BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0113.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002547698.1| transcriptional regulator TetR family [Agrob... 142 4e-32 ref|YP_002547694.1| transcriptional regulator TetR family [Agrob... 141 7e-32 ref|YP_001416416.1| TetR family transcriptional regulator [Xanth... 134 6e-30 ref|YP_002892243.1| transcriptional regulator, TetR family [Tolu... 129 3e-28 ref|YP_004553921.1| TetR family transcriptional regulator [Sphin... 125 4e-27 ref|ZP_06889638.1| transcriptional regulator, TetR family [Methy... 125 6e-27 gb|ADT86670.1| transcriptional regulator, TetR family [Vibrio fu... 123 1e-26 ref|YP_003593830.1| TetR family transcriptional regulator [Caulo... 123 2e-26 emb|CBJ40435.1| putative transcription regulator protein, TetR f... 122 3e-26 ref|YP_004752318.1| TetR family transcriptional regulator [Colli... 121 5e-26 >ref|YP_002547698.1| transcriptional regulator TetR family [Agrobacterium vitis S4] gb|ACM38982.1| transcriptional regulator TetR family [Agrobacterium vitis S4] Length = 219 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 113/198 (57%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVV 60 MR K+ +R + + AG+LF + G+ AV M IAA G SK TLYN+F SKE LFEA+V+ Sbjct: 20 MRTKSETKRRQILTIAGNLFREHGFGAVNMAQIAASVGGSKSTLYNHFPSKEALFEAYVI 79 Query: 61 QAGAGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARI 120 +AG L D+ L A LRL+ P+V+A++RL+I EA R+ EL RI Sbjct: 80 EAGREPFAALADSNQAGDNVEKSLTAYARAYLRLLLSPEVLAINRLVIAEAPRFQELGRI 139 Query: 121 FFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTK 180 F++NGP+ T+ + + + ++ + + +AAL FKA+ L E+ +WG I +P Sbjct: 140 FYQNGPRATLDQIEKKLEHLVERQALAIPDIAMAALQFKAVAEAGLYEHCLWGLIDRPND 199 Query: 181 EKLKKISDNAVKVFLDGY 198 +++ + NA L Y Sbjct: 200 AQIETAAKNASTTILTLY 217 >ref|YP_002547694.1| transcriptional regulator TetR family [Agrobacterium vitis S4] gb|ACM38978.1| transcriptional regulator TetR family [Agrobacterium vitis S4] Length = 250 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 77/205 (37%), Positives = 116/205 (56%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVV 60 MRV+T +R ++ AG +F++ GYA V+M A+AAE G SK TLY YF SK +LF AFVV Sbjct: 1 MRVRTQAKRQAIVDIAGSMFLRHGYAQVSMAAVAAEVGGSKGTLYGYFPSKADLFAAFVV 60 Query: 61 QAGAGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARI 120 QAG A L + A + L+ LG+ LRL+ RP +IA+ RL++ EA R +L+ I Sbjct: 61 QAGEDAFAPLMDAIDKEQDAANTLKALGMNYLRLLLRPKIIAITRLVVSEAGRATDLSAI 120 Query: 121 FFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTK 180 +F+ GP+R + ++ SGK+ ++ AA FKA+C L E ++ G P++ Sbjct: 121 YFDIGPRRVLDRFIQIFETMKMSGKLVPPDSAQAAREFKALCEAGLYEPVLLGVAGIPSE 180 Query: 181 EKLKKISDNAVKVFLDGYRIRRMRR 205 ++ V + Y + RR Sbjct: 181 RDMEANVAATVDIMCTRYGPTKSRR 205 >ref|YP_001416416.1| TetR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS66759.1| transcriptional regulator, TetR family [Xanthobacter autotrophicus Py2] Length = 225 Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 113/195 (57%) Query: 8 QRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQAGAGAV 67 + + I+ A +F +G+ +M+ IA + SK T+Y YFSSKEELF+A V + Sbjct: 30 KHRDIIDGARRVFFDKGFDGASMDEIARASQVSKATIYVYFSSKEELFQALVETDRRKSA 89 Query: 68 EELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIFFENGPK 127 E L + + +L+R+G+ + ++ +PD I L R++IG A ++P + R FF+ GP Sbjct: 90 ERLFEFDPDDKDVESLLKRIGMTFMTMMVQPDHIRLMRMVIGAAEKFPAVGRTFFDAGPC 149 Query: 128 RTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTKEKLKKIS 187 LA+++ R + G + + E+AA F +C G+L++ LM+GT QP+ +++ K Sbjct: 150 HGGRRLADLLGRQAELGHLQVDDREMAAFQFFNLCQGNLVKGLMFGTGQQPSPDEIAKTV 209 Query: 188 DNAVKVFLDGYRIRR 202 D AV+VFL Y + R Sbjct: 210 DGAVRVFLAAYGVLR 224 >ref|YP_002892243.1| transcriptional regulator, TetR family [Tolumonas auensis DSM 9187] gb|ACQ92657.1| transcriptional regulator, TetR family [Tolumonas auensis DSM 9187] Length = 199 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 68/199 (34%), Positives = 109/199 (54%), Gaps = 1/199 (0%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVV 60 MRVK+ +R I A FI+QG+ +M IA+ G SK TLYNYFSSKEE+F A + Sbjct: 1 MRVKSEARRQAIIEVAKDAFIRQGFENTSMSEIASRVGGSKATLYNYFSSKEEIFAAVME 60 Query: 61 QAGAGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARI 120 + + K+ ++D R L G+ L + PD++A+ ++ + EA R ++ R Sbjct: 61 SSATEKIANAFKILEDSDDIRTTLTNFGMHYLHSILAPDIMAIRKMALNEADR-SDIGRH 119 Query: 121 FFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTK 180 F+ENGPK+ ++ + + +D + +A + A+H KA+ +L+E G IA P + Sbjct: 120 FYENGPKKGWELISNYLQKQIDQHNLSTCDAGICAMHLKALLEAELVEPYALGVIAPPDE 179 Query: 181 EKLKKISDNAVKVFLDGYR 199 +L I A+ VFL Y+ Sbjct: 180 SQLIAIVSRAITVFLRAYQ 198 >ref|YP_004553921.1| TetR family transcriptional regulator [Sphingobium chlorophenolicum L-1] gb|AEG49415.1| transcriptional regulator, TetR family [Sphingobium chlorophenolicum L-1] Length = 213 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 104/186 (55%) Query: 13 INAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQAGAGAVEELTK 72 ++ A F++ GYAA TM AIAA G SK TL++YF SKEELF A + A L + Sbjct: 23 LDVASRSFLENGYAATTMSAIAAALGGSKGTLWSYFPSKEELFAAVLDNATTAYRARLAE 82 Query: 73 VYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIFFENGPKRTVAA 132 + + L+RLGL +L ++ PD IAL RL++ E+ R+PE+ IF+E+ P T Sbjct: 83 ILDPGGDLEETLRRLGLNILTKITAPDSIALHRLVVAESGRFPEMGAIFYEHAPGTTRRL 142 Query: 133 LAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTKEKLKKISDNAVK 192 +AE + + MD G + + LAA F + ++L+WG I + T E++ + ++ Sbjct: 143 IAEYLEQAMDRGLLRRSDPGLAARTFAMLMLSGCHQSLIWGQIERTTPEQMAADVEYGLE 202 Query: 193 VFLDGY 198 FL Y Sbjct: 203 CFLRAY 208 >ref|ZP_06889638.1| transcriptional regulator, TetR family [Methylosinus trichosporium OB3b] gb|EFH01865.1| transcriptional regulator, TetR family [Methylosinus trichosporium OB3b] Length = 215 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 3/195 (1%) Query: 4 KTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVVQAG 63 +TVE+ + AA LF+ +G+A +MEAIA EAG SK TLY ++ S++ELF A + G Sbjct: 15 RTVER---IVEAAHRLFLSRGFAETSMEAIAQEAGVSKATLYAHYGSRDELFTAVIWSTG 71 Query: 64 AGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARIFFE 123 L A + ++RL A+L L+ PDV+A +R++ EARR+PEL ++F+E Sbjct: 72 DRFSSRLVSGVTGAADLKSKMERLAGAVLDLLLSPDVVATNRIVAAEARRFPELGKLFYE 131 Query: 124 NGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTKEKL 183 NGP R +A LAEV M +G + A HF + GDL M G + + + Sbjct: 132 NGPDRLIARLAEVFETAMAAGSLRRSVPRDVAKHFIGLIRGDLQLRAMLGDESAVSATER 191 Query: 184 KKISDNAVKVFLDGY 198 + V VFL Y Sbjct: 192 NRAIATGVAVFLAAY 206 >gb|ADT86670.1| transcriptional regulator, TetR family [Vibrio furnissii NCTC 11218] Length = 199 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 109/201 (54%), Gaps = 7/201 (3%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVV 60 MRVK+ E+R + A + F QQG+ +M IA E G SK TLYNYFSSKEE+F A + Sbjct: 1 MRVKSEEKRQAILEIAKNSFTQQGFEQTSMSHIAKELGGSKATLYNYFSSKEEIFCAVM- 59 Query: 61 QAGAGAVEELTKVYVEADSARDI---LQRLGLALLRLVSRPDVIALDRLIIGEARRYPEL 117 + A E++ + ++ D R+I L G L V PD +A+ R+ I EA R + Sbjct: 60 --KSSATEQIAQSFLSLDPNREIRTSLLEFGYNFLSSVLTPDAMAIYRMAIHEADR-SSI 116 Query: 118 ARIFFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQ 177 R F+ENGPK L++ I + G + A + +AA+ FKA+ + + IE G I + Sbjct: 117 GRHFYENGPKCGWIHLSDYIDSQVKKGTLKACDTWIAAMQFKALLSAEHIEPFALGAIEK 176 Query: 178 PTKEKLKKISDNAVKVFLDGY 198 P +LK + AV FL Y Sbjct: 177 PKPAELKATTLRAVDTFLTLY 197 >ref|YP_003593830.1| TetR family transcriptional regulator [Caulobacter segnis ATCC 21756] gb|ADG11212.1| transcriptional regulator, TetR family [Caulobacter segnis ATCC 21756] Length = 206 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 116/200 (58%), Gaps = 1/200 (0%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVV 60 MRVK+ +R ++AA +F+++GY A +M ++A G SK TLY+YF+SKE+LF A ++ Sbjct: 1 MRVKSETKRKAILDAAKDVFLERGYVAASMAQVSARVGGSKQTLYSYFASKEDLFVAVML 60 Query: 61 QAGAGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARI 120 + GA VE L V+ +D + ++ LA +R V+ +++A R+I E + +L R+ Sbjct: 61 EKGATQVEPLFDVFQASDDLAEAVRAFALAFVRFVTSDEIVAFRRIIYAEGCK-SDLGRL 119 Query: 121 FFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTK 180 F+ENGP+RT +A+V + M G++ + +A A+C + L+ G++A+ + Sbjct: 120 FYENGPQRTWTRMAQVFEQAMAEGRMRRVDPLIAVDQLHALCEAGPVRRLIEGSLARIAE 179 Query: 181 EKLKKISDNAVKVFLDGYRI 200 E + + A F+ + + Sbjct: 180 EDMTATAMQAADTFIRAFEL 199 >emb|CBJ40435.1| putative transcription regulator protein, TetR family [Ralstonia solanacearum CMR15] Length = 202 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 104/198 (52%), Gaps = 1/198 (0%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELFEAFVV 60 MR KT E+R I+AA H+F + G+ +M IAA +G SK TLYNYFSSKEE+F + Sbjct: 1 MRKKTEEKRQSIIDAALHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 QAGAGAVEELTKVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELARI 120 A + E + D L G L + RP ++A+ RL I E R L R Sbjct: 61 GTAADEIREAFAQLKSSGPVADTLAVFGEHYLNAILRPSLVAIRRLAICEGDR-SNLGRA 119 Query: 121 FFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQPTK 180 F+E+GPKR A LAE + M++G + RN ++AA H A+ + +E + G + Sbjct: 120 FYEHGPKRGWAMLAEFLGEAMEAGALKQRNTDIAAAHLHALYEAECVELCLLGVPVDISP 179 Query: 181 EKLKKISDNAVKVFLDGY 198 ++ + AV VF+ Y Sbjct: 180 GRIAEGVARAVDVFMAAY 197 >ref|YP_004752318.1| TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61495.1| Transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 199 Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/202 (38%), Positives = 111/202 (54%), Gaps = 5/202 (2%) Query: 1 MRVKTVEQRHEFINAAGHLFIQQGYAAVTMEAIAAEAGKSKVTLYNYFSSKEELF-EAFV 59 MR K+ E+R ++ A +F + G+ +M I+A G SK TLYNYFSSKEE+F E + Sbjct: 1 MRKKSEERRQAILDVAAQMFNESGFEGTSMSDISARLGGSKATLYNYFSSKEEIFVEVLL 60 Query: 60 VQAGAGAVEELT-KVYVEADSARDILQRLGLALLRLVSRPDVIALDRLIIGEARRYPELA 118 QAGA +LT VE+D R +LQR G L+ +P++IA RLI+ A R +L Sbjct: 61 RQAGAQF--DLTFASLVESDDLRAVLQRFGAMYLQAKLQPEIIAARRLILYHAER-SQLG 117 Query: 119 RIFFENGPKRTVAALAEVIARCMDSGKIDARNAELAALHFKAICAGDLIENLMWGTIAQP 178 ++ +E GPK+ +AE A M +I +A LAAL F + + IE M G + Sbjct: 118 QVMYERGPKKGTTRMAEFFASAMARKQIREADAWLAALQFHGLMEAEWIEVRMLGVVTAV 177 Query: 179 TKEKLKKISDNAVKVFLDGYRI 200 T K++ + AV F+ Y I Sbjct: 178 TAAKVRDSVERAVDAFMRIYAI 199