BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0121.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_299997.1| IclR family transcriptional regulator [Ralstoni... 279 3e-73 ref|YP_001630032.1| transcriptional regulatory protein [Bordetel... 179 3e-43 ref|YP_003592841.1| IclR family transcriptional regulator [Caulo... 174 9e-42 ref|ZP_08867910.1| IclR family transcriptional regulator [Azospi... 173 2e-41 ref|YP_557428.1| IclR family transcriptional regulator [Burkhold... 170 2e-40 ref|YP_718171.1| IclR family transcriptional regulator [Sphingom... 169 5e-40 ref|YP_998180.1| regulatory protein IclR [Verminephrobacter eise... 168 7e-40 ref|YP_980855.1| helix-turn-helix, type 11 domain-containing pro... 166 4e-39 ref|ZP_06686728.1| IclR family transcriptional regulator [Achrom... 161 7e-38 gb|EFV83359.1| hypothetical protein HMPREF0005_01796 [Achromobac... 160 1e-37 >ref|YP_299997.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ65153.1| transcriptional regulator, IclR family [Ralstonia eutropha JMP134] Length = 286 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 142/259 (54%), Positives = 185/259 (71%), Gaps = 1/259 (0%) Query: 1 MATDRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILG 60 MATDR+L VL LF+L+ P WTV++I L VS S+AYRY+ L E+GLVA++G Y+LG Sbjct: 23 MATDRALGVLTLFSLDKPMWTVDEIGEQLGVSSSSAYRYLSNLLELGLVASAGAKRYVLG 82 Query: 61 PAILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQS 120 PAI+QLDRQIQLTDP+L +ARPVM L +AP GSV+LLCRAF D+VLC+HQV KGPQ Sbjct: 83 PAIIQLDRQIQLTDPMLQAARPVMAELVDFAPSGSVMLLCRAFGDSVLCVHQVLGKGPQP 142 Query: 121 LISYERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQL 180 ++SYERGRPM +F GATSRIILA + TR L+ +YE+H ++ ++GL D W FR S+L Sbjct: 143 IVSYERGRPMLMFRGATSRIILAFQQTRMLQAIYEKHHVEIAAAGLGDDWSTFRLGLSRL 202 Query: 181 RKTGYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFVL-PGSAAQEHIPILASVLATGSR 239 R+ GYAVS GEIDP R+GIA +LG+ + GSLS+V+ S Q I L+ +L + Sbjct: 203 RRMGYAVSHGEIDPGRVGIAAPILGEDGRAAGSLSYVVAEASVDQGSIARLSHILMGAAH 262 Query: 240 DIAAGMQGIGGDESVRASA 258 +I+ M G D + A A Sbjct: 263 EISISMLAQGKDGTSAADA 281 >ref|YP_001630032.1| transcriptional regulatory protein [Bordetella petrii DSM 12804] emb|CAP41762.1| transcriptional regulatory protein [Bordetella petrii] Length = 259 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 145/256 (56%), Gaps = 4/256 (1%) Query: 2 ATDRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGP 61 ATD+ S+ LFT E P WTV++ A L +STAYR+ +L + GL+ A G Y+LGP Sbjct: 3 ATDKLFSIFSLFTYERPEWTVDEAAEQLGYPVSTAYRFFKSLSDEGLIVAYAAGRYVLGP 62 Query: 62 AILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQSL 121 AI+QLDRQI+L DPL+ + +M RLA +P LLCR + + V+C+HQ +KG L Sbjct: 63 AIIQLDRQIRLQDPLIKAGSSIMKRLAAESPFDGTFLLCRLYRNQVICVHQ-ESKGFSDL 121 Query: 122 -ISYERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQL 180 +SYERGR MPL GA S+IILAH P R ++ + + + GL WE + ++ Sbjct: 122 TVSYERGRLMPLHRGAASKIILAHLPVRPIRAYQTANAKDVEAVGLGVDWETMKQSLRRI 181 Query: 181 RKTGYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFV-LPGSAAQEHIPILASVLATGSR 239 RK G ++ E+D IGIA L +GSL V L ++ +P ++ L + Sbjct: 182 RKAGICITRAELDNGAIGIAAPLFLIDGSIVGSLGLVLLEEDTNKQLLPAISEELMAAAA 241 Query: 240 DIAAGMQ-GIGGDESV 254 +I A ++ GG V Sbjct: 242 EITARLRTNTGGGHQV 257 >ref|YP_003592841.1| IclR family transcriptional regulator [Caulobacter segnis ATCC 21756] gb|ADG10223.1| transcriptional regulator, IclR family [Caulobacter segnis ATCC 21756] Length = 269 Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 93/215 (43%), Positives = 130/215 (60%) Query: 4 DRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGPAI 63 DR LSVL+LFT+ P WTVE AR L+V STAYRY +L + GL+ G Y++GPAI Sbjct: 5 DRVLSVLQLFTMAEPEWTVEDAARRLEVPTSTAYRYFRSLVDAGLIVNFTAGRYVIGPAI 64 Query: 64 LQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQSLIS 123 ++LDRQ + DPL+L+A+P ++ L V LLCR + TV+C+ Q G IS Sbjct: 65 IELDRQTRHLDPLILAAQPTLSALVEPLETTGVSLLCRIYRRTVICVDQGRPPGRPLEIS 124 Query: 124 YERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQLRKT 183 YERGRPMPLF GA S+ I AH R LKR +E + ++GL WE F+++ ++RK Sbjct: 125 YERGRPMPLFRGAASKSITAHITARTLKRYFEDDIEAAAAAGLGADWETFKAKMREIRKA 184 Query: 184 GYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFVL 218 V+ GE+D +G++ + +GS+ VL Sbjct: 185 EVCVTCGELDQGLLGVSAPIFAPDGDILGSIGVVL 219 >ref|ZP_08867910.1| IclR family transcriptional regulator [Azospirillum amazonense Y2] gb|EGY02498.1| IclR family transcriptional regulator [Azospirillum amazonense Y2] Length = 252 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 135/232 (58%) Query: 4 DRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGPAI 63 DR LSVL LFT+E P WTVE+ AR L +S STAY Y +L E GL+ AS G Y +GPAI Sbjct: 5 DRVLSVLGLFTIEAPEWTVEEAARALGLSNSTAYEYFRSLVEAGLLVASKAGRYSVGPAI 64 Query: 64 LQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQSLIS 123 ++LDR + DPL +A + L ++ LLCR + V+C+ Q + P IS Sbjct: 65 IELDRVTRRFDPLTNAASGTLRDLVADLEVEAIGLLCRIYRLKVMCVDQYVRRPPTFAIS 124 Query: 124 YERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQLRKT 183 YERGRPMPL GA S+IILA+ R L+R Y+ + ++GL DSW+ F+ Q+RK Sbjct: 125 YERGRPMPLGRGAASKIILANLAPRPLRRFYDGDPAAVAAAGLGDSWDAFKRTVRQIRKP 184 Query: 184 GYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFVLPGSAAQEHIPILASVLA 235 G + GE+D +GI+ + G +GS+ V+ + +H L + +A Sbjct: 185 GVLATVGELDAGLMGISAPVFGAGGDVLGSIGLVVSAADFLDHPARLEATMA 236 >ref|YP_557428.1| IclR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE29376.1| transcriptional regulator, IclR family [Burkholderia xenovorans LB400] Length = 317 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 148/249 (59%), Gaps = 5/249 (2%) Query: 2 ATDRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGP 61 +TDR L +L LFT+ETP WTV+ + T ++ +T YRYV +L + G + G G Y LGP Sbjct: 25 STDRILGLLDLFTIETPTWTVDALIETTGLARATMYRYVRSLTDSGFLVPIGKGAYALGP 84 Query: 62 AILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHT-KGPQS 120 +++DRQ++L DPLL +P+M R+ LLCR + VL I++ T + + Sbjct: 85 KFIEIDRQLRLADPLLQIGQPIMTRIEERV--AGAQLLCRYYGLRVLTIYKASTDERLEK 142 Query: 121 LISYERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQL 180 L+S ERGRP PLF GA SR+ILA+ P+ +L+RLY H ++ ++GL DSW FR + + Sbjct: 143 LMSMERGRPFPLFLGAPSRVILANLPSHQLQRLYLYHAQEIAAAGLGDSWVAFRDRMRDV 202 Query: 181 RKTGYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFVLPGS-AAQEHIPILASVLATGSR 239 RK GYA + +ID +GI+ + SL V GS + E ++A ++ + Sbjct: 203 RKAGYAKA-SDIDKALVGISAPIFAAPGVVTASLCLVRLGSEVSAEDERLMADLVIETAA 261 Query: 240 DIAAGMQGI 248 ++++ +QG+ Sbjct: 262 ELSSKLQGV 270 >ref|YP_718171.1| IclR family transcriptional regulator [Sphingomonas sp. KA1] dbj|BAF03459.1| putative transcriptional regulator, IclR family [Sphingomonas sp. KA1] Length = 253 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 130/227 (57%), Gaps = 6/227 (2%) Query: 3 TDRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGPA 62 D++L + LF++E P WTVE A + STAYRY +L E GL+ G Y++GPA Sbjct: 4 VDKALGLAGLFSIEEPQWTVEAAASRTGIPTSTAYRYFRSLNEAGLITDFSAGRYVIGPA 63 Query: 63 ILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQSL- 121 ++ LDR + TDPL+L+A+ M+ L PD SVV+L R F V+C+ Q KG L Sbjct: 64 VIHLDRVARGTDPLVLAAQDAMDNLINRGPDRSVVILARIFDRRVMCVDQ-RRKGYHPLT 122 Query: 122 ISYERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQLR 181 ISYERGRPMPL+ G+ S+IILAH R + R + + + +GL + FR +R Sbjct: 123 ISYERGRPMPLYRGSVSKIILAHLSPRLIVRCFHDDRIDIEEAGLGSDLKSFRRNLRLIR 182 Query: 182 KTGYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFVLPGSAAQEHIP 228 + GY+V+ GE+D IGIA +L LS V+ A+E P Sbjct: 183 RAGYSVTHGEVDKGVIGIAAPILSPNGDVFACLSLVV----AEETTP 225 >ref|YP_998180.1| regulatory protein IclR [Verminephrobacter eiseniae EF01-2] gb|ABM59162.1| transcriptional regulator, IclR family [Verminephrobacter eiseniae EF01-2] Length = 260 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 134/219 (61%), Gaps = 3/219 (1%) Query: 3 TDRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGPA 62 T+R L +L LF LE P T EQ+ VS ++ YR + L G++ Y+LGP Sbjct: 4 TNRMLRILGLFALERPVITPEQLIDEFGVSRASVYRDLGQLTRAGMLERVADRGYVLGPM 63 Query: 63 ILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQSLI 122 +++LDRQ++L DPLL +A+ + +LA G VLLCR VLCIHQV + P + Sbjct: 64 VVELDRQVRLADPLLQAAQELPAKLADET--GGAVLLCRFHGSKVLCIHQVSGRNPALSV 121 Query: 123 SYERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQLRK 182 SY+RGR MPL+ GATS+IILA+ P +L+RL+ + ++GL D + + LR+ Sbjct: 122 SYQRGRAMPLYRGATSKIILAYLPPAQLERLWASERQTAVAAGLPDDYAELTRVLGALRQ 181 Query: 183 TGYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFVLPGS 221 +G+ V+ GEIDPD +G+AVA L D +GSLS VLP + Sbjct: 182 SGHCVTAGEIDPDAVGLAVA-LRDAEHLLGSLSVVLPAA 219 >ref|YP_980855.1| helix-turn-helix, type 11 domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM35934.1| Helix-turn-helix, type 11 domain protein [Polaromonas naphthalenivorans CJ2] Length = 261 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 133/220 (60%), Gaps = 3/220 (1%) Query: 2 ATDRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGP 61 +T+R L +L LF L P T E + TL VS ++ YR + L + G++ Y+LGP Sbjct: 3 STNRMLRILGLFELSRPVITPEWLMETLGVSRASIYRDLGQLAKAGMLERVADRGYVLGP 62 Query: 62 AILQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQSL 121 +++LDRQI+L DPLL +A ++ +LA + G VLLCR V+CI QV+ + P Sbjct: 63 MVIELDRQIRLADPLLEAADDLLGQLA--SETGGAVLLCRLHGSKVMCIQQVNGRNPALS 120 Query: 122 ISYERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQLR 181 +SYERGR MPL+ GATS+IILA P +LK+L+ + L ++GL D + Q + +R Sbjct: 121 VSYERGRAMPLYRGATSKIILASLPPAQLKQLWAAERPALVAAGLPDDYAQLSKLLADMR 180 Query: 182 KTGYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFVLPGS 221 GY + GEIDPD G AV +L D +GSLS V+P + Sbjct: 181 SAGYCFAQGEIDPDAAGFAV-VLKDGEHLLGSLSVVMPAA 219 >ref|ZP_06686728.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF76272.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 278 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 130/214 (60%), Gaps = 3/214 (1%) Query: 4 DRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGPAI 63 DR LS+L LF +T A E + LD S +TAYRY+ +L E GL+A + GG Y+LG I Sbjct: 5 DRMLSILDLFRDDTTAAFQEDVMAHLDCSRATAYRYLKSLTESGLLAPTAGGAYVLGSRI 64 Query: 64 LQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQSLIS 123 ++LDR ++ DPL+ +AR VM R G ++ +LC + D V+C+ + T S Sbjct: 65 IELDRHLRQHDPLMRAARDVM-RATGDELHANL-MLCSYYGDKVMCVDRYWTDNSIE-SS 121 Query: 124 YERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQLRKT 183 Y RGRP P+F GAT++ ILA+ P +L+ L H ++R +GL + W++FR+ +LR Sbjct: 122 YARGRPFPMFRGATAKPILANLPPYQLRNLMLWHAAEIREAGLGEDWDEFRANLKRLRSA 181 Query: 184 GYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFV 217 G VS GE+DP +GI A+ ++ +GSL F+ Sbjct: 182 GVCVSHGEVDPGLMGIGAAIFSPEQKVVGSLVFI 215 >gb|EFV83359.1| hypothetical protein HMPREF0005_01796 [Achromobacter xylosoxidans C54] Length = 279 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/214 (41%), Positives = 131/214 (61%), Gaps = 3/214 (1%) Query: 4 DRSLSVLRLFTLETPAWTVEQIARTLDVSMSTAYRYVLALEEVGLVAASGGGYYILGPAI 63 DR LS+L LF +T A E + L+ S +TAYRY+ +L E GL+A + GG Y+LG I Sbjct: 5 DRMLSILDLFRDDTTAAFQEDVMAHLECSRATAYRYLKSLTESGLLAPTAGGAYVLGSRI 64 Query: 64 LQLDRQIQLTDPLLLSARPVMNRLAGYAPDGSVVLLCRAFADTVLCIHQVHTKGPQSLIS 123 ++LDR ++ DPL+ +AR VM R AG + ++ +LC + D V+C+ + T S Sbjct: 65 IELDRHLRRHDPLMRAARDVM-RAAGDELNANL-MLCSYYGDKVMCVDRYWTDHSIE-SS 121 Query: 124 YERGRPMPLFFGATSRIILAHEPTRRLKRLYERHQDQLRSSGLADSWEQFRSQQSQLRKT 183 Y RGRP P+F GAT++ ILA+ P +L+ L H ++R +GL + W+ FR+ QLR Sbjct: 122 YARGRPFPMFRGATAKPILANLPPYQLRNLMLWHAAEIREAGLGEDWDAFRANLKQLRAA 181 Query: 184 GYAVSFGEIDPDRIGIAVALLGDTRQPIGSLSFV 217 G VS GE+DP +GI A+ ++ +GSL F+ Sbjct: 182 GVCVSHGEVDPGLMGIGSAIFTPDQKVVGSLVFI 215