BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0061.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspiril... 482 e-134 ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Ja... 362 3e-98 ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [He... 358 5e-97 ref|YP_004753904.1| ribosomal RNA small subunit methyltransferas... 336 2e-90 ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase... 329 2e-88 ref|ZP_04579924.1| conserved hypothetical protein [Oxalobacter f... 278 5e-73 ref|ZP_04577777.1| conserved hypothetical protein [Oxalobacter f... 250 1e-64 ref|ZP_06843283.1| protein of unknown function DUF558 [Burkholde... 242 4e-62 ref|YP_560424.1| hypothetical protein Bxe_A0561 [Burkholderia xe... 241 6e-62 ref|ZP_02886508.1| protein of unknown function DUF558 [Burkholde... 239 2e-61 >ref|YP_003774838.1| hypothetical protein Hsero_1414 [Herbaspirillum seropedicae SmR1] gb|ADJ62930.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 241 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 239/241 (99%), Positives = 240/241 (99%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGD ITLFNGEGGEYTATLSA+EKKRAH Sbjct: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDAITLFNGEGGEYTATLSAVEKKRAH 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER Sbjct: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA Sbjct: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 Query: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE Sbjct: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 Query: 241 L 241 L Sbjct: 241 L 241 >ref|YP_001352520.1| 16S ribosomal RNA methyltransferase RsmE [Janthinobacterium sp. Marseille] gb|ABR89776.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 241 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 170/241 (70%), Positives = 202/241 (83%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 MPRF+ PQ L IG+ + LP+ +AHHI V+RL GD ITLFNGEGGEYTAT++ IEKKR Sbjct: 1 MPRFYCPQPLAIGAVITLPDHVAHHIQVVRLGSGDHITLFNGEGGEYTATITTIEKKRVT 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 A++K F+PRE ELPYA+T+AQALPE +KMDWI+EKAVELG A+QPLA+QRCVVRLS ER Sbjct: 61 AEIKLFTPREVELPYAVTVAQALPEASKMDWIIEKAVELGVHAIQPLASQRCVVRLSAER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 A KK HWQG+I AA+EQ GRNRL L E +F +W+ Q DLH+RILLSPR + LS WA Sbjct: 121 AAKKMQHWQGVIVAASEQSGRNRLAALAEPVDFNQWVQQKDLHKRILLSPRAEQSLSDWA 180 Query: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RHHPPQ+V L++GPEGGF+D+EE+LA AQGALMLSMG RVLRTETAGL+ALAALNAVWGE Sbjct: 181 RHHPPQSVALMIGPEGGFTDKEEDLALAQGALMLSMGPRVLRTETAGLSALAALNAVWGE 240 Query: 241 L 241 + Sbjct: 241 M 241 >ref|YP_001099162.1| 16S ribosomal RNA methyltransferase RsmE [Herminiimonas arsenicoxydans] emb|CAL61035.1| conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 241 Score = 358 bits (918), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 171/241 (70%), Positives = 197/241 (81%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 MPRF+ PQAL IG+ + LPE +AHHI V+RL GD ITLFNGEGGEYTAT+S IEKKR Sbjct: 1 MPRFYCPQALVIGAVVTLPEHVAHHIQVIRLSAGDAITLFNGEGGEYTATISTIEKKRVT 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 A++K F PRE ELPYA+TLAQALPE +KMDWI+EKAVELGA ALQPLA+QRCVVRLS ER Sbjct: 61 AEIKIFEPREVELPYAITLAQALPEASKMDWIIEKAVELGAHALQPLASQRCVVRLSAER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 A KK HWQGII AA+EQ GRNRL L E +F +W Q DLH RI+LSPR + LS WA Sbjct: 121 AAKKMQHWQGIIIAASEQSGRNRLTTLAEPADFNQWATQQDLHVRIMLSPRAEQSLSDWA 180 Query: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RHHPPQ+V L++GPEGGF+++EE A A GALMLSMG RVLRTETAG+AA+AALNAVWG Sbjct: 181 RHHPPQSVALMIGPEGGFTEKEETQAIANGALMLSMGPRVLRTETAGMAAIAALNAVWGA 240 Query: 241 L 241 + Sbjct: 241 M 241 >ref|YP_004753904.1| ribosomal RNA small subunit methyltransferase E [Collimonas fungivorans Ter331] gb|AEK63081.1| Ribosomal RNA small subunit methyltransferase E [Collimonas fungivorans Ter331] Length = 241 Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 170/241 (70%), Positives = 200/241 (82%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 MPRF++P L IG L LPE +AHH+ VLRL ITLFNGEGGEYTAT+ +IEKKR + Sbjct: 1 MPRFYIPAPLEIGQLLALPEAVAHHLLVLRLGLAAPITLFNGEGGEYTATIVSIEKKRVN 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 ++KTFSPREAELPYA+TLAQALPE +K+DWI+EKAVELG A+QPLAAQRCVVRL+ ER Sbjct: 61 VEIKTFSPREAELPYAITLAQALPESSKLDWIIEKAVELGVAAIQPLAAQRCVVRLNSER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 AEKKQ HWQ +I AAAEQ GRNRLP L ++ F W Q DLH+RILLSPRG + LS WA Sbjct: 121 AEKKQNHWQAVIVAAAEQSGRNRLPTLSTLSPFNDWAQQQDLHKRILLSPRGEQSLSDWA 180 Query: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RH PPQA+ L++GPEGGF++ EE LAC+QGALMLSMG R+LRTETAGLAALAA+NA+WGE Sbjct: 181 RHQPPQALALLIGPEGGFTEAEENLACSQGALMLSMGPRILRTETAGLAALAAINAIWGE 240 Query: 241 L 241 + Sbjct: 241 M 241 >ref|ZP_08273957.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] gb|EGF32575.1| Ribosomal RNA small subunit methyltransferase E [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 162/240 (67%), Positives = 191/240 (79%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 MPRFH P L IG LVLP+ +AHHI V+RLQ G +TLFNG+G EY ATLS +EKKR Sbjct: 1 MPRFHCPLPLAIGDILVLPDNVAHHIQVIRLQAGSMVTLFNGDGNEYVATLSVLEKKRVT 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 ++KT + R ELPYA+TLAQALPE +KMDWI+EKAVELGA +QPL+AQRCVVRLS ER Sbjct: 61 VEIKTCTERSVELPYAITLAQALPEASKMDWIIEKAVELGAAGIQPLSAQRCVVRLSAER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 AEK+Q HWQGII +A+EQ GRNRL L V++F RWIAQ D+H+RILL+PR + L+ WA Sbjct: 121 AEKRQLHWQGIIVSASEQSGRNRLAQLAPVSDFSRWIAQQDIHKRILLTPRADQSLADWA 180 Query: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVWGE 240 RH PPQAVTL++GPEGG SD+EE LA A GA+ LSMG RVLRTETAGLAALA L WG+ Sbjct: 181 RHQPPQAVTLLIGPEGGLSDDEENLAIAHGAIALSMGPRVLRTETAGLAALAMLAGAWGD 240 >ref|ZP_04579924.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gb|EEO30897.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 242 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 130/238 (54%), Positives = 173/238 (72%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 M R L +G+++ LP++ + HI VLRL G+ I LFNGEGGEY+A + ++++ + + Sbjct: 1 MTRLFCDFPLVVGTNIDLPKETSRHIQVLRLTEGNEIVLFNGEGGEYSARIISLDRTKTN 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 ++ + RE ELPY +TLAQALPE KMDWI+EKAVELGA +QPLAAQR VVRL+ +R Sbjct: 61 VKILSRHDREVELPYDITLAQALPEAGKMDWIIEKAVELGAAGIQPLAAQRSVVRLNADR 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 AEK+ A WQ I+ AA+EQCGRN L + E F +I S R++ +PR E LSGWA Sbjct: 121 AEKRLARWQTIVTAASEQCGRNTLMEISEPVAFNTFIDNSGGCLRVMFTPRATETLSGWA 180 Query: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVW 238 R PQA+T+++GPEGGFS EEEELA G + LSMGSR+LRTETAG+AA++A+NA+W Sbjct: 181 RKQAPQAITIMIGPEGGFSPEEEELAIQNGVIPLSMGSRILRTETAGMAAISAINAIW 238 >ref|ZP_04577777.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gb|EEO28739.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 243 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/238 (50%), Positives = 161/238 (67%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 M R L +G+ L LP+ A HI V+RL G+ ITLFNG+GGEY A + + R Sbjct: 1 MTRLFCDFPLAVGACLDLPKDTARHIMVVRLSRGEAITLFNGQGGEYRARILETGRNRVR 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 A++ +FSP E ELPY ++L Q +PE KMDWI+EKA ELG + PLA QR VVR++ +R Sbjct: 61 AEIVSFSPHEVELPYEISLVQGIPEAGKMDWIIEKAAELGVHRIVPLATQRSVVRVNADR 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQSDLHRRILLSPRGAEPLSGWA 180 EK+ A WQ I+ +A+EQCGRNRL +G+ F ++ S +I+ SPR + L+ WA Sbjct: 121 IEKRLARWQSIVVSASEQCGRNRLLAIGQPVNFDAYLQNSPEPSKIMFSPRASHSLASWA 180 Query: 181 RHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALNAVW 238 P A++L++GPEGGFS EEEELA +G LSMG R+LRTETAGLAA++A+NA+W Sbjct: 181 TGQKPHAISLLIGPEGGFSAEEEELARQKGVTFLSMGPRILRTETAGLAAVSAINAIW 238 >ref|ZP_06843283.