BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0009.p (485 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777335.1| amino acid permease family protein [Herbaspi... 957 0.0 ref|ZP_07774432.1| basic helix-loop-helix dimerization domain bH... 647 0.0 ref|YP_002872669.1| putative amino acid permease [Pseudomonas fl... 645 0.0 ref|YP_004354364.1| amino acid permease [Pseudomonas brassicacea... 642 0.0 ref|YP_004353621.1| amino acid transporter membrane protein [Pse... 635 e-180 ref|YP_002872672.1| putative transmembrane permease [Pseudomonas... 632 e-179 ref|YP_004227365.1| amino acid permease-associated protein [Burk... 511 e-143 ref|YP_004234208.1| amino acid permease-associated region [Acido... 465 e-129 ref|YP_004139909.1| amino acid permease-associated protein [Meso... 450 e-124 ref|YP_004609290.1| amino acid/polyamine/organocation transporte... 450 e-124 >ref|YP_003777335.1| amino acid permease family protein [Herbaspirillum seropedicae SmR1] gb|ADJ65427.1| amino acid permease family protein [Herbaspirillum seropedicae SmR1] Length = 485 Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/485 (99%), Positives = 484/485 (99%) Query: 1 MSQVDCTTQDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALL 60 MSQVDCTTQDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALL Sbjct: 1 MSQVDCTTQDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALL 60 Query: 61 VLILLLLLAFSVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYG 120 VLILLLLLAFSVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYG Sbjct: 61 VLILLLLLAFSVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYG 120 Query: 121 MFGGVMSATFSDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVL 180 MFGGVMSATFSDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVL Sbjct: 121 MFGGVMSATFSDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVL 180 Query: 181 DFCILRSGGDHGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIP 240 DFCILRSGGD GVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIP Sbjct: 181 DFCILRSGGDRGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIP 240 Query: 241 IATYTSVLLIGGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVI 300 IATYTSVLLIGGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVI Sbjct: 241 IATYTSVLLIGGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVI 300 Query: 301 RILFVISIYAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVV 360 RILFVISIYAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVV Sbjct: 301 RILFVISIYAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVV 360 Query: 361 VTLFAVFDAHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPA 420 VTLFAVFDAHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEAC+SAWRVRILPA Sbjct: 361 VTLFAVFDAHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACNSAWRVRILPA 420 Query: 421 VSLLALLYILSTAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAAL 480 VSLLALLYILSTAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAAL Sbjct: 421 VSLLALLYILSTAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAAL 480 Query: 481 GSHKL 485 GSHKL Sbjct: 481 GSHKL 485 >ref|ZP_07774432.1| basic helix-loop-helix dimerization domain bHLH:DNA topoisomerase II:amino acid/polyamine transpor [Pseudomonas fluorescens WH6] gb|EFQ64430.1| basic helix-loop-helix dimerization domain bHLH:DNA topoisomerase II:amino acid/polyamine transpor [Pseudomonas fluorescens WH6] Length = 478 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/473 (72%), Positives = 400/473 (84%) Query: 13 ENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILLLLLAFSV 72 L++ ALGVGFIIFFV+SAASPLSVIAGGFPIGIMLGNGAGTPALL+L L +L+AFSV Sbjct: 6 STELKRGALGVGFIIFFVISAASPLSVIAGGFPIGIMLGNGAGTPALLLLALAVLMAFSV 65 Query: 73 GYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGVMSATFSD 132 GYTTMARHVTNAGGFYAF+S GLGG+AGG A VLAMFAYNILQI LYGMFGGV+S T Sbjct: 66 GYTTMARHVTNAGGFYAFTSRGLGGLAGGSAAVLAMFAYNILQIALYGMFGGVVSGTMES 125 Query: 133 IFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRSGGDHG 192 +FG+ L WW Y+ +AM S+AILGYR IDLSAR+LSVVV+AEYLA+L LDF IL++GGD G Sbjct: 126 VFGLVLPWWSYSLLAMASIAILGYRKIDLSARVLSVVVIAEYLAILTLDFAILKTGGDSG 185 Query: 193 VNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLIGG 252 VNLDSFS +V SGTPSIGLLF FAAFIGFEATTIYGEEAK+P+R IPIATY+SVLLIGG Sbjct: 186 VNLDSFSSQHVFSGTPSIGLLFCFAAFIGFEATTIYGEEAKDPQRTIPIATYSSVLLIGG 245 Query: 253 FYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFVISIYAGL 312 FY +S+W++++G G+DK+V +L+ +QDPT FIY MSDH+ GP LT +IR+LF++SIYAGL Sbjct: 246 FYALSVWAMVVGVGADKIVPMLQALQDPTTFIYGMSDHFVGPHLTQIIRVLFMVSIYAGL 305 Query: 313 LAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFAVFDAHPI 372 LAFH++AARYFYA+GRDGLLH LLGTTHR +QSPHMGSALQS IAAVVV +FA DA PI Sbjct: 306 LAFHNAAARYFYAIGRDGLLHSLLGTTHRVHQSPHMGSALQSLIAAVVVLIFAAMDADPI 365 Query: 373 LHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLALLYILST 432 L LFAWFS+LA LC++LLM MTS AV YF R PE WR RILP S LALL +L Sbjct: 366 LQLFAWFSNLATLCVILLMAMTSVAVCVYFHRHPELKVGLWRGRILPIFSCLALLMVLVL 425 Query: 433 AILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALGSHKL 485 A++HFDVLTGAS+ +SY LC++IP A++ GV LA RLR+ +P RF ALGSHKL Sbjct: 426 AVVHFDVLTGASQLLSYGLCAVIPAALLAGVYLAARLRKVSPQRFLALGSHKL 478 >ref|YP_002872669.1| putative amino acid permease [Pseudomonas fluorescens SBW25] emb|CAY49321.1| putative amino acid permease [Pseudomonas fluorescens SBW25] Length = 503 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/475 (72%), Positives = 406/475 (85%) Query: 11 KEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILLLLLAF 70 L++ ALGVGFIIFFV+SAASPLSVIAGGFPIGIMLGNGAGTPALL+L LL+LLAF Sbjct: 29 NSSTELKRGALGVGFIIFFVISAASPLSVIAGGFPIGIMLGNGAGTPALLILALLVLLAF 88 Query: 71 SVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGVMSATF 130 SVGYTTM+RHVTNAGGFYAF+S GLGG+AGG AGVLAMFAYNILQ+GLYGMFGGV+S T Sbjct: 89 SVGYTTMSRHVTNAGGFYAFTSRGLGGLAGGAAGVLAMFAYNILQVGLYGMFGGVVSGTM 148 Query: 131 SDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRSGGD 190 FG+ L WW Y+ +AM S+AILGYR IDLSAR+LSVVV+AEYLA+LVLDF IL+SGGD