BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0081.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedica... 395 e-108 ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Mar... 354 3e-96 ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxyd... 337 4e-91 ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium... 333 5e-90 ref|YP_004753875.1| oligoribonuclease [Collimonas fungivorans Te... 331 3e-89 ref|YP_002006198.1| oligoribonuclease [Cupriavidus taiwanensis L... 312 2e-83 ref|YP_295130.1| oligoribonuclease [Ralstonia eutropha JMP134] >... 310 5e-83 ref|YP_727156.1| oligoribonuclease [Ralstonia eutropha H16] >gi|... 310 7e-83 ref|YP_584720.1| oligoribonuclease [Cupriavidus metallidurans CH... 310 8e-83 ref|YP_004686404.1| oligoribonuclease Orn [Cupriavidus necator N... 310 8e-83 >ref|YP_003774858.1| oligoribonuclease [Herbaspirillum seropedicae SmR1] gb|ADJ62950.1| oligoribonuclease (3'->5' exoribonuclease) protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/189 (100%), Positives = 189/189 (100%) Query: 1 MSQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSD 60 MSQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSD Sbjct: 1 MSQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSD 60 Query: 61 ELLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQD 120 ELLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQD Sbjct: 61 ELLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQD 120 Query: 121 RRFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELK 180 RRFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELK Sbjct: 121 RRFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELK 180 Query: 181 YYREHFIKE 189 YYREHFIKE Sbjct: 181 YYREHFIKE 189 >ref|YP_001352542.1| oligoribonuclease [Janthinobacterium sp. Marseille] gb|ABR89573.1| oligoribonuclease protein [Janthinobacterium sp. Marseille] Length = 195 Score = 354 bits (909), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 161/189 (85%), Positives = 176/189 (93%) Query: 1 MSQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSD 60 + + AAP+RPNE NL+WVDMEMTGLDPDKDRIIEVAVVVTDA LN+LGEGPV AIHQSD Sbjct: 7 LESSSAAPIRPNEFNLVWVDMEMTGLDPDKDRIIEVAVVVTDANLNILGEGPVFAIHQSD 66 Query: 61 ELLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQD 120 E+LDGMDAWNKGTHGRSGLIDR+KASTVTEA+AE +IEFLK+YVP+GKSPMCGN+ICQD Sbjct: 67 EVLDGMDAWNKGTHGRSGLIDRIKASTVTEAEAETALIEFLKKYVPSGKSPMCGNTICQD 126 Query: 121 RRFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELK 180 RRFMVRGMPKLE FFHYRNLDVSTLKELC+RWKPE+ GFKK Q HTALADILESIEEL+ Sbjct: 127 RRFMVRGMPKLEAFFHYRNLDVSTLKELCRRWKPELVNGFKKHQKHTALADILESIEELR 186 Query: 181 YYREHFIKE 189 YYREHFIKE Sbjct: 187 YYREHFIKE 195 >ref|YP_001099190.1| oligoribonuclease [Herminiimonas arsenicoxydans] emb|CAL61063.1| oligoribonuclease [Herminiimonas arsenicoxydans] Length = 198 Score = 337 bits (865), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 155/184 (84%), Positives = 170/184 (92%) Query: 6 AAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDELLDG 65 APVRPNE NL+W+DMEMTGLD D D IIE+AVVVTDAELN++GEGPV AIHQSDE LD Sbjct: 15 TAPVRPNEFNLVWLDMEMTGLDCDNDCIIEIAVVVTDAELNIIGEGPVFAIHQSDETLDK 74 Query: 66 MDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDRRFMV 125 MDAWNKGTHGRSGLI+RVKASTV+EA AE+++IEFLK+YVP GKSPMCGNSICQDRRFM Sbjct: 75 MDAWNKGTHGRSGLIERVKASTVSEAQAEEELIEFLKKYVPKGKSPMCGNSICQDRRFMA 134 Query: 126 RGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYREH 185 RGMPKLE FFHYRNLDVSTLKELCKRWKPE+A+GFKK Q HTALADI+ESIEEL+YYREH Sbjct: 135 RGMPKLEAFFHYRNLDVSTLKELCKRWKPELASGFKKHQKHTALADIIESIEELRYYREH 194 Query: 186 FIKE 189 FIKE Sbjct: 195 FIKE 198 >ref|ZP_08276114.