BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0001.p (127 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776857.1| SOS mutagenesis protein [Herbaspirillum sero... 257 4e-67 ref|YP_001155486.1| putative prophage repressor [Polynucleobacte... 143 8e-33 ref|ZP_08274548.1| DNA repair protein [Oxalobacteraceae bacteriu... 134 6e-30 ref|YP_003156719.1| peptidase S24 and S26 domain-containing prot... 123 1e-26 ref|YP_004846899.1| peptidase S24 and S26 domain containing prot... 118 4e-25 ref|YP_004120149.1| peptidase S24/S26A/S26B [Desulfovibrio aespo... 115 2e-24 ref|ZP_05291546.1| Error-prone repair protein UmuD [Acidithiobac... 114 5e-24 ref|YP_003848168.1| Peptidase S24/S26A/S26B, conserved region [G... 113 8e-24 ref|YP_743755.1| putative prophage repressor [Nitrosomonas eutro... 111 4e-23 ref|YP_004783249.1| peptidase S24/S26A/S26B [Acidithiobacillus f... 110 9e-23 >ref|YP_003776857.1| SOS mutagenesis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64949.1| SOS mutagenesis protein [Herbaspirillum seropedicae SmR1] Length = 141 Score = 257 bits (657), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 126/127 (99%), Positives = 126/127 (99%) Query: 1 LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVV 60 LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVV Sbjct: 15 LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVV 74 Query: 61 VDRSVSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVV 120 VDRSVSPQPGHIVVAIVN EFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVV Sbjct: 75 VDRSVSPQPGHIVVAIVNGEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVV 134 Query: 121 GVARKML 127 GVARKML Sbjct: 135 GVARKML 141 >ref|YP_001155486.1| putative prophage repressor [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP33922.1| SOS response UmuD protein, Serine peptidase, MEROPS family S24 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 163 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 69/121 (57%), Positives = 88/121 (72%) Query: 5 ITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRS 64 ++H++ AGFPSPAADY D LDLN YLV TF+F V G SM GA I +GDKVVVD++ Sbjct: 33 LSHRISAGFPSPAADYAEDGLDLNHYLVQNKPATFMFTVKGDSMLGAGICDGDKVVVDKA 92 Query: 65 VSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVAR 124 + P+ IVVA+V++E+TIKRL + G EL PENP F PI F +G L+++GVVVGV R Sbjct: 93 LKPKHKDIVVAVVDSEYTIKRLYQLRGRIELQPENPHFEPITFNEGSELQIWGVVVGVVR 152 Query: 125 K 125 K Sbjct: 153 K 153 >ref|ZP_08274548.1| DNA repair protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF31972.1| DNA repair protein [Oxalobacteraceae bacterium IMCC9480] Length = 138 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 68/116 (58%), Positives = 82/116 (70%) Query: 7 HKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVS 66 ++ AGFPSPA +Y LDLNQYLV TF F V G SM GA I +GD VVVDRS+S Sbjct: 17 QRISAGFPSPAEEYLEKGLDLNQYLVRNKTATFYFRVQGDSMVGARIFDGDMVVVDRSLS 76 Query: 67 PQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGV 122 P+ IV+A+VNA++TIKRL G EL ENP + PI+FGDGE LE++GVVVGV Sbjct: 77 PKHRSIVLAVVNADYTIKRLHKRAGVIELRAENPRYAPIQFGDGETLEIWGVVVGV 132 >ref|YP_003156719.1| peptidase S24 and S26 domain-containing protein [Desulfomicrobium baculatum DSM 4028] gb|ACU88303.1| peptidase S24 and S26 domain protein [Desulfomicrobium baculatum DSM 4028] Length = 153 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/119 (52%), Positives = 81/119 (68%) Query: 8 KLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSP 67 ++ AGFPSPA DY LDLN YL+ A TF+ V+G SM+GA I +GD +VVDRS P Sbjct: 35 RISAGFPSPADDYIETALDLNTYLIRNPAATFMVRVSGDSMTGAGISDGDVLVVDRSEQP 94 Query: 68 QPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126 G IVVA+++ E T+KRL + NG L PENP ++PI +G+ L V+GVV GV RK+ Sbjct: 95 AHGKIVVAVLDGELTVKRLVMKNGQTLLAPENPCYQPITVTEGQDLHVWGVVTGVVRKL 153 >ref|YP_004846899.1| peptidase S24 and S26 domain containing protein [Pseudogulbenkiania sp. NH8B] ref|YP_004847328.1| peptidase S24 and S26 domain containing protein [Pseudogulbenkiania sp. NH8B] dbj|BAK76485.1| peptidase S24 and S26 domain protein [Pseudogulbenkiania