Sbjct: 149 EAAFGLVLPWWSYSLMAMASIAILGYRKIDLSARVLSVVVIAEYLAILVLDFAILKSGGD 208 Query: 191 HGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLI 250 G+NLDSFS ++V SGTPSIGLLF FAAFIGFEATTIYGEEAKNPKR+IPIATY SVLLI Sbjct: 209 SGINLDSFSSSHVFSGTPSIGLLFCFAAFIGFEATTIYGEEAKNPKRSIPIATYCSVLLI 268 Query: 251 GGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFVISIYA 310 GGFY +S+WS+++G G+DK+V LL+ +QDPT FIY MSDH+ GP LT +IR+LF++SIYA Sbjct: 269 GGFYALSVWSMVVGVGADKIVPLLQSLQDPTTFIYGMSDHFVGPQLTQIIRVLFMVSIYA 328 Query: 311 GLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFAVFDAH 370 GLLAFH++AARYFYA+GRDGLLH LLGTTHR +QSPHMGSALQS IAAVVV +FA DA Sbjct: 329 GLLAFHNAAARYFYAIGRDGLLHSLLGTTHRVHQSPHMGSALQSLIAAVVVLIFAAMDAD 388 Query: 371 PILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLALLYIL 430 PIL LFAW S+LA LC++LLM +TS AV YF R PE R RILP +S LAL+ +L Sbjct: 389 PILQLFAWLSNLATLCVILLMALTSVAVCAYFHRHPELKVGMLRGRILPGISCLALVMVL 448 Query: 431 STAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALGSHKL 485 A++HFDVLTGAS+ +SY+LC++IP A+++G++LA RLR+ +P RF ALGSHKL Sbjct: 449 VLAVVHFDVLTGASQLLSYSLCAIIPAALIIGIVLAARLRKSSPQRFLALGSHKL 503 >ref|YP_004354364.1| amino acid permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69360.1| putative amino acid permease, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 482 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/475 (71%), Positives = 399/475 (84%) Query: 11 KEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILLLLLAF 70 L++ ALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALL+L LL+LLAF Sbjct: 8 NSSTELKRGALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLILALLVLLAF 67 Query: 71 SVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGVMSATF 130 SVGYTTM+RHVTNAGGFYAF+S GLGG+AGG AGVLAMFAYNILQ+GLYGMFGGV+S T Sbjct: 68 SVGYTTMSRHVTNAGGFYAFTSRGLGGLAGGAAGVLAMFAYNILQVGLYGMFGGVVSGTM 127 Query: 131 SDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRSGGD 190 +FG+ L WW Y+ +AM SVAILGYR IDLSAR+LSV+V+AEYLA+L+LDF ILR+GGD Sbjct: 128 ESVFGLVLPWWSYSLMAMASVAILGYRKIDLSARVLSVIVIAEYLAILLLDFAILRTGGD 187 Query: 191 HGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLI 250 G+NLD+F+ +V SGTPSIGLLF FAAFIGFEATTIYGEEAKNP+R IPIATY SVLLI Sbjct: 188 SGINLDAFAGRHVFSGTPSIGLLFCFAAFIGFEATTIYGEEAKNPQRTIPIATYCSVLLI 247 Query: 251 GGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFVISIYA 310 GGFY +S+WS++IG G+DK+V L+ +QDPT FIY MSDH+ GP LT VIR+LF++SIYA Sbjct: 248 GGFYALSVWSMVIGVGADKIVSTLQALQDPTTFIYGMSDHFVGPHLTQVIRVLFMVSIYA 307 Query: 311 GLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFAVFDAH 370 GLLAFH++AARYFYA+GRDGLL LGTTHR +QSPHMGSALQS I+AVVV +FA DA Sbjct: 308 GLLAFHNAAARYFYAIGRDGLLPSRLGTTHRVHQSPHMGSALQSLISAVVVLIFAAMDAD 367 Query: 371 PILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLALLYIL 430 PIL LFAW S+LA LC++LLM +TSAAV + RR PE WR RI P S +ALL +L Sbjct: 368 PILQLFAWLSNLATLCVILLMALTSAAVWAFARRHPELKLGIWRGRIFPGFSCIALLTVL 427 Query: 431 STAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALGSHKL 485 A++HFDVLTGAS+++SY