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1] gb|EFG69018.1| protein of unknown function DUF558 [Burkholderia sp. Ch1-1] Length = 246 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 159/246 (64%), Gaps = 9/246 (3%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 MPRF + L + LP+ + H+ VLRLQPGD+I LFNGEGGEY+A L +E++ A Sbjct: 1 MPRFFVGTPLQSDDIMQLPDDVVRHVLVLRLQPGDSIVLFNGEGGEYSAELVEVERRSAK 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 +++ F E E PY LTLAQ + G KMDW++EKAVELGA+A PL R VVRLSGER Sbjct: 61 VRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLSGER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIA-------QSDLHRRILLSPRGA 173 A+++ AHWQGI+ A+ EQCGRNRLP + V E W+ + DL RILLSPR + Sbjct: 121 AQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDL--RILLSPRAS 178 Query: 174 EPLSGWARHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAA 233 S P VT++VGPEGGFS EE A G + +G RV+RTETAG+A L+A Sbjct: 179 ISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGFTAVGLGPRVMRTETAGIAVLSA 238 Query: 234 LNAVWG 239 L A WG Sbjct: 239 LAAGWG 244 >ref|YP_560424.1| hypothetical protein Bxe_A0561 [Burkholderia xenovorans LB400] gb|ABE32372.1| Conserved hypothetical protein 46 [Burkholderia xenovorans LB400] Length = 251 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 125/246 (50%), Positives = 159/246 (64%), Gaps = 9/246 (3%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 MPRF + L + LP+ + H+ VLRLQPGD+I LFNGEGGEY+A L +E++ A Sbjct: 6 MPRFFVGTPLQSDDIMQLPDDVVRHVLVLRLQPGDSIVLFNGEGGEYSAELVEVERRSAK 65 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 +++ F E E PY LTLAQ + G KMDW++EKAVELGA+A PL R VVRL+GER Sbjct: 66 VRIREFRNIEVEAPYRLTLAQGIAGGDKMDWLIEKAVELGASAFVPLTTTRSVVRLTGER 125 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIA-------QSDLHRRILLSPRGA 173 A+++ AHWQGI+ A+ EQCGRNRLP + V E W+ + DL RILLSPR + Sbjct: 126 AQRRHAHWQGIVRASCEQCGRNRLPEVMPVREIATWLGAMPRTPEEGDL--RILLSPRAS 183 Query: 174 EPLSGWARHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAA 233 S P VT++VGPEGGFS EE A G + +G RV+RTETAG+A L+A Sbjct: 184 ISFSALPAEPPQGRVTVLVGPEGGFSAAEEAAATDHGFTAVGLGPRVMRTETAGIAVLSA 243 Query: 234 LNAVWG 239 L A WG Sbjct: 244 LAAGWG 249 >ref|ZP_02886508.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M] gb|EDT07944.1| protein of unknown function DUF558 [Burkholderia graminis C4D1M] Length = 246 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/244 (50%), Positives = 159/244 (65%), Gaps = 5/244 (2%) Query: 1 MPRFHLPQALGIGSDLVLPEQIAHHIHVLRLQPGDTITLFNGEGGEYTATLSAIEKKRAH 60 MPRF + +L + LP+ + H+ VLRLQ GD+I LFNGEGGEY+A L+AIE++ Sbjct: 1 MPRFFVGTSLSPDDIVQLPDDVVRHVLVLRLQVGDSIVLFNGEGGEYSAELAAIERRAVT 60 Query: 61 AQVKTFSPREAELPYALTLAQALPEGAKMDWIVEKAVELGATALQPLAAQRCVVRLSGER 120 +++ F E E PY LTLAQ + G KMDW++EKAVELGA++ PL R VVRL+GER Sbjct: 61 VKIREFRDIEVETPYRLTLAQGIASGDKMDWLIEKAVELGASSFVPLTTTRSVVRLAGER 120 Query: 121 AEKKQAHWQGIIHAAAEQCGRNRLPHLGEVTEFKRWIAQ-----SDLHRRILLSPRGAEP 175 A ++ AHW+GI+ A+ EQCGRNRLP + V E W++ + RILLSPR + P Sbjct: 121 AARRHAHWEGIVRASCEQCGRNRLPEVMPVREIATWLSAMPRVPAGDELRILLSPRASIP 180 Query: 176 LSGWARHHPPQAVTLVVGPEGGFSDEEEELACAQGALMLSMGSRVLRTETAGLAALAALN 235 S P VT++VGPEGGFS EE A G + +G RVLRTETAG+A L+AL Sbjct: 181 FSALPAAPPKGPVTVLVGPEGGFSAAEEAAAMDHGFQAVGLGPRVLRTETAGMAVLSALA 240 Query: 236 AVWG 239 A WG Sbjct: 241 AGWG 244