BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0041.p (188 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774819.1| 16S rRNA uridine-516 pseudouridylate synthas... 379 e-103 ref|YP_001354207.1| pseudouridylate synthase family protein [Jan... 288 3e-76 ref|YP_001100699.1| putative pseudouridylate synthase [Herminiim... 286 1e-75 ref|YP_004753916.1| putative Pseudouridylate synthase [Collimona... 273 1e-71 ref|YP_585038.1| 23S rRNA pseudouridine synthase [Cupriavidus me... 247 5e-64 ref|ZP_08275183.1| putative Pseudouridylate synthase [Oxalobacte... 246 1e-63 ref|YP_002006524.1| 23S rRNA pseudouridine synthase [Cupriavidus... 234 4e-60 ref|YP_004686806.1| ribosomal large subunit pseudouridine syntha... 234 6e-60 ref|YP_157387.1| pseudouridine synthase [Aromatoleum aromaticum ... 229 2e-58 ref|YP_546246.1| ribosomal large subunit pseudouridine synthase ... 227 6e-58 >ref|YP_003774819.1| 16S rRNA uridine-516 pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ62911.1| 16S rRNA uridine-516 pseudouridylate synthase protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/188 (99%), Positives = 188/188 (100%) Query: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI Sbjct: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 Query: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIR 120 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLI+EPGWMWPRNPPIR Sbjct: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIQEPGWMWPRNPPIR 120 Query: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD Sbjct: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 Query: 181 PLELERQG 188 PLELERQG Sbjct: 181 PLELERQG 188 >ref|YP_001354207.1| pseudouridylate synthase family protein [Janthinobacterium sp. Marseille] gb|ABR89276.1| pseudouridylate synthase family protein [Janthinobacterium sp. Marseille] Length = 211 Score = 288 bits (736), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 135/184 (73%), Positives = 153/184 (83%) Query: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 MPLIL NKPFQ M QFS HP R++LAD+IDIPN+YPAGRLDADSEGLLLL DDGKLQHAI Sbjct: 25 MPLILFNKPFQTMCQFSPHPTRKSLADHIDIPNIYPAGRLDADSEGLLLLNDDGKLQHAI 84 Query: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIR 120 +HP RK KTYL QVEG P +AL +LR PLDLGDFVTQ + + + EP W+WPRNPPIR Sbjct: 85 SHPDRKHTKTYLVQVEGVPDADALARLRAPLDLGDFVTQECEVKRVAEPDWLWPRNPPIR 144 Query: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 +R N PTSW+A+T+SEGKNRQVRRMT AVG PTLRLVRIAIGP SL +HP+ PGEWRE+ Sbjct: 145 ERANAPTSWLAITLSEGKNRQVRRMTGAVGYPTLRLVRIAIGPVSLQSHPLWPGEWREIS 204 Query: 181 PLEL 184 EL Sbjct: 205 VAEL 208 >ref|YP_001100699.1| putative pseudouridylate synthase [Herminiimonas arsenicoxydans] emb|CAL62578.1| Ribosomal large subunit pseudouridine synthase E (rRNA-uridine isomerase E) (rRNA pseudouridylate synthase E) [Herminiimonas arsenicoxydans] Length = 186 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 133/184 (72%), Positives = 156/184 (84%) Query: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LIL NKPFQVM QFS HP R +LADY+DIP++YPAGRLDADSEGLLLLTDDGKLQHAI Sbjct: 1 MSLILFNKPFQVMCQFSPHPTRASLADYLDIPDIYPAGRLDADSEGLLLLTDDGKLQHAI 60 Query: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIR 120 +HP K KTYLAQVEG P EAL +LR PL+LGDF+TQG + + ++EP W+WPRNPPIR Sbjct: 61 