LC++IP A++ GV LA RLR+ AP R+ LGSHKL Sbjct: 428 FIAVVHFDVLTGASKTLSYGLCAIIPAALLAGVFLAARLRKVAPQRYRVLGSHKL 482 >ref|YP_004353621.1| amino acid transporter membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68617.1| putative amino acid transporter, membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 482 Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust. Identities = 338/475 (71%), Positives = 401/475 (84%) Query: 11 KEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILLLLLAF 70 L++ ALGVGFIIFFV+SAASPLSVIAGGFPIGIMLGNGAGTPALL+L LL+LLAF Sbjct: 8 SSSTELKRGALGVGFIIFFVISAASPLSVIAGGFPIGIMLGNGAGTPALLLLALLVLLAF 67 Query: 71 SVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGVMSATF 130 S GYT M+RH+TNAGGFYAF+S GLGG+AGG AGVLAMFAYNILQ+GLYGMFGGV+S T Sbjct: 68 SAGYTAMSRHMTNAGGFYAFTSRGLGGLAGGAAGVLAMFAYNILQVGLYGMFGGVVSGTM 127 Query: 131 SDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRSGGD 190 + +FG+ L WW Y+ +AM S+AILGYR IDLSAR+LSVVV+AEYLA+L LDF IL++GGD Sbjct: 128 ASVFGLDLPWWTYSLLAMASIAILGYRKIDLSARVLSVVVIAEYLAILTLDFAILKTGGD 187 Query: 191 HGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLI 250 G+NLDSF ++V SGTPSIGLLF FAAFIGFEATTIYGEEA+NP R IPIATY+SVLLI Sbjct: 188 SGINLDSFDRSHVFSGTPSIGLLFCFAAFIGFEATTIYGEEARNPHRTIPIATYSSVLLI 247 Query: 251 GGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFVISIYA 310 GGFY +S+W+++IG G+DK+V L+ +QDPT FIY MSDH+ GP LT +IR+LF++SIYA Sbjct: 248 GGFYALSVWAMVIGVGADKIVPTLQALQDPTTFIYGMSDHFVGPHLTQIIRVLFMVSIYA 307 Query: 311 GLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFAVFDAH 370 GLLAFH++AARYFYA+GRDGLLH LGTTHR +QSPHMGS LQS IAAVVV +FA DA Sbjct: 308 GLLAFHNAAARYFYAIGRDGLLHSRLGTTHRVHQSPHMGSVLQSLIAAVVVLIFAALDAD 367 Query: 371 PILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLALLYIL 430 PIL LFAWFS+LA LC++LLM +TSAAV YFR PE WR RILP S LALL +L Sbjct: 368 PILQLFAWFSNLATLCVILLMALTSAAVFVYFRAHPELKLGLWRGRILPVFSCLALLAVL 427 Query: 431 STAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALGSHKL 485 + A++HFDVLTGAS+ +SY LC++IP A+++GV LA RLR+ +P RF ALGSHKL Sbjct: 428 ALAVIHFDVLTGASQLLSYGLCAVIPAALIVGVFLAARLRKVSPERFMALGSHKL 482 >ref|YP_002872672.1| putative transmembrane permease [Pseudomonas fluorescens SBW25] emb|CAY49324.1| putative transmembrane permease protein [Pseudomonas fluorescens SBW25] Length = 482 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 340/475 (71%), Positives = 403/475 (84%) Query: 11 KEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILLLLLAF 70 L++ ALGVGFIIFFVVSAASPLSVIAGG PIGIMLGNGAGTPALL+L LL+LLAF Sbjct: 8 NSSTQLKRGALGVGFIIFFVVSAASPLSVIAGGVPIGIMLGNGAGTPALLILALLVLLAF 67 Query: 71 SVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGVMSATF 130 SVGYTTMARH+TNAGGFYAF++ GLGG+AGG AGVLAMFAYNILQ+GLYGMFGGV+S T Sbjct: 68 SVGYTTMARHLTNAGGFYAFTARGLGGLAGGAAGVLAMFAYNILQVGLYGMFGGVVSGTM 127 Query: 131 SDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRSGGD 190 G+ L WW Y+ +AM S+AILGYR IDLSAR+LSV+V+AEYLA+LVLDF IL+SGGD Sbjct: 128 EATLGLVLPWWSYSLMAMASIAILGYRKIDLSARVLSVMVIAEYLAILVLDFAILKSGGD 