BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0014.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774795.1| transcription regulator protein [Herbaspiril... 447 e-124 ref|YP_001353280.1| transcriptional regulator [Janthinobacterium... 275 5e-72 gb|EGP45229.1| hypothetical protein AXXA_16876 [Achromobacter xy... 243 2e-62 ref|ZP_05974373.1| putative transcriptional regulator [Providenc... 238 4e-61 ref|YP_003977496.1| hypothetical protein AXYL_01443 [Achromobact... 237 9e-61 ref|ZP_06686323.1| DeoR family transcriptional regulator [Achrom... 235 4e-60 ref|ZP_02958646.1| hypothetical protein PROSTU_00393 [Providenci... 231 5e-59 ref|ZP_06127726.1| putative transcriptional regulator [Providenc... 230 1e-58 gb|EFV82608.1| hypothetical protein HMPREF0005_00418 [Achromobac... 229 2e-58 ref|ZP_03320756.1| hypothetical protein PROVALCAL_03723 [Provide... 229 3e-58 >ref|YP_003774795.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62887.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/223 (99%), Positives = 223/223 (100%) Query: 1 MRPDQAIQNPTAASPSTADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLI 60 MRPDQAIQNPTAASPSTADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLI Sbjct: 1 MRPDQAIQNPTAASPSTADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLI 60 Query: 61 ASRQAAAARAGRPRQDWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREV 120 ASRQAAAARAGRPRQDWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREV Sbjct: 61 ASRQAAAARAGRPRQDWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREV 120 Query: 121 QMRAEYQQHCGRLNSLPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQ 180 QMRAEYQQHCGRLNSLPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQ Sbjct: 121 QMRAEYQQHCGRLNSLPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQ 180 Query: 181 GFCRSELQLFGEVLGEQAEITREEHLLADGRRCVYRITALASG 223 GFCRSELQLFGEVLGEQAEITREEHLLA+GRRCVYRITALASG Sbjct: 181 GFCRSELQLFGEVLGEQAEITREEHLLAEGRRCVYRITALASG 223 >ref|YP_001353280.1| transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR88594.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 216 Score = 275 bits (702), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 132/211 (62%), Positives = 165/211 (78%), Gaps = 1/211 (0%) Query: 9 NPTAASPSTADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASRQAAAA 68 N +T +R+LL +KT+GP S +ELA EL M+AEAARQQ+QKL GLIA +Q A+ Sbjct: 6 NYFENKDATHERMLLLIKTKGPISTAELAQELNMTAEAARQQVQKLMTAGLIAGQQEAST 65 Query: 69 RAGRPRQDWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQ 128 GRPRQ+W LT AG+ARFPDTHAQLTVQL+GS+RQLFG+ GL+++I QRE + R Y Q Sbjct: 66 GVGRPRQNWVLTEAGYARFPDTHAQLTVQLLGSVRQLFGEEGLERMISQREEETRVVYLQ 125 Query: 129 HCGRLNSLPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQ 188 C L +L+ LAE+RSAEGYMARVE+ GK WLLIEDHCPIC AA++CQGFCRSEL+ Sbjct: 126 ACSS-KKLAERLQSLAEVRSAEGYMARVERDGKDWLLIEDHCPICFAARTCQGFCRSELR 184 Query: 189 LFGEVLGEQAEITREEHLLADGRRCVYRITA 219 LF EV+G++A + RE+HLLAD RCVYRI++ Sbjct: 185 LFQEVVGDEATVIREQHLLADAGRCVYRISS 215 >gb|EGP45229.1| hypothetical protein AXXA_16876 [Achromobacter xylosoxidans AXX-A] Length = 220 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/219 (54%), Positives = 153/219 (69%), Gaps = 2/219 (0%) Query: 4 DQAIQNPTAASP-STADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIAS 62 D ++ +P + P ADR+L+ LKTRGP S + +A L+++AEA RQQ+ +L DGL+ S Sbjct: 3 DDSLSHPISWQPHQPADRVLMTLKTRGPQSVAVIAKALDVTAEAVRQQMARLHTDGLVDS 62 Query: 63 RQAAAARAGRPRQDWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQM 122 +A R GRP Q W LTAAG RFPDTHA +TVQ+I ++RQ+FG G+DKLI RE M Sbjct: 63 ESRSAGR-GRPTQIWFLTAAGQRRFPDTHADMTVQMINAVRQVFGDDGVDKLIAVREAAM 121 Query: 123 RAEYQQHCGRLNSLPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGF 182 A YQQ LPR+LE L +RSAEGYMA + + G +L IE+HCPICAAAQ+C GF Sbjct: 122 LATYQQALADAGDLPRRLESLVRVRSAEGYMAEMRRDGDDFLFIENHCPICAAAQACMGF 181 Query: 183 CRSELQLFGEVLGEQAEITREEHLLADGRRCVYRITALA 221 CRSEL+LF +VLG Q + REEH+L RRC YR++A A Sbjct: 182 CRSELELFRQVLGPQVRVEREEHILLGARRCAYRVSARA 220 >ref|ZP_05974373.1| putative transcriptional regulator [Providencia rustigianii DSM 4541] gb|EFB70664.1| putative transcriptional regulator [Providencia rustigianii DSM 4541] Length = 223 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 114/202 (56%), Positives = 148/202 (73%), Gaps = 2/202 (0%) Query: 18 ADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASRQAAA-ARAGRPRQD 76 D++L +KT+GP S S +A +L ++ EAARQ +QKL GL+ Q AA + AGRPRQ+ Sbjct: 17 VDKVLFCIKTKGPISTSVIANDLNLTGEAARQHVQKLTSLGLVEGVQCAAQSGAGRPRQN 76 Query: 77 WELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQHCGRLNSL 136 W LT GH RFPDTHAQL +QLI S+R +FG GL+KLIEQRE + R +Y C L L Sbjct: 77 WVLTELGHQRFPDTHAQLALQLIDSVRTIFGDDGLEKLIEQREAESRTKYLARCKNL-PL 135 Query: 137 PRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQLFGEVLGE 196 ++L +LAE+RS EGYMA+VE+ G WL IE+HCPICAAA +CQ FCRSEL LF +V+GE Sbjct: 136 AQRLAELAEVRSEEGYMAKVEQDGDSWLFIENHCPICAAATACQNFCRSELALFRDVVGE 195 Query: 197 QAEITREEHLLADGRRCVYRIT 218 +A++ RE++LL RCVYR+T Sbjct: 196 EAQVDREQYLLDGAGRCVYRVT 217 >ref|YP_003977496.1| hypothetical protein AXYL_01443 [Achromobacter xylosoxidans A8] gb|ADP14781.1| hypothetical protein AXYL_01443 [Achromobacter xylosoxidans A8] Length = 218 Score = 237 bits (605), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 114/209 (54%), Positives = 151/209 (72%), Gaps = 1/209 (0%) Query: 9 NPTAASPSTADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASRQAAAA 68 +P A ADR+L+ LKTRGP S + +A ++++AEA RQQ+ +L +GL+ S +A Sbjct: 7 HPVAWEHQPADRVLMALKTRGPQSVAVIAKAMDVTAEAVRQQMTRLHAEGLVDSESHSAG 66 Query: 