SHPDHKQTKTYLAQVEGIPHTEALARLRAPLNLGDFITQGCEVKRVQEPDWLWPRNPPIR 120 Query: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 +R PTSW+A+T++EGKNRQVRRMT AVGLPTLRL+RIAIGP SL +HP++PG+WREV Sbjct: 121 ERAQVPTSWLAITLAEGKNRQVRRMTGAVGLPTLRLIRIAIGPISLQSHPLLPGQWREVS 180 Query: 181 PLEL 184 EL Sbjct: 181 AAEL 184 >ref|YP_004753916.1| putative Pseudouridylate synthase [Collimonas fungivorans Ter331] gb|AEK63093.1| putative Pseudouridylate synthase [Collimonas fungivorans Ter331] Length = 197 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/184 (71%), Positives = 155/184 (84%) Query: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LIL NKPFQVM QFSAHP R TLADYI IP++YPAGRLDADSEGLLLLTDDG+LQH I Sbjct: 9 MSLILFNKPFQVMCQFSAHPGRPTLADYIKIPDIYPAGRLDADSEGLLLLTDDGQLQHNI 68 Query: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIR 120 +HP K PKTY+AQVEG P+ L++LR +DLGDF ++ QAR IEEP W+WPR+PPIR Sbjct: 69 SHPAVKQPKTYMAQVEGVPTEVLLERLRHGVDLGDFRSKPCQARQIEEPDWLWPRDPPIR 128 Query: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 QRQ++PTSW+ALT++EGKNRQVRRMTAAVGLPTLRLVR+AIG SL +HP+ PGE +D Sbjct: 129 QRQDKPTSWLALTLTEGKNRQVRRMTAAVGLPTLRLVRVAIGQVSLQSHPLWPGESLAID 188 Query: 181 PLEL 184 P +L Sbjct: 189 PADL 192 >ref|YP_585038.1| 23S rRNA pseudouridine synthase [Cupriavidus metallidurans CH34] gb|ABF09769.1| 23S rRNA pseudouridine synthase [Cupriavidus metallidurans CH34] Length = 214 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 123/180 (68%), Positives = 139/180 (77%) Query: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LI LNKP+Q MSQFSAHP R TLAD +D+P VYPAGRLDADSEGLLLLTDDG LQ I Sbjct: 1 MTLIALNKPYQTMSQFSAHPSRATLADCVDVPGVYPAGRLDADSEGLLLLTDDGALQARI 60 Query: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIR 120 A PR KL KTYLAQVEG P AL LR +DLGDF T ++AR+++EP W+W R+PPIR Sbjct: 61 ADPRHKLVKTYLAQVEGVPDEAALATLRTGVDLGDFKTLPAKARVVDEPAWLWERHPPIR 120 Query: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 R PT+WI L+I EGKNRQVRRMTAAVGLPTLRLVRI+IG L +MPG+W E D Sbjct: 121 YRAAIPTTWIELSIREGKNRQVRRMTAAVGLPTLRLVRISIGNLKLPELGLMPGQWCETD 180 >ref|ZP_08275183.1| putative Pseudouridylate synthase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31346.1| putative Pseudouridylate synthase [Oxalobacteraceae bacterium IMCC9480] Length = 189 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 117/184 (63%), Positives = 143/184 (77%) Query: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LIL NKP+ V+ QFS R+TLAD++ IP++YPAGRLDADSEGL+LLTDDG+LQH I Sbjct: 1 MALILFNKPYLVLCQFSPQAGRRTLADHLAIPDIYPAGRLDADSEGLMLLTDDGRLQHDI 60 Query: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIR 120 + P K PK YL Q+EG P P AL+ LR + LGDF ++ ++ + P W+WPRNPPIR Sbjct: 61 SDPTHKQPKAYLVQIEGIPDPVALNTLRTGVFLGDFTSKAAKVIEVATPAWLWPRNPPIR 120 Query: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 QR PT W+ LTI+EGKNRQVRRMTAAVGLPTLRLVR+AIGP+SL +HP++PGE R VD Sbjct: 121 QRAVTPTRWLLLTITEGKNRQVRRMTAAVGLPTLRLVRVAIGPYSLESHPLLPGESRVVD 180 Query: 181 PLEL 184 EL Sbjct: 181 AAEL 184 >ref|YP_002006524.1| 23S rRNA pseudouridine synthase [Cupriavidus taiwanensis LMG 19424] emb|CAQ70463.1| 23S rRNA pseudouridine synthase [Cupriavidus taiwanensis LMG 19424] Length = 220 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 117/179 (65%), Positives = 134/179 (74%) Query: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LI LNKPF MSQFS HP R TLA + +P VYPAGRLDADSEGLLLLTDDG LQ I Sbjct: 1 MTLIALNKPFGTMSQFSEHPTRPTLASCVSVPGVYPAGRLDADSEGLLLLTDDGVLQARI 60 Query: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIR 120 A PR KL KTYLAQVEG P +AL +LR +DLGDFVT+ ++ R +E P W+WPR+PP+R Sbjct: 61 ADPRHKLEKTYLAQVEGIPDADALARLRAGVDLGDFVTRPAKVRAVEAPDWLWPRHPPVR 120 Query: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREV 179 R PTSW+ L I EGKNRQVRRMTAAVGLPTLRL+R+ IG L + + PGE EV Sbjct: 121 FRAAIPTSWLELKIREGKNRQVRRMTAAVGLPTLRLIRVGIGALDLRSLNLAPGESCEV 179 >ref|YP_004686806.1| ribosomal large subunit pseudouridine synthase E [Cupriavidus necator N-1] gb|AEI78325.1| ribosomal large subunit pseudouridine synthase E [Cupriavidus necator N-1] Length = 226 Score = 234 bits (596), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 120/184 (65%), Positives = 133/184 (72%) Query: 1 MPLILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAI 60 M LI LNKPF MSQFS HP R TLA + +P VYPAGRLDADSEGLLLLTDDG LQ I Sbjct: 1 MTLIALNKPFGTMSQFSEHPTRPTLAACVSMPGVYPAGRLDADSEGLLLLTDDGALQAHI 60 Query: 61 AHPRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIR 120 A PR KL KTYLAQVEG P AL +LR +DLGDFVTQ ++ R IE P W+WPR PP+R Sbjct: 61 ADPRHKLEKTYLAQVEGIPDATALARLRAGVDLGDFVTQPARVRAIEAPDWLWPRQPPVR 120 Query: 121 QRQNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREVD 180 R PT+W+ L I EGKNRQVRRMTAAVG PTLRLVR+ IGP L + PGE EV Sbjct: 121 FRAAIPTAWLELKIREGKNRQVRRMTAAVGFPTLRLVRVGIGPLDLRALGLAPGESCEVF 180 Query: 181 PLEL 184 +L Sbjct: 181 AAQL 184 >ref|YP_157387.1| pseudouridine synthase [Aromatoleum aromaticum EbN1] emb|CAI06486.1| Pseudouridine synthase [Aromatoleum aromaticum EbN1] Length = 230 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/176 (63%), Positives = 132/176 (75%), Gaps = 2/176 (1%) Query: 3 LILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAIAH 62 LILLNKP+ V+ QFS TL ++ +P VYPAGRLD DSEGLLLLTDDG LQH IA Sbjct: 31 LILLNKPYGVICQFSGDGVHVTLKAFVPVPGVYPAGRLDTDSEGLLLLTDDGALQHRIAD 90 Query: 63 PRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIRQR 122 PR KLPKTYLAQVEG+P AL LR LDLGDFVT+ AR + EP W+WPR+PP+R R Sbjct: 91 PRHKLPKTYLAQVEGEPGETALTALRGGLDLGDFVTRPCSARRVAEPDWLWPRDPPVRFR 150 Query: 123 QNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWRE 178 +N PTSW+ + + EGKNRQVRRMTA G PTLRL+R+AIG +SLA + PG+WR Sbjct: 151 KNVPTSWLEIVLHEGKNRQVRRMTAKAGFPTLRLIRVAIGDWSLAG--LAPGQWRS 204 >ref|YP_546246.1| ribosomal large subunit pseudouridine synthase E [Methylobacillus flagellatus KT] gb|ABE50405.1| ribosomal large subunit pseudouridine synthase E [Methylobacillus flagellatus KT] Length = 176 Score = 227 bits (579), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 110/177 (62%), Positives = 135/177 (76%), Gaps = 2/177 (1%) Query: 3 LILLNKPFQVMSQFSAHPERQTLADYIDIPNVYPAGRLDADSEGLLLLTDDGKLQHAIAH 62 LIL NKP+ V+ QFS H + +TL DYI +P VY AGRLD DSEGLL+LTDDG+LQH I+H Sbjct: 2 LILFNKPYGVICQFSPHEKHKTLKDYIAVPGVYAAGRLDTDSEGLLILTDDGRLQHRISH 61 Query: 63 PRRKLPKTYLAQVEGQPSPEALDKLRQPLDLGDFVTQGSQARLIEEPGWMWPRNPPIRQR 122 PR K KTY QVEG PS EAL+ LR +DLGDFVTQ ++ R IEEP +WPR+PPIR+R Sbjct: 62 PRHKEFKTYWVQVEGDPSDEALEPLRHGMDLGDFVTQPAKVRRIEEPAGLWPRHPPIRER 121 Query: 123 QNQPTSWIALTISEGKNRQVRRMTAAVGLPTLRLVRIAIGPFSLATHPVMPGEWREV 179 + PT+W+ + I+EGKNRQVRRMTA G PTLRLVR A+G +L + PGEWR++ Sbjct: 122 KAIPTAWLEVIIAEGKNRQVRRMTAKAGFPTLRLVRYAVGQHTLEG--IAPGEWRQL 176