187 Query: 191 HGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLI 250 G+NLDSFS ++V SGTPSIGLLF FAAFIGFEATTIYGEEAK+PKR IPIATY SVLLI Sbjct: 188 SGINLDSFSRSHVFSGTPSIGLLFCFAAFIGFEATTIYGEEAKDPKRTIPIATYCSVLLI 247 Query: 251 GGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFVISIYA 310 GGFY +S+WS+++G G+DK+V +L+ +QDPT FIY MSDH+ GP LT VIR+LF++SIYA Sbjct: 248 GGFYALSVWSMVVGVGADKIVPMLQALQDPTTFIYGMSDHFVGPQLTQVIRVLFMVSIYA 307 Query: 311 GLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFAVFDAH 370 GLLAFH++AARYFYA+GRDGLLH LGTTHR +QSPHMGSALQS I+AVVV +FA DA Sbjct: 308 GLLAFHNAAARYFYAIGRDGLLHSQLGTTHRVHQSPHMGSALQSLISAVVVLIFAALDAD 367 Query: 371 PILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLALLYIL 430 PIL LFAW S+LA LC++LLM +TSAAV+ +FRR P+ R +I PA S LALL +L Sbjct: 368 PILQLFAWLSNLATLCVILLMALTSAAVLVFFRRHPQLQVGVLRGQIFPAFSCLALLAVL 427 Query: 431 STAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALGSHKL 485 A++HFDVLTGAS+ +SY+LC++IPLA++ GV LA RLR+ +P RF ALGSHKL Sbjct: 428 VLAVVHFDVLTGASQLLSYSLCAIIPLALLGGVFLAARLRKASPQRFLALGSHKL 482 >ref|YP_004227365.1| amino acid permease-associated protein [Burkholderia sp. CCGE1001] gb|ADX54305.1| amino acid permease-associated region [Burkholderia sp. CCGE1001] Length = 482 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/477 (57%), Positives = 353/477 (74%) Query: 9 QDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILLLLL 68 LRK ALG+GFI+FFV+SAA PL IAGGFPIGIMLGNGAGTPALL+ +L+LL Sbjct: 6 DPTPSTELRKGALGLGFIVFFVISAAGPLVAIAGGFPIGIMLGNGAGTPALLIATVLILL 65 Query: 69 AFSVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGVMSA 128 F+ GYT M+R+VTNAGGFYAF+S GLGG AGG A LA+ YN +QIGLYGMFG V S Sbjct: 66 MFAAGYTAMSRYVTNAGGFYAFTSRGLGGTAGGAAAFLALLGYNTMQIGLYGMFGAVASG 125 Query: 129 TFSDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRSG 188 S G+ + WWV + VA+ S+A+LGYR IDLSA+LLS++V EY+ VL+LD IL+SG Sbjct: 126 FLSARLGVTVPWWVCSLVALASIAVLGYRQIDLSAKLLSLLVFGEYIVVLILDVAILKSG 185 Query: 189 GDHGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVL 248 G HGV SF+P +SGTP+IG LF FA+F+GFEATTIY EEAK+P+R +P+ATY SVL Sbjct: 186 GAHGVTFASFTPHVFLSGTPAIGFLFCFASFVGFEATTIYSEEAKDPRRTVPLATYISVL 245 Query: 249 LIGGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFVISI 308 LIGGFY SLW +++GAG+ ++VK L G+ DPT F+Y +SDHYA LT + +LF+ S+ Sbjct: 246 LIGGFYAFSLWCMVLGAGAGEIVKTLNGLADPTTFLYSLSDHYASHALTDAMSVLFITSV 305 Query: 309 YAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFAVFD 368 YAGLLAFH+SAARYFYA GR+GLL LG TH T+ SPH+GS LQ+ IAA VV F V Sbjct: 306 YAGLLAFHNSAARYFYASGREGLLPASLGHTHATHSSPHVGSVLQTVIAACVVIAFIVGK 365 Query: 369 AHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLALLY 428 + P+L LF+W ++LA LC++ LM+++SAAV+ +F R + + A RV + P +S +ALL Sbjct: 366 SDPVLTLFSWLTNLATLCIIALMVLSSAAVLRFFTRTAKREEGALRVFVFPVLSGMALLG 425 Query: 429 ILSTAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALGSHKL 485 +L AI++F VLTGAS +SY L ++P+ + G+ A RL+R P F ALG+ +L Sbjct: 426 VLVLAIVNFPVLTGASVGLSYGLTVLMPVFAIAGIAAARRLKRRNPRAFDALGNSRL 