BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0052.p (234 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774830.1| transcription regulator protein [Herbaspiril... 474 e-132 ref|YP_004361242.1| transcriptional regulator, GntR family [Burk... 293 2e-77 ref|ZP_06838927.1| transcriptional regulator, GntR family [Burkh... 290 1e-76 ref|YP_553939.1| GntR family transcriptional regulator [Burkhold... 288 6e-76 ref|ZP_03266228.1| transcriptional regulator, GntR family [Burkh... 282 2e-74 ref|YP_001888965.1| GntR family transcriptional regulator [Burkh... 282 3e-74 gb|EGH07117.1| GntR family transcriptional regulator [Pseudomona... 275 5e-72 gb|EGH63355.1| GntR family transcriptional regulator [Pseudomona... 273 1e-71 ref|ZP_03396449.1| transcriptional regulator, GntR family [Pseud... 273 2e-71 ref|NP_791179.1| GntR family transcriptional regulator [Pseudomo... 272 3e-71 >ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62922.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/234 (99%), Positives = 234/234 (100%) Query: 1 MTVTLANALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGY 60 MTVTLANALAEQVYHRLKDDIFSFRLLPGD+FTETEMAQRQGVSRTPLRDALFRLQREGY Sbjct: 1 MTVTLANALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY 60 Query: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA 120 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA Sbjct: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA 120 Query: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH 180 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH Sbjct: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH 180 Query: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAQQ 234 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAQQ Sbjct: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEPEAALAQQ 234 >ref|YP_004361242.1| transcriptional regulator, GntR family [Burkholderia gladioli BSR3] gb|AEA61286.1| transcriptional regulator, GntR family [Burkholderia gladioli BSR3] Length = 245 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 145/226 (64%), Positives = 176/226 (77%), Gaps = 1/226 (0%) Query: 3 VTLANALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLE 62 V AN LAEQVY +LK DIF FRLLPGD F+ET++A+ GVSRTP+RD LFRLQREGYLE Sbjct: 17 VNRANPLAEQVYQQLKSDIFGFRLLPGDRFSETDIARHYGVSRTPMRDGLFRLQREGYLE 76 Query: 63 VGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAE-LTQLNAIWLAEPDAR 121 VGFRRGWKV PIDF +LD LY+LRIVLE+AA+++L + A+ L L+A W P+AR Sbjct: 77 VGFRRGWKVAPIDFAQLDQLYELRIVLELAAIERLTAGAGNWADALATLHATWCVAPEAR 136 Query: 122 QTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHG 181 +TD ++ ++DEAFH LVAA GN EM RVH EVTE+IRIVRRLDFLK R ATYEEH Sbjct: 137 ETDPAEMFRMDEAFHRQLVAATGNAEMLRVHNEVTERIRIVRRLDFLKAHRTSATYEEHA 196 Query: 182 KILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 K+++L+ + EA +LLRAHITQS+LEVRKIT+ MLAEAR + P Sbjct: 197 KMIRLLERGAIAEAGMLLRAHITQSRLEVRKITLSMLAEARGSKLP 242 >ref|ZP_06838927.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gb|EFG73373.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 252 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 142/218 (65%), Positives = 170/218 (77%), Gaps = 1/218 (0%) Query: 11 EQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWK 70 EQVY +LK+DIFSFRL PGD F+E +AQ GVSRTP+RD LFRLQREGYLEVGFRRGWK Sbjct: 32 EQVYQQLKNDIFSFRLFPGDRFSENGIAQHYGVSRTPMRDGLFRLQREGYLEVGFRRGWK 91 Query: 71 VCPIDFDRLDNLYDLRIVLEMAALDKLCSQPE-ASAELTQLNAIWLAEPDARQTDAVKVA 129 V PI+FD+LD LYDLRIVLE+AA++++ + + A A + L A+W EP+ R++D VK+ Sbjct: 92 VSPINFDQLDQLYDLRIVLEVAAVERIGTGGDSAHAAVEALKAVWCVEPELRESDPVKMF 151 Query: 130 QLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQLIAK 189 +DE FH LVAA GN EM RVH EVTE+IRIVRRLDFLK R ATY+EH +L LI + Sbjct: 152 GMDENFHRQLVAATGNAEMLRVHNEVTERIRIVRRLDFLKPHRTSATYDEHATMLNLIER 211 Query: 190 RKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 + TEA ILLRAHITQSKLEVRKIT+ MLA AR + P Sbjct: 212 NRLTEAIILLRAHITQSKLEVRKITLSMLAAARDSKLP 249 >ref|YP_553939.1| GntR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE34589.1| transcriptional regulator, GntR family [Burkholderia xenovorans LB400] Length = 252 Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 140/218 (64%), Positives = 169/218 (77%), Gaps = 1/218 (0%) Query: 11 EQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWK 70 EQVY +LK+DIFSFRL PGD F+E +AQ GVSRTP+RD LFRLQREGYLEVGFRRGWK Sbjct: 32 EQVYQQLKNDIFSFRLFPGDRFSENGIAQHYGVSRTPMRDGLFRLQREGYLEVGFRRGWK 91 Query: 71 VCPIDFDRLDNLYDLRIVLEMAALDKLCSQPE-ASAELTQLNAIWLAEPDARQTDAVKVA 129 V PI+FD+LD LYDLRIVLE+AA++++ + + A A + L A+W EP+ R++D VK+ Sbjct: 92 VSPINFDQLDQLYDLRIVLEVAAVERIGTGGDSAHAAVEALKAVWCVEPELRESDPVKMF 151 Query: 130 QLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQLIAK 189 +DE FH LVAA GN EM RVH EV E+IRIVRRLDFLK R ATY+EH +L LI + Sbjct: 152 GMDENFHRQLVAATGNAEMLRVHNEVAERIRIVRRLDFLKPHRTSATYDEHATMLNLIER 211 Query: 190 RKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 + TEA ILLRAH+TQSKLEVRKIT+ MLA AR + P Sbjct: 212 NRLTEAIILLRAHVTQSKLEVRKITLSMLAAARDSKLP 249 >ref|ZP_03266228.1| transcriptional regulator, GntR family [Burkholderia sp. H160] gb|EEA02167.1| transcriptional regulator, GntR family [Burkholderia sp. H160] Length = 245 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 143/226 (63%), Positives = 166/226 (73%), Gaps = 2/226 (0%) Query: 2 TVTLANALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYL 61 V AN LAEQVY +K DIFSFRL PGD F+E ++AQ GVSRTP+RDALFRL REGYL Sbjct: 19 VVYSANPLAEQVYQLIKQDIFSFRLFPGDRFSENDIAQHYGVSRTPMRDALFRLAREGYL 78 Query: 62 EVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDAR 121 VGFRRGWKVC IDF++LD LYDLRIVLE+AAL++L P + + L AIW + R Sbjct: 79 VVGFRRGWKVCDIDFNQLDQLYDLRIVLELAALERLSGAPHDA--MDALRAIWCVDERER 136 Query: 122 QTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHG 181 ++ + LDE FH LV+AAGN EM RVH EVTE+IRIVRRLDFLK R ATY+EH Sbjct: 137 ESRPATMFVLDEGFHRGLVSAAGNNEMLRVHNEVTERIRIVRRLDFLKAHRTSATYDEHS 196 Query: 182 KILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 +L LI + K EA ILLRAHITQSKLEVRKIT+ MLA AR + P Sbjct: 197 AMLHLIDRGKFGEAAILLRAHITQSKLEVRKITLSMLATARNEKLP 242 >ref|YP_001888965.1| GntR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD19595.1| transcriptional regulator, GntR family [Burkholderia phytofirmans PsJN] Length = 252 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 140/218 (64%), Positives = 169/218 (77%), Gaps = 1/218 (0%) Query: 11 EQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWK 70 EQVY +LK DIFSFRL PGD F+E +AQ GVSRTP+RD LFRLQREGYLEVGFRRGWK Sbjct: 32 EQVYQQLKTDIFSFRLFPGDRFSENGIAQHYGVSRTPMRDGLFRLQREGYLEVGFRRGWK 91 Query: 71 VCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAE-LTQLNAIWLAEPDARQTDAVKVA 129 V PI+FD+LD LYDLRIVLE+AA++++ + +A+ + +L A+W P+ R++D VK+ Sbjct: 92 VSPINFDQLDQLYDLRIVLEVAAVERVGAGGDAAHAAVEELKAVWCVAPELRESDPVKMF 151 Query: 130 QLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQLIAK 189 +DE FH LVAA GN EM RVH EVTE+IRIVRRLDFLK R ATY+EH +L LI + Sbjct: 152 GMDENFHRQLVAATGNMEMLRVHNEVTERIRIVRRLDFLKPHRTSATYDEHSTMLNLIER 211 Query: 190 RKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQEP 227 + TEA ILLRAHITQSKLEVRKIT+ MLA AR + P Sbjct: 212 NRLTEAIILLRAHITQSKLEVRKITLSMLAAARDSKLP 249 >gb|EGH07117.1| GntR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 228 Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 137/220 (62%), Positives = 164/220 (74%) Query: 7 NALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFR 66 NALAE VY RLK +IF F LLP D FTET++A R VSRTP+RDAL+RLQREGYL+V FR Sbjct: 8 NALAEDVYRRLKQEIFDFYLLPYDRFTETQLADRYQVSRTPVRDALYRLQREGYLDVEFR 67 Query: 67 RGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAV 126 RGW V P+DFD++D LYDLRIVLE AA++++C+ + EL L WL