BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0005.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777337.1| two component response regulator protein [He... 372 e-101 ref|YP_002232744.1| two-component regulatory system response reg... 266 3e-69 ref|YP_839437.1| two component transcriptional regulator [Burkho... 265 4e-69 ref|YP_001778003.1| two component transcriptional regulator [Bur... 265 4e-69 ref|YP_624897.1| two component transcriptional regulator [Burkho... 265 7e-69 ref|YP_373804.1| two component transcriptional regulator [Burkho... 263 1e-68 ref|YP_001584325.1| two component transcriptional regulator [Bur... 260 1e-67 ref|NP_521875.1| two component response regulator transcription ... 256 2e-66 emb|CAQ57170.1| two component response regulator protein [Ralsto... 256 2e-66 ref|ZP_00946142.1| Transcriptional regulator, two component resp... 254 6e-66 >ref|YP_003777337.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65429.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 191/203 (94%), Positives = 192/203 (94%), Gaps = 4/203 (1%) Query: 1 MHTGEPAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALK 60 MHTGEPAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALK Sbjct: 22 MHTGEPAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALK 81 Query: 61 PDLVLLDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNP 120 PDLVLLDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNP Sbjct: 82 PDLVLLDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNP 141 Query: 121 AEVVARVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKL 180 AEVVARVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKL Sbjct: 142 AEVVARVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKL 201 Query: 181 LAQL-RARPAACSAAQ---SCWP 199 LAQL RA S A+ SC P Sbjct: 202 LAQLARAPRRVFSRAELLASCLP 224 >ref|YP_002232744.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] emb|CAR53967.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 245 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 135/198 (68%), Positives = 159/198 (80%), Gaps = 4/198 (2%) Query: 6 PAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVL 65 P+ A A AL+LIAED PEIAEIL AY ARNG+R+VHAADG RALELHL+LKPDLVL Sbjct: 5 PSSPGAGQGAQALVLIAEDEPEIAEILIAYFARNGLRTVHAADGRRALELHLSLKPDLVL 64 Query: 66 LDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 125 LD+QMP V+GW+VL++IR R +TPVI+LTALDQD+DKLTGLRIGADDYVVKPFNPAEVVA Sbjct: 65 LDVQMPHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVA 124 Query: 126 RVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL- 184 R +AVLRRS+ +++++VLR PF ID E HE E++GV HTLVLTLTEFKLLAQL Sbjct: 125 RAQAVLRRSMAGARQEEQRVLRAAPFEIDLEHHEATVEVDGVRHTLVLTLTEFKLLAQLA 184 Query: 185 RARPAACSAAQ---SCWP 199 RA S A+ +C P Sbjct: 185 RAPRRVFSRAELMATCLP 202 >ref|YP_839437.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gb|ABK12544.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 245 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 134/198 (67%), Positives = 159/198 (80%), Gaps = 8/198 (4%) Query: 10 TAPPAAG----ALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVL 65 ++ P AG AL+LIAED PEIAEIL AY ARNG+R+VHAADG RALELHL+LKPDLVL Sbjct: 5 SSSPGAGQGAQALVLIAEDEPEIAEILTAYFARNGLRTVHAADGRRALELHLSLKPDLVL 64 Query: 66 LDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 125 LD+QMP V+GW+VL++IR R +TPVI+LTALDQD+DKLTGLRIGADDYVVKPFNPAEVVA Sbjct: 65 LDVQMPHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVA 124 Query: 126 RVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL- 184 R +AVLRRS+ +++++VLR PF ID E HE E++G HTLVLTLTEFKLLAQL Sbjct: 125 RAQAVLRRSMAGSRQEEQRVLRAAPFEIDLEHHEATVEVDGARHTLVLTLTEFKLLAQLA 184 Query: 185 RARPAACSAAQ---SCWP 199 RA S A+ +C P Sbjct: 185 RAPRRVFSRAELMATCLP 202 >ref|YP_001778003.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA93513.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 245 Score = 265 bits (677), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 134/198 (67%), Positives = 159/198 (80%), Gaps = 8/198 (4%) Query: 10 TAPPAAG----ALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVL 65 ++ P AG AL+LIAED PEIAEIL AY ARNG+R+VHAADG RALELHL+LKPDLVL Sbjct: 5 SSSPGAGQGAQALVLIAEDEPEIAEILTAYFARNGLRTVHAADGRRALELHLSLKPDLVL 64 Query: 66 LDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 125 LD+QMP V+GW+VL++IR R +TPVI+LTALDQD+DKLTGLRIGADDYVVKPFNPAEVVA Sbjct: 65 LDVQMPHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVA 124 Query: 126 RVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL- 184 R +AVLRRS+ +++++VLR PF ID E HE E++G HTLVLTLTEFKLLAQL Sbjct: 125 RAQAVLRRSMAGSRQEEQRVLRAAPFEIDLEHHEATVEVDGARHTLVLTLTEFKLLAQLA 184 Query: 185 RARPAACSAAQ---SCWP 199 RA S A+ +C P Sbjct: 185 RAPRRVFSRAELMATCLP 202 >ref|YP_624897.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gb|ABF79924.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] Length = 259 Score = 265 bits (676), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 134/198 (67%), Positives = 159/198 (80%), Gaps = 8/198 (4%) Query: 10 TAPPAAG----ALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVL 65 ++ P AG AL+LIAED PEIAEIL AY ARNG+R+VHAADG RALELHL+LKPDLVL Sbjct: 19 SSSPGAGQGAQALVLIAEDEPEIAEILTAYFARNGLRTVHAADGRRALELHLSLKPDLVL 78 Query: 66 LDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 125 LD+QMP V+GW+VL++IR R +TPVI+LTALDQD+DKLTGLRIGADDYVVKPFNPAEVVA Sbjct: 79 LDVQMPHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVA 138 Query: 126 RVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL- 184 R +AVLRRS+ +++++VLR PF ID E HE E++G HTLVLTLTEFKLLAQL Sbjct: 139 RAQAVLRRSMAGSRQEEQRVLRAAPFEIDLEHHEATVEVDGARHTLVLTLTEFKLLAQLA 198 Query: 185 RARPAACSAAQ---SCWP 199 RA S A+ +C P Sbjct: 199 RAPRRVFSRAELMATCLP 216 >ref|YP_373804.1| two component transcriptional regulator [Burkholderia sp. 383] gb|ABB13160.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 245 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 135/198 (68%), Positives = 158/198 (79%), Gaps = 4/198 (2%) Query: 6 PAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVL 65 P P++A A AL+LIAED PEIAEIL AYLAR G+R+VHAADG RALELHL LKPDLVL Sbjct: 7 PTPSSAGQDAQALVLIAEDEPEIAEILTAYLARGGLRTVHAADGRRALELHLQLKPDLVL 66 Query: 66 LDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 125 LD+QMP V+GW+VL++IR R +TPVI+LTALDQD+DKLTGLRIGADDYVVKPFNPAEVVA Sbjct: 67 LDVQMPHVDGWKVLAEIRHRGDTPVIMLTALDQDIDKLTGLRIGADDYVVKPFNPAEVVA 126 Query: 126 RVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL- 184 R +AVLRRS+ +++++VLRV PF ID E HE E+ HTLVLTLTEFKLLAQL Sbjct: 127 RAQAVLRRSMAGSRQEEQRVLRVAPFEIDLEHHEATLEVGSERHTLVLTLTEFKLLAQLA 186 Query: 185 RARPAACSAAQ---SCWP 199 RA S A+ +C P Sbjct: 187 RAPRRVFSRAELMATCLP 204 >ref|YP_001584325.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|YP_001948546.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] gb|ABX18033.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] dbj|BAG46010.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] Length = 245 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/170 (74%), Positives = 146/170 (85%) Query: 15 AGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVLLDIQMPQVN 74 A AL+LIAED PEIAEIL AY AR+G+R+VHAADG RALELHL++KPDLVLLD+QMPQ++ Sbjct: 14 AQALVLIAEDEPEIAEILTAYFARSGLRTVHAADGRRALELHLSIKPDLVLLDVQMPQID 73 Query: 75 GWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRS 134 GW+VL++IR R +TPVI+LTALDQDVDKLTGLRIGADDYVVKPFNPAEVVAR +AVLRRS Sbjct: 74 GWKVLAEIRHRGDTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARAQAVLRRS 133 Query: 135 LPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL 184 + D + VLR PF ID E+HE EI+G HTLVLTLTEFKLLAQL Sbjct: 134 MAASRDDAQPVLRAAPFEIDLERHEATVEIDGTRHTLVLTLTEFKLLAQL 183 >ref|NP_521875.1| two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD17465.1| probable two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 256 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 133/198 (67%), Positives = 155/198 (78%), Gaps = 4/198 (2%) Query: 6 PAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVL 65 P P+ A +A ALILIAED PEIA+ILAAYLAR+G+RSVHAADG ALELHL+LKPDLVL Sbjct: 16 PPPSGAAQSAQALILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVL 75 Query: 66 LDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 125 LD+QMP V+GW+ LS+IR R +TPVI+LTALDQD+DKL GLRIGADDYVVKPFNPAEVVA Sbjct: 76 LDVQMPHVDGWKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVA 135 Query: 126 RVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL- 184 R +AVLRRS+ R D++VLRV PF ID + HE ++ H L LTLTEFKLLAQL Sbjct: 136 RTQAVLRRSMSGTGRRDQRVLRVAPFQIDLDNHEATVQVGKQRHALALTLTEFKLLAQLA 195 Query: 185 RARPAACSAAQ---SCWP 199 RA S A+ +C P Sbjct: 196 RAPKRVFSRAELLAACLP 213 >emb|CAQ57170.1| two component response regulator protein [Ralstonia solanacearum MolK2] Length = 256 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 134/198 (67%), Positives = 155/198 (78%), Gaps = 4/198 (2%) Query: 6 PAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVL 65 P P+ A +A ALILIAED PEIA+ILAAYLAR+G+RSVHAADG ALELHL+LKPDLVL Sbjct: 16 PPPSGAAQSAQALILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVL 75 Query: 66 LDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 125 LD+QMP V+GW+ LS+IR R +TPVI+LTALDQD+DKL GLRIGADDYVVKPFNPAEVVA Sbjct: 76 LDVQMPHVDGWKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVA 135 Query: 126 RVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL- 184 R +AVLRRS R D++VLRV PF ID + HEV ++ H L LTLTEFKLLAQL Sbjct: 136 RTQAVLRRSRSDAGRRDQRVLRVAPFQIDLDNHEVTVQVGKQRHVLALTLTEFKLLAQLA 195 Query: 185 RARPAACSAAQ---SCWP 199 RA S A+ +C P Sbjct: 196 RAPKRVFSRAELLAACLP 213 >ref|ZP_00946142.1| Transcriptional regulator, two component response regulator [Ralstonia solanacearum UW551] gb|EAP71371.1| Transcriptional regulator, two component response regulator [Ralstonia solanacearum UW551] Length = 256 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 133/198 (67%), Positives = 154/198 (77%), Gaps = 4/198 (2%) Query: 6 PAPTTAPPAAGALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVL 65 P P+ A +A ALILIAED PEIA+ILAAYLAR+G+RSVHAADG ALELHL+LKPDLVL Sbjct: 16 PPPSGAAQSAQALILIAEDEPEIADILAAYLARSGLRSVHAADGREALELHLSLKPDLVL 75 Query: 66 LDIQMPQVNGWQVLSQIRQRDNTPVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVA 125 LD+QMP V+GW+ LS+IR R +TPVI+LTALDQD+DKL GLRIGADDYVVKPFNPAEVVA Sbjct: 76 LDVQMPHVDGWKALSEIRHRGDTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVA 135 Query: 126 RVEAVLRRSLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQL- 184 R +AVLRRS R D++VLRV PF ID + HE ++ H L LTLTEFKLLAQL Sbjct: 136 RTQAVLRRSRSDAGRRDQRVLRVAPFQIDLDNHEATVQVGKQRHVLALTLTEFKLLAQLA 195 Query: 185 RARPAACSAAQ---SCWP 199 RA S A+ +C P Sbjct: 196 RAPKRVFSRAELLAACLP 213