCERVFNPKLEDKPVVVLSNNDGCAVARSNEVKTLGVKMGQPWFQLKDL 67 Query: 74 ARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDMG 133 A++HGI+A SSNY LYADMSNRV +L +SP E+YSIDE FL L G + G Sbjct: 68 AQKHGIIAYSSNYVLYADMSNRVMSILSMFSPNQEIYSIDECFLDLTGFRK--QNQILYG 125 Query: 134 QAIRHQVLTWVGVPVCVGMGATKKV 158 Q IR ++ W G+PVCVG+G+TK + Sbjct: 126 QHIRQRIKQWTGLPVCVGIGSTKTL 150 >ref|YP_003051379.1| DNA-directed DNA polymerase [Methylovorus glucosetrophus SIP3-4] gb|ACT50852.1| DNA-directed DNA polymerase [Methylovorus glucosetrophus SIP3-4] Length = 424 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 89/148 (60%), Positives = 112/148 (75%), Gaps = 3/148 (2%) Query: 11 RAGFALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMM 70 + AL+DVNNFY SCERVF+P L+ R VVVLSNNDGC VA S EAKALGIKM PWF + Sbjct: 2 KRAIALIDVNNFYASCERVFNPALKDRVVVVLSNNDGCVVARSAEAKALGIKMGVPWFQL 61 Query: 71 QELARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMS 130 ++ AR++ I+ALSSNY LYADMSNRV +++ QY+P EVYSIDESFL L G+ G + Sbjct: 62 KDEARRYKILALSSNYALYADMSNRVMKIISQYAPTQEVYSIDESFLDLTGMPG---RHA 118 Query: 131 DMGQAIRHQVLTWVGVPVCVGMGATKKV 158 D+ Q +R Q+ W G+PVCVG+G +K + Sbjct: 119 DIAQKMRGQIRQWTGLPVCVGIGPSKTL 146 >ref|YP_003846438.1| DNA-directed DNA polymerase [Gallionella capsiferriformans ES-2] gb|ADL54674.1| DNA-directed DNA polymerase [Gallionella capsiferriformans ES-2] Length = 425 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 88/146 (60%), Positives = 110/146 (75%), Gaps = 4/146 (2%) Query: 13 GFALVDVNNFYVSCERVFDPKLRARPVVVLSNNDGCAVAHSNEAKALGIKMAAPWFMMQE 72 ALVD NNFYVSCER+F P L +PVV+LSNNDGC V+ S E K LGI MAAPWF ++E Sbjct: 4 AIALVDCNNFYVSCERLFQPALEGKPVVILSNNDGCVVSRSQEVKNLGIAMAAPWFKLKE 63 Query: 73 LARQHGIVALSSNYTLYADMSNRVTQVLRQYSPRLEVYSIDESFLALDGLAGLWPSMSDM 132 LA+QHGI+ALSSNYTLYAD+SNRV +VL Q+SP EVYSIDE FL + G+ ++ Sbjct: 64 LAKQHGIIALSSNYTLYADLSNRVMRVLAQFSPDQEVYSIDECFLDVTGI----DELTRY 119 Query: 133 GQAIRHQVLTWVGVPVCVGMGATKKV 158 Q++R +V VG+PVCVG+ A+K + Sbjct: 120 AQSMRQRVKQHVGIPVCVGIAASKTL 145