PD+RQTD Sbjct: 68 RGWSVRPLDFDQIDQLYDLRIVLECAAIERICASTDVHPELNILREHWLVAPDSRQTDMQ 127 Query: 127 KVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQL 186 VA LDE FHT LVAA+GN EM RVH EVTE+IRIVRRLDF K RI+ TY EH IL Sbjct: 128 VVADLDEQFHTQLVAASGNLEMARVHQEVTERIRIVRRLDFFKSARIEHTYLEHAAILNA 187 Query: 187 IAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQE 226 + RK +A +LLR+H+ SKLEVRK+TI ML +AR+ E Sbjct: 188 LEARKRDDALVLLRSHVEISKLEVRKLTIAMLTDARRRYE 227 >gb|EGH63355.1| GntR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 228 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/220 (62%), Positives = 163/220 (74%) Query: 7 NALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFR 66 NALAE VY RLK +IF F LLP D FTET++A R VSRTP+RDAL+RLQREGYL+V FR Sbjct: 8 NALAEDVYRRLKQEIFDFYLLPYDRFTETQLADRYQVSRTPVRDALYRLQREGYLDVEFR 67 Query: 67 RGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAV 126 RGW V P+DFD++D LYDLRIVLE AA++++C+ + EL L WL PD RQTD Sbjct: 68 RGWSVRPLDFDQIDQLYDLRIVLECAAIERICASTDVHPELNILREHWLVAPDRRQTDMQ 127 Query: 127 KVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQL 186 VA LDE FHT LVAA+GN EM RVH EVTE+IRIVRRLDF K RI+ TY EH IL Sbjct: 128 VVADLDEQFHTQLVAASGNLEMARVHQEVTERIRIVRRLDFFKSARIEHTYLEHAAILNA 187 Query: 187 IAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQE 226 + RK +A +LLR+H+ SKLEVRK+TI ML +AR+ E Sbjct: 188 LEARKRDDALVLLRSHVEISKLEVRKLTISMLTDARRRYE 227 >ref|ZP_03396449.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato T1] ref|ZP_07231856.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato Max13] ref|ZP_07251846.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato K40] ref|ZP_07255932.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gb|EEB60494.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato T1] Length = 228 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 137/220 (62%), Positives = 164/220 (74%) Query: 7 NALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFR 66 NALAE VY RLK +IF F LLP D FTET++A R VSRTP+RDAL+RLQREGYL+V FR Sbjct: 8 NALAEDVYRRLKQEIFDFYLLPYDRFTETQLADRYQVSRTPVRDALYRLQREGYLDVEFR 67 Query: 67 RGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAV 126 RGW V P+DF+++D LYDLRIVLE AA++++C+ +A EL L WL PD RQTD Sbjct: 68 RGWSVRPLDFEQIDQLYDLRIVLECAAIERICASTDAHPELNVLRDHWLVAPDRRQTDMQ 127 Query: 127 KVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQL 186 VA LDE FHT LVAA+GN EM RVH EVTE+IRIVRRLDF K RI+ TY EH IL Sbjct: 128 VVADLDEQFHTQLVAASGNLEMARVHQEVTERIRIVRRLDFFKSARIEHTYLEHAAILNA 187 Query: 187 IAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQE 226 + RK +A +LLR+H+ SKLEVRK+TI ML +AR+ E Sbjct: 188 LEARKRDDALVLLRSHVEISKLEVRKLTISMLTDARRRYE 227 >ref|NP_791179.1| GntR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO54874.1| transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000] gb|EGH95205.1| transcriptional regulator, GntR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 228 Score = 272 bits (696), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 137/220 (62%), Positives = 164/220 (74%) Query: 7 NALAEQVYHRLKDDIFSFRLLPGDHFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFR 66 NALAE VY RLK +IF F LLP D FTET++A R VSRTP+RDAL+RLQREGYL+V FR Sbjct: 8 NALAEDVYRRLKQEIFDFYLLPYDRFTETQLADRYQVSRTPVRDALYRLQREGYLDVEFR 67 Query: 67 RGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDARQTDAV 126 RGW V P+DF+++D LYDLRIVLE AA++++C+ +A EL L WL PD RQTD Sbjct: 68 RGWSVRPLDFEQIDQLYDLRIVLECAAIERICASTDAHPELDVLRDHWLVAPDRRQTDMQ 127 Query: 127 KVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEHGKILQL 186 VA LDE FHT LVAA+GN EM RVH EVTE+IRIVRRLDF K RI+ TY EH IL Sbjct: 128 VVADLDEQFHTQLVAASGNLEMARVHQEVTERIRIVRRLDFFKSARIEHTYLEHAAILNA 187 Query: 187 IAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQE 226 + RK +A +LLR+H+ SKLEVRK+TI ML +AR+ E Sbjct: 188 LEARKRDDALVLLRSHVEISKLEVRKLTISMLTDARRRYE 227