sp. NH8B] dbj|BAK76914.1| peptidase S24 and S26 domain protein [Pseudogulbenkiania sp. NH8B] Length = 142 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/120 (50%), Positives = 80/120 (66%) Query: 8 KLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSP 67 ++ AGFPSPA DY LDLNQYL++ A TF+ V+G SM GA I +GD +VVDRS+ P Sbjct: 23 RVPAGFPSPADDYLETALDLNQYLIEDAAATFMVRVSGDSMLGAGISDGDVLVVDRSIPP 82 Query: 68 QPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKML 127 G IV+A V+ EFT+KRL + L PENP + PI +G+ L+V+GVV G +K L Sbjct: 83 AHGQIVLAAVDGEFTVKRLHKRSDRVALLPENPAYPPIELHNGQELQVWGVVTGCIKKFL 142 >ref|YP_004120149.1| peptidase S24/S26A/S26B [Desulfovibrio aespoeensis Aspo-2] gb|ADU61403.1| Peptidase S24/S26A/S26B, conserved region [Desulfovibrio aespoeensis Aspo-2] Length = 156 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/116 (50%), Positives = 74/116 (63%) Query: 11 AGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQPG 70 AGFPSPA DY LDLN+YL R TF VAG SM+GA I GD +VVDRSV+P PG Sbjct: 41 AGFPSPAEDYIEKTLDLNEYLAPRPEATFFVRVAGDSMTGASIHHGDILVVDRSVTPNPG 100 Query: 71 HIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126 ++V+A ++ FT+KRL+ G EL PENPD+ P E++GVV V K+ Sbjct: 101 NVVIACIDGGFTVKRLQRTAGGLELAPENPDYAPTPITPDTDFEIWGVVRHVLHKL 156 >ref|ZP_05291546.1| Error-prone repair protein UmuD [Acidithiobacillus caldus ATCC 51756] gb|EET28573.1| Error-prone repair protein UmuD [Acidithiobacillus caldus ATCC 51756] Length = 158 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 55/122 (45%), Positives = 79/122 (64%) Query: 5 ITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRS 64 + ++ AGFPSPA DY +DLN +L+ TF+ V GWSM A I +GD+++VDR+ Sbjct: 37 MVSRIAAGFPSPADDYVEKQIDLNAHLILHKEATFILRVTGWSMRDAGIFDGDEILVDRA 96 Query: 65 VSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVAR 124 ++P G IVVA +N + T+KRLR + GA L ENP+F PI +GE L ++GVV V Sbjct: 97 ITPTDGRIVVAAINGDLTVKRLRRIGGAVHLVAENPEFPPIVLHEGEELCIWGVVTRVLH 156 Query: 125 KM 126 ++ Sbjct: 157 RV 158 >ref|YP_003848168.1| Peptidase S24/S26A/S26B, conserved region [Gallionella capsiferriformans ES-2] gb|ADL56404.1| Peptidase S24/S26A/S26B, conserved region [Gallionella capsiferriformans ES-2] Length = 146 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 59/127 (46%), Positives = 80/127 (62%) Query: 1 LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVV 60 LA +HK+ AGFPSPA DY L L+Q+L+ TF G SM GA I +GD +V Sbjct: 20 LAPLFSHKVPAGFPSPADDYIEGRLSLDQHLIQHKDATFFVRAKGNSMVGAGIFDGDLLV 79 Query: 61 VDRSVSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVV 120 VDRS++P G IV+A+++AE T+KRL +G L PENPDF I +G+ L+V+GVV Sbjct: 80 VDRSLNPSSGDIVIAVLDAELTVKRLIRRDGMVILKPENPDFSEIVLKEGQELQVWGVVT 139 Query: 121 GVARKML 127 +K + Sbjct: 140 STTKKFI 146 >ref|YP_743755.1| putative prophage repressor [Nitrosomonas eutropha C91] gb|ABI60777.1| UmuD protein. Serine peptidase. MEROPS family S24 [Nitrosomonas eutropha C91] Length = 147 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 55/117 (47%), Positives = 77/117 (65%) Query: 9 LHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSPQ 68 + AGFPSPA D+ +DL+ L+ TFL + G SM+ A I +GD VVVD++V P+ Sbjct: 30 VRAGFPSPADDFLLKRIDLSNELIKHPEATFLMRIKGHSMTMAGIDDGDIVVVDKAVKPE 89 Query: 69 PGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARK 125 G IV+A V+ EFT KRL L++G L P NPD++ I F DG++LEV+GVV ++ Sbjct: 90 HGKIVIACVDGEFTCKRLYLLDGETRLQPANPDYKDIIFKDGQILEVWGVVTSCIKQ 146 >ref|YP_004783249.1| peptidase S24/S26A/S26B [Acidithiobacillus ferrivorans SS3] gb|AEM46923.1| Peptidase S24/S26A/S26B, conserved region [Acidithiobacillus ferrivorans SS3] Length = 159 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 53/119 (44%), Positives = 76/119 (63%) Query: 8 KLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVVVDRSVSP 67 ++ AGFPSPA DY +DLN +L+ TF+ V GWSM A I +GD+++VDR+++P Sbjct: 41 RIAAGFPSPADDYVEKQIDLNTHLIQHREATFILRVTGWSMRDAGIFDGDEIIVDRAITP 100 Query: 68 QPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVVGVARKM 126 G IVVA +N + T+KRLR + A L ENP+F I +GE L ++GVV V ++ Sbjct: 101 VDGKIVVAAINGDLTVKRLRRIGSAVHLVAENPEFPAIILKEGEELCIWGVVTRVLHRV 159