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480] gb|EGF30416.1| Oligoribonuclease [Oxalobacteraceae bacterium IMCC9480] Length = 201 Score = 333 bits (855), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 152/188 (80%), Positives = 169/188 (89%) Query: 1 MSQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSD 60 ++ A A P+R NE NL+W+DMEMTGLDP+ DRIIEVAVVVTD+ LN+LG+GPV AIHQSD Sbjct: 13 IATAIATPLRTNEFNLVWLDMEMTGLDPETDRIIEVAVVVTDSNLNILGQGPVFAIHQSD 72 Query: 61 ELLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQD 120 LDGMD WNKGTHGRSGLI+RVKASTVTEADAE +I FLK YVPAGKSPMCGNSICQD Sbjct: 73 AALDGMDNWNKGTHGRSGLIERVKASTVTEADAEAALIAFLKDYVPAGKSPMCGNSICQD 132 Query: 121 RRFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELK 180 RRFM RGMPKLE FFHYRNLDVSTLKELCKRW+PE+A+GFKK Q HTALADI+ESIEEL+ Sbjct: 133 RRFMARGMPKLEAFFHYRNLDVSTLKELCKRWRPELASGFKKHQKHTALADIIESIEELR 192 Query: 181 YYREHFIK 188 YYREHFI+ Sbjct: 193 YYREHFIQ 200 >ref|YP_004753875.1| oligoribonuclease [Collimonas fungivorans Ter331] gb|AEK63052.1| Oligoribonuclease [Collimonas fungivorans Ter331] Length = 202 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 150/181 (82%), Positives = 168/181 (92%) Query: 9 VRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDELLDGMDA 68 VRPNE NLIWVDMEMTGL+PD DRIIEVAVVVTD +LN+L EGPV AIHQ+DE++DGMDA Sbjct: 22 VRPNEFNLIWVDMEMTGLNPDSDRIIEVAVVVTDPQLNILAEGPVFAIHQADEIMDGMDA 81 Query: 69 WNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDRRFMVRGM 128 WNKGTHGRSGLI++VK STVTE++AE +IEFLK+YVP GKSPMCGN+ICQDRRFM RGM Sbjct: 82 WNKGTHGRSGLIEKVKNSTVTESEAELALIEFLKKYVPNGKSPMCGNTICQDRRFMARGM 141 Query: 129 PKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYREHFIK 188 PKLE FFHYRNLDVSTLKELC+RWKPE+A+GFKK Q HTALADI+ESIEEL+YYREHFIK Sbjct: 142 PKLEAFFHYRNLDVSTLKELCRRWKPELASGFKKHQKHTALADIIESIEELRYYREHFIK 201 Query: 189 E 189 E Sbjct: 202 E 202 >ref|YP_002006198.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424] emb|CAQ70135.1| oligoribonuclease [Cupriavidus taiwanensis LMG 19424] Length = 211 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 145/187 (77%), Positives = 164/187 (87%), Gaps = 1/187 (0%) Query: 2 SQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDE 61 SQA A V+ +E NLIW+DMEMTGL PD DRIIEVAVV+TD+ELN+L EGPVL IHQSD Sbjct: 3 SQAAAKSVK-SENNLIWLDMEMTGLQPDTDRIIEVAVVITDSELNILAEGPVLVIHQSDA 61 Query: 62 LLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDR 121 +LDGMD WNKGTHGRSGLID+VKAST+TE AE +++ FLK++VPAGKSPMCGNSICQDR Sbjct: 62 VLDGMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPAGKSPMCGNSICQDR 121 Query: 122 RFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKY 181 RFM R MPKLE FFHYRNLDVSTLKELCKRW+P I GF KRQ+HTALADILES+EEL+Y Sbjct: 122 RFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGFVKRQLHTALADILESVEELRY 181 Query: 182 YREHFIK 188 YR HFI+ Sbjct: 182 YRTHFIR 188 >ref|YP_295130.1| oligoribonuclease [Ralstonia eutropha JMP134] gb|AAZ60286.1| Exonuclease [Ralstonia eutropha JMP134] Length = 210 Score = 310 bits (795), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 143/187 (76%), Positives = 163/187 (87%), Gaps = 1/187 (0%) Query: 2 SQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDE 61 SQ+ A V+ +E NL+W+DMEMTGL PD DRIIEVAVVVTD+ELN+L EGPVL IHQSD