482 >ref|YP_004234208.1| amino acid permease-associated region [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45641.1| amino acid permease-associated region [Acidovorax avenae subsp. avenae ATCC 19860] Length = 490 Score = 465 bits (1196), Expect = e-129, Method: Compositional matrix adjust. Identities = 258/474 (54%), Positives = 335/474 (70%), Gaps = 1/474 (0%) Query: 11 KEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILLLLLAF 70 LR++ LG G I V+SAASPLSV+AGGFPIGIMLGNGAGTPAL+++ L LLL F Sbjct: 17 PSSTGLRRSTLGAGVITLLVISAASPLSVVAGGFPIGIMLGNGAGTPALVLVALALLLMF 76 Query: 71 SVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGVMSATF 130 + GYT MA VT+AGGFY+ + GLGG AGG ++A+ Y +LQ GLYG+ G V S Sbjct: 77 AAGYTAMATCVTSAGGFYSMVARGLGGHAGGAVAMVAILGYVVLQFGLYGLLGAVTSEAI 136 Query: 131 SDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRSGGD 190 + G L WW A AM SVA GY ID SA++L+ VVAEY+ VL LD IL GG Sbjct: 137 HALSGWQLPWWSCALAAMASVAYFGYHQIDFSAKMLAGFVVAEYVVVLCLDVLILAHGGA 196 Query: 191 HGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVLLI 250 G++L S++P + SG P IGLLF FAAFIGFEATTIY EEAK+P+R+IP+ATY ++LL+ Sbjct: 197 DGIHLRSYTPQAISSGNPFIGLLFCFAAFIGFEATTIYSEEAKDPRRSIPVATYAALLLV 256 Query: 251 GGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFVISIYA 310 G FY SLW L+IGAGS+KVV + ++DPT F+YL+SD Y GP LT V+R +F++SIYA Sbjct: 257 GCFYSFSLWCLVIGAGSEKVVAAISALEDPTNFLYLLSDQYGGPQLTLVLRGMFIVSIYA 316 Query: 311 GLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFAVFDAH 370 GL+AFH+S ARYFY++GR+GLL +LG TH Y+SPH+ S LQ+A+ AVVV FAV A Sbjct: 317 GLIAFHNSTARYFYSMGREGLLPAVLGRTHPEYKSPHVASLLQTALCAVVVIGFAVAGAD 376 Query: 371 PILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLALLYIL 430 P+L +F+W S+LA++C++ LM+ T+AAVI +F RP RV +LP ++ L L +L Sbjct: 377 PVLSVFSWLSNLASVCVLALMVCTAAAVIAFFHGRPRG-HGRLRVLVLPLLACLGLCAVL 435 Query: 431 STAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALGSHK 484 + A+ +F VLTGAS S L +P+A +LG+ A RLRR P RFA LG + Sbjct: 436 ALAVANFHVLTGASPRASIVLVGAVPVAALLGLWAARRLRRREPGRFANLGQDR 489 >ref|YP_004139909.1| amino acid permease-associated protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV09859.1| amino acid permease-associated region [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 482 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/477 (46%), Positives = 339/477 (71%), Gaps = 1/477 (0%) Query: 6 CTTQDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILL 65 ++ N LRKN+LGVG I F V+SAA+PL+ +AGG P+G+++GNGAG +++ + Sbjct: 3 AVSEQAPANRLRKNSLGVGAITFMVISAAAPLTAVAGGTPLGMLMGNGAGFAGTYLIVTV 62 Query: 66 LLLAFSVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGV 125 LLL F+VGY M+RHV NAG FYA+++ GLG +AGG ++A+ +YN +QIG+ G+ G Sbjct: 63 LLLLFAVGYVAMSRHVGNAGAFYAYAARGLGSMAGGATALIAILSYNAMQIGVMGLLGAA 122 Query: 126 MSATFSDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCIL 185 + F+ +GI+L WWV++ +A+ VA+LGYR +DLSA++L+V+V+ EYL VL+LD IL Sbjct: 123 TAGLFAA-WGINLPWWVWSFIAIALVAVLGYRQVDLSAKILTVLVLCEYLVVLILDIAIL 181 Query: 186 RSGGDHGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYT 245 ++GGD G++ FS + ++SG+P+I +LF FAAFIGFEATTIY EEA++PK IP ATY Sbjct: 182 KTGGDSGLSAAPFSWSQIVSGSPAIAILFCFAAFIGFEATTIYAEEARDPKVTIPRATYF 241 Query: 246 SVLLIGGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFV 305 SV+LIG FY ++ W + +GAG DK++ L+G+QDPT F++ +SD YAG L+ + ILFV Sbjct: 242 SVVLIGVFYMLTAWLMAVGAGVDKLLPTLQGLQDPTTFLFGLSDRYAGTMLSQAMSILFV 301 Query: 306 ISIYAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFA 365 S++AG+LAFH++ ARY Y GR+ LL + +G TH +QSPH+ S +QS +AAVVV LFA Sbjct: 302 SSLFAGVLAFHNAVARYIYVSGREKLLPQTIGVTHPVHQSPHVASVIQSVLAAVVVGLFA 361 Query: 366 VFDAHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLA 425 V P+L LF+W +++A L ++++M + S AV+ +FR P A ++A + ILP ++ +A Sbjct: 362 VLGLDPVLALFSWLTNVATLGVIVMMAVASLAVVMFFRANPAAHENALKTTILPGLTFIA 421 Query: 426 LLYILSTAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALGS 482 + I+ +++F L+GA + L ++ +A ++G++LA+ L+ P+ F LG Sbjct: 422 FVIIIYLIVINFGSLSGAGGFLGVFLPGLVLIAAIVGLLLASALKSRDPVAFKNLGQ 478 >ref|YP_004609290.1| amino acid/polyamine/organocation transporter [Mesorhizobium opportunistum WSM2075] gb|AEH85196.1| amino acid/polyamine/organocation transporter, APC superfamily [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 224/473 (47%), Positives = 335/473 (70%), Gaps = 1/473 (0%) Query: 9 QDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALLVLILLLLL 68 + N LRKN+LGVG I F V+SAA+PL+ +AGG P+G+++GNGAG +++ +LLL Sbjct: 6 EQAPANRLRKNSLGVGAITFMVISAAAPLTAVAGGTPLGMLMGNGAGFAGTYLIVTVLLL 65 Query: 69 AFSVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYGMFGGVMSA 128 F+VGY M+RHV NAG FYA+++ GLGG AGG ++A+ +YN +QIG+ G+ G + Sbjct: 66 LFAVGYVAMSRHVGNAGAFYAYAARGLGGHAGGATALIAILSYNAMQIGVMGLLGAATAG 125 Query: 129 TFSDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVLDFCILRSG 188 F+ +GI+L WWV++ +A+ VA+LGYR +DLSA++L+V+V+ EY VL+LD IL++G Sbjct: 126 LFAG-WGINLPWWVWSFIAIALVAVLGYRQVDLSAKILTVLVLCEYAVVLILDIAILKTG 184 Query: 189 GDHGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIPIATYTSVL 248 GD G++ FS + + SG P+I +LF FAAFIGFEATTIY EEA++PK IP ATY SV+ Sbjct: 185 GDSGLSAAPFSWSQITSGAPAIAILFCFAAFIGFEATTIYAEEARDPKVTIPRATYISVV 244 Query: 249 LIGGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVIRILFVISI 308 LIG FY ++ W + +GAG DK++ L+G+QDPT F++ +SD YAG L+ + ILFV S+ Sbjct: 245 LIGVFYMVTAWLMAVGAGVDKLLPALQGLQDPTTFLFGLSDRYAGTMLSQAMSILFVSSL 304 Query: 309 YAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVVVTLFAVFD 368 +AG+LAFH++ ARY Y GR+ LL + +G TH +QSPH+ S +QS +AAVVV LFAV Sbjct: 305 FAGVLAFHNAVARYIYVSGREKLLPQSIGVTHSAHQSPHVASVIQSVLAAVVVGLFAVLG 364 Query: 369 AHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACDSAWRVRILPAVSLLALLY 428 P+L LF+W +++A L ++++M + S AV+ YFR P A ++A + ILP ++ +A + Sbjct: 365 LDPVLALFSWLTNVATLGVIVMMAVASLAVVMYFRANPSAQENALKTTILPGLTFIAFVV 424 Query: 429 ILSTAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAALG 481 I+ +++F L+GA + L ++ +A V+G++LA L+ P+ F +LG Sbjct: 425 IIYLIVINFGSLSGAGGFLGVFLPGLVLIAAVVGLLLAGALKSRDPVAFESLG 477