BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0139.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004418711.1| Transcriptional regulator [Pusillimonas sp. ... 152 4e-35 ref|YP_001429556.1| GntR family transcriptional regulator [Parac... 147 2e-33 ref|NP_772917.1| transcriptional regulator [Bradyrhizobium japon... 141 6e-32 ref|NP_949505.1| GntR family regulatory protein [Rhodopseudomona... 141 8e-32 ref|ZP_03544253.1| transcriptional regulator, GntR family [Comam... 141 9e-32 ref|YP_002822979.1| GntR family transcriptional regulator [Sinor... 140 1e-31 ref|YP_002947574.1| transcriptional regulator, GntR family [Vari... 136 2e-30 ref|YP_003692465.1| GntR family transcriptional regulator [Stark... 135 5e-30 ref|YP_004230831.1| GntR family transcriptional regulator [Burkh... 134 6e-30 ref|YP_002822632.1| GntR family transcriptional regulator [Sinor... 133 2e-29 >ref|YP_004418711.1| Transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC22087.1| Transcriptional regulator [Pusillimonas sp. T7-7] Length = 235 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/200 (44%), Positives = 123/200 (61%), Gaps = 10/200 (5%) Query: 1 LSAARLATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIEC 60 L+ L VSL AIREALSRL+AEG+++AE HRGFRV+ +SK +L+DLT+TR EIE Sbjct: 32 LNIKSLEGRLGVSLGAIREALSRLSAEGMVNAEAHRGFRVSSISKEELLDLTRTRIEIES 91 Query: 61 IALRRSIESGDAAWEARVTAAFRALQ-----ASEGKARPLDQRRYELHSDFHHALLEACG 115 + L ++IE GD WE R+ A ++ S+ AR D + H +FH AL+ AC Sbjct: 92 LCLSKAIEVGDVEWETRIVGAAHRMERLQRSPSDPVARVGDDWN-QAHGEFHEALVSACP 150 Query: 116 SEWLLRLRGMLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQHTL 175 S WL R+R +L+E++ERYR LS R+V EH ++ +AV++RD A A L H L Sbjct: 151 SAWLHRIRRLLYEQSERYRRLSVPLDTDHRDVRDEHRRIMDAVLRRDEAAALQELKNHLL 210 Query: 176 ETTKALLQIEDQALFADDKP 195 TT+ +L ++ DKP Sbjct: 211 ATTQIIL----RSPLLQDKP 226 >ref|YP_001429556.1| GntR family transcriptional regulator [Paracoccus methylutens] ref|YP_001429564.1| GntR family transcriptional regulator [Paracoccus methylutens] ref|YP_001429575.1| GntR family transcriptional regulator [Paracoccus methylutens] gb|ABS87607.1| putative GntR family transcriptional regulator [Paracoccus methylutens] gb|ABS87615.1| putative GntR family transcriptional regulator [Paracoccus methylutens] gb|ABS87626.1| putative GntR family transcriptional regulator [Paracoccus methylutens] Length = 263 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 92/212 (43%), Positives = 123/212 (58%), Gaps = 9/212 (4%) Query: 1 LSAARLATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIEC 60 L + LA + VSL+A+REALSRL A+GL+ AED RGFRV+ +S+ DL DLT+TR EIE Sbjct: 49 LPISALAQAFDVSLAAVREALSRLVADGLVVAEDQRGFRVSPISEFDLEDLTRTRIEIEV 108 Query: 61 IALRRSIESGDAAWEARVTAAFRALQASEGKARPLDQRRYE-----LHSDFHHALLEACG 115 +ALRRS+E+G AW A V A+ L+ + P D ++ LH FH L +ACG Sbjct: 109 LALRRSMEAGGDAWMADVRQAWDDLRHAP-YMNPSDASQHNEGWNTLHDRFHRTLTQACG 167 Query: 116 SEWLLRLRGMLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQH-- 173 WLLR R L E++ERYR L+ R+ EH + EAV RDA TA +L QH Sbjct: 168 MVWLLRFRDSLHEQSERYRRLARPAGLFTRDPFTEHANIAEAVFARDADTAALLLKQHFT 227 Query: 174 -TLETTKALLQIEDQALFADDKPVKGSKKSRQ 204 T+E +A + E+ +K K R+ Sbjct: 228 KTMELVRAAGKAENSPFHLPEKVDVADGKRRK 259 >ref|NP_772917.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51542.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 257 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/179 (46%), Positives = 110/179 (61%), Gaps = 7/179 (3%) Query: 10 YSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEI--ECIALRRSI 67 Y+VS S +REALSRL AEGL+ AED RGF VA VS DL DLT R I EC+AL +I Sbjct: 58 YAVSFSTLREALSRLVAEGLVIAEDQRGFVVAPVSIDDLNDLTYVRVLIERECVAL--AI 115 Query: 68 ESGDAAWEARVTAAFR---ALQASEGKARPLDQRRYELHSDFHHALLEACGSEWLLRLRG 124 ++GD AWEA + AF LQ G L + +LH DFH +L+ ACGS LL +R Sbjct: 116 KNGDDAWEADIIGAFHRMDRLQNRLGSNYYLSEEWGKLHGDFHFSLVAACGSPNLLEIRQ 175 Query: 125 MLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQHTLETTKALLQ 183 LFERA RYR +S + R EH+ + ++V+ RDAA A ++ +H ETT +++ Sbjct: 176 KLFERAHRYRRMSSQFRTKWRAKDVEHKMIMDSVVARDAAKAEELIERHIRETTDNVIK 234 >ref|NP_949505.1| GntR family regulatory protein [Rhodopseudomonas palustris CGA009] emb|CAE29610.1| Bacterial regulatory protein, GntR family [Rhodopseudomonas palustris CGA009] Length = 243 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 93/205 (45%), Positives = 122/205 (59%), Gaps = 13/205 (6%) Query: 1 LSAARLATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIEC 60 L A LA ++SVSL+A+REALSRL A+GL+ A D RGFRV+ VS DL D+T++R EIE Sbjct: 43 LHIAGLAKQFSVSLAAVREALSRLVADGLVQAADQRGFRVSPVSLQDLADVTRSRIEIEG 102 Query: 61 IALRRSIESGDAAWEARVTAAFRALQASEGKARPLDQRRYE----LHSDFHHALLEACGS 116 + LRRSIE GD AW V AA+ AL+A + D +Y+ H+ FH L+ C S Sbjct: 103 LMLRRSIELGDEAWLNAVEAAWSALKAFPHRFPGDDPLQYDEWAKRHNAFHLVLVSGCDS 162 Query: 117 EWLLRLRGMLFERAERYRLL-----SGNYPKVRREVHAEHEQLYEAVMKRDAATATAILT 171 WLLR R +L E++ERYR L SG P +V EH + EAV++RDA A A L Sbjct: 163 PWLLRFRKLLHEQSERYRRLSIRRDSGRDPA---DVEVEHAAIVEAVIRRDAEAAIAALA 219 Query: 172 QHTLETTKALLQIEDQALFADDKPV 196 +H TK + I + D+ V Sbjct: 220 KH-FTATKDSVAISSGGILEVDRAV 243 >ref|ZP_03544253.1| transcriptional regulator, GntR family [Comamonas testosteroni KF-1] gb|EED68539.1| transcriptional regulator, GntR family [Comamonas testosteroni KF-1] Length = 254 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 110/183 (60%), Gaps = 4/183 (2%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 L T Y S S +REALSRLA EGL+ A++ RGFRV +S DL D+T+ R ++ ALR Sbjct: 63 LQTAYGFSSSPLREALSRLAQEGLIRADERRGFRVTAISADDLADITRMRIMLDSQALRE 122 Query: 66 SIESGDAAWEARVTAAFRALQASEGKARP----LDQRRYELHSDFHHALLEACGSEWLLR 121 SI GD AWEA V AF L+ E + LDQ ++H+ FH ALL A SE L Sbjct: 123 SIAYGDDAWEASVVGAFHRLEKVESRLSDGPVVLDQGWTDMHTAFHMALLSATPSERLRT 182 Query: 122 LRGMLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQHTLETTKAL 181 L LF++AERYR S + K + EH +L +A ++RDA TA A+L +H L T + + Sbjct: 183 LSASLFDQAERYRRYSARFRKTFKHKSNEHRKLMDATLRRDADTACALLEEHILSTQRNV 242 Query: 182 LQI 184 +++ Sbjct: 243 MEV 245 >ref|YP_002822979.1| GntR family transcriptional regulator [Sinorhizobium fredii NGR234] gb|ACP22226.1| putative GntR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 239 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 114/193 (59%), Gaps = 4/193 (2%) Query: 10 YSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRRSIES 69 Y+VS S +REALSRL AEGL+ AE RGF VA +S ADL+DLT R +E ALR +I+ Sbjct: 43 YAVSFSTLREALSRLVAEGLVVAEGQRGFIVAPLSLADLVDLTDVRVLVEREALRLAIDK 102 Query: 70 GDAAWEARVTAAFR---ALQASEGKARPLDQRRYELHSDFHHALLEACGSEWLLRLRGML 126 GD WEA + + LQ G L + ++H +FH+AL+ ACGS LL +R L Sbjct: 103 GDDRWEAEIIGTYHRMDRLQGRLGHEYYLSEDWSKVHGEFHYALVSACGSPTLLEIRQKL 162 Query: 127 FERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQHTLETTKALLQIED 186 FERA RYR +S + RE EH + EAV+ RD A+ ++ +H ETT+ +++ Sbjct: 163 FERAHRYRRMSSQFRPKWREKDVEHRTIMEAVLARDPKRASDLIERHIRETTENVVEHAG 222 Query: 187 QALFADDKPVKGS 199 LF+ P G+ Sbjct: 223 H-LFSGGLPSSGA 234 >ref|YP_002947574.1| transcriptional regulator, GntR family [Variovorax paradoxus S110] gb|ACS22308.1| transcriptional regulator, GntR family [Variovorax paradoxus S110] Length = 238 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/184 (45%), Positives = 113/184 (61%), Gaps = 10/184 (5%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 L + Y S S +REALSRLA EGL+ A++ RGFRVA +S+ DL D+T+ R ++ ALR Sbjct: 47 LQSAYGYSSSPLREALSRLAQEGLVRADERRGFRVAPISEEDLADITRMRIMLDVPALRE 106 Query: 66 SIESGDAAWEARVTAAFRALQASEGKARP----LDQRRYELHSDFHHALLEACGSEWLLR 121 SI GD AWEA V AAF L+ E + LD +LH FH +LL AC S LR Sbjct: 107 SIAHGDDAWEATVLAAFHRLEKVESRLSDGPVILDGEWSQLHRSFHLSLLAACPS---LR 163 Query: 122 LRGM---LFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQHTLETT 178 RG LF++AERYR S + K R +EH+++ +A ++RDA TA A+L +H L T Sbjct: 164 QRGWGASLFDQAERYRRFSARHRKTARRKSSEHKKIMDAALRRDADTACALLEEHILSTQ 223 Query: 179 KALL 182 + ++ Sbjct: 224 RNVI 227 >ref|YP_003692465.1| GntR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH87846.1| transcriptional regulator, GntR family [Starkeya novella DSM 506] Length = 251 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 112/190 (58%), Gaps = 8/190 (4%) Query: 1 LSAARLATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIEC 60 L + LA +Y S A+REAL+RL AE L+ +ED RGFRVA VS++DL+DLTQTR +IE Sbjct: 54 LKISDLAAQYGCSPGAVREALTRLVAEELVVSEDQRGFRVAPVSRSDLLDLTQTRIDIET 113 Query: 61 IALRRSIESGDAAWEAR-VTAAFR----ALQASEGKARPLDQRRYELHSDFHHALLEACG 115 ALR +I G W+A V+ FR + G P R +LH DFH AL+ C Sbjct: 114 AALRHAIAKGGLDWQAGIVSTIFRLSNEPVLDDSGAPNP---RWSKLHQDFHMALVAGCN 170 Query: 116 SEWLLRLRGMLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQHTL 175 S L+RL F +++R+R+L+ Y + R AEH +L +AV+ RDA A +L H Sbjct: 171 SPRLMRLCLAYFHQSQRFRVLTIRYHERGRSADAEHRELADAVIGRDAERAVRLLADHYN 230 Query: 176 ETTKALLQIE 185 TT ++ ++ Sbjct: 231 RTTNLIIDVD 240 >ref|YP_004230831.1| GntR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX57771.1| transcriptional regulator, GntR family [Burkholderia sp. CCGE1001] Length = 247 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 6/199 (3%) Query: 6 LATEYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRR 65 L+ Y + +AIREALSRL +GL+D+ED RGF V VS+ DL DLTQTR E+E ALR Sbjct: 41 LSERYGIGATAIREALSRLVTDGLVDSEDQRGFCVTPVSREDLTDLTQTRVEVEGSALRL 100 Query: 66 SIESGDAAWEARVTAAFRALQASEGKARP-LDQRRYELHSDFHHALLEACGSEWLLRLRG 124 +++ G WE+ V +AF LQ + + P L + +H FH L+ C S W LRL Sbjct: 101 ALKHGGIDWESNVLSAFHRLQRTPVPSSPELHEAWVAVHRQFHETLIAGCASPWTLRLCR 160 Query: 125 MLFERAERYRLLSGNYPKVR-REVHAEHEQLYEAVMKRDAATATAILTQHTLETTKALLQ 183 +L++++ERYR L+ Y + R+ EH +L EA M RDA A +L H ETT +L Sbjct: 161 LLYDQSERYRNLAEQYTSEKNRDAAKEHRELMEAAMARDADRAVQLLAAHFWETTGIIL- 219 Query: 184 IEDQALFADDKPVKGSKKS 202 +A+F DD + K+ Sbjct: 220 ---KAVFNDDATARKVKRG 235 >ref|YP_002822632.1| GntR family transcriptional regulator [Sinorhizobium fredii NGR234] gb|ACP21879.1| probable transcriptional regulator protein, GntR family [Sinorhizobium fredii NGR234] Length = 242 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 100/169 (59%), Gaps = 4/169 (2%) Query: 9 EYSVSLSAIREALSRLAAEGLLDAEDHRGFRVAKVSKADLMDLTQTRCEIECIALRRSIE 68 E+ VSL A+REALS L EGLL A RGF+V VS D+ DLTQ R E+EC LR SI Sbjct: 42 EFGVSLGAVREALSGLEGEGLLHAYAKRGFQVTGVSLEDMFDLTQARIEVECACLRLSIA 101 Query: 69 SGDAAWEARVTAAFRALQASEGKARPLDQRR----YELHSDFHHALLEACGSEWLLRLRG 124 GD AWE++V AA L + + R D E H++FH AL+ C ++ LL +R Sbjct: 102 QGDLAWESQVVAALYRLNGTPREQRGSDDEMSAAWSEAHANFHVALVAGCRNQTLLGIRQ 161 Query: 125 MLFERAERYRLLSGNYPKVRREVHAEHEQLYEAVMKRDAATATAILTQH 173 LF+RAERYR LS R+V AEH+ L +A ++RD A ++ H Sbjct: 162 TLFDRAERYRRLSIPVDADHRDVAAEHDALAQAALQRDPENACRLMETH 210