Sbjct: 3 SQSTAKSVK-SENNLVWLDMEMTGLSPDSDRIIEVAVVVTDSELNILAEGPVLVIHQSDA 61 Query: 62 LLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDR 121 +LDGMD WNKGTHGRSGLID+VKAST+TE AE +++ FLK++VPA KSPMCGNSICQDR Sbjct: 62 VLDGMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDR 121 Query: 122 RFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKY 181 RFM R MPKLE FFHYRNLDVSTLKELCKRW+P I GF KRQ+HTALADILES+EEL+Y Sbjct: 122 RFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGFVKRQLHTALADILESVEELRY 181 Query: 182 YREHFIK 188 YR HFI+ Sbjct: 182 YRTHFIR 188 >ref|YP_727156.1| oligoribonuclease [Ralstonia eutropha H16] emb|CAJ93788.1| Oligoribonuclease (3'->5' exoribonuclease) [Ralstonia eutropha H16] Length = 208 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 143/187 (76%), Positives = 163/187 (87%), Gaps = 1/187 (0%) Query: 2 SQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDE 61 SQA A V+ +E NLIW+DMEMTGL PD DRIIE+A+VVTD+ELN+L EGPVL IHQSD Sbjct: 3 SQATAKSVK-SENNLIWLDMEMTGLQPDTDRIIEIAIVVTDSELNILAEGPVLVIHQSDA 61 Query: 62 LLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDR 121 +LDGMD WNKGTHGRSGLID+VKAST+TE AE +++ FLK++VPA KSPMCGNSICQDR Sbjct: 62 VLDGMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPASKSPMCGNSICQDR 121 Query: 122 RFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKY 181 RFM R MPKLE FFHYRNLDVSTLKELCKRW+P I GF KRQ+HTALADILES+EEL+Y Sbjct: 122 RFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGFIKRQLHTALADILESVEELRY 181 Query: 182 YREHFIK 188 YR HFI+ Sbjct: 182 YRTHFIR 188 >ref|YP_584720.1| oligoribonuclease [Cupriavidus metallidurans CH34] gb|ABF09451.1| oligoribonuclease [Cupriavidus metallidurans CH34] Length = 205 Score = 310 bits (793), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 140/185 (75%), Positives = 161/185 (87%) Query: 4 APAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDELL 63 +P+A +E NL+W+DMEMTGL PD DRIIEVAVVVTD+ELN+L EGPVL IHQ D +L Sbjct: 3 SPSASSVKSENNLVWLDMEMTGLQPDTDRIIEVAVVVTDSELNILAEGPVLVIHQPDAVL 62 Query: 64 DGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDRRF 123 D MD WNKGTHGRSGLI++VKAST+TEA AE +++ FLK++VPA KSPMCGNSICQDRRF Sbjct: 63 DAMDNWNKGTHGRSGLIEKVKASTLTEAQAEAELLAFLKRWVPANKSPMCGNSICQDRRF 122 Query: 124 MVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKYYR 183 M R MPKLE FFHYRNLDVSTLKELCKRW+P I GF KRQ+HTALADILES+EEL+YYR Sbjct: 123 MARYMPKLESFFHYRNLDVSTLKELCKRWEPAIHKGFTKRQLHTALADILESVEELRYYR 182 Query: 184 EHFIK 188 +HFIK Sbjct: 183 QHFIK 187 >ref|YP_004686404.1| oligoribonuclease Orn [Cupriavidus necator N-1] gb|AEI77923.1| oligoribonuclease Orn [Cupriavidus necator N-1] Length = 213 Score = 310 bits (793), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 143/187 (76%), Positives = 163/187 (87%), Gaps = 1/187 (0%) Query: 2 SQAPAAPVRPNEMNLIWVDMEMTGLDPDKDRIIEVAVVVTDAELNVLGEGPVLAIHQSDE 61 SQA A V+ +E NLIW+DMEMTGL PD DRIIE+A+VVTD+ELN+L EGPVL IHQSD Sbjct: 3 SQATAKSVK-SENNLIWLDMEMTGLQPDTDRIIEIAIVVTDSELNILAEGPVLVIHQSDA 61 Query: 62 LLDGMDAWNKGTHGRSGLIDRVKASTVTEADAEKQIIEFLKQYVPAGKSPMCGNSICQDR 121 +LDGMD WNKGTHGRSGLID+VKAST+TE AE +++ FLK++VPA KSPMCGNSICQDR Sbjct: 62 VLDGMDNWNKGTHGRSGLIDKVKASTLTEEQAEAELLAFLKRWVPANKSPMCGNSICQDR 121 Query: 122 RFMVRGMPKLEEFFHYRNLDVSTLKELCKRWKPEIATGFKKRQMHTALADILESIEELKY 181 RFM R MPKLE FFHYRNLDVSTLKELCKRW+P I GF KRQ+HTALADILES+EEL+Y Sbjct: 122 RFMARYMPKLEAFFHYRNLDVSTLKELCKRWEPAIHKGFIKRQLHTALADILESVEELRY 181 Query: 182 YREHFIK 188 YR HFI+ Sbjct: 182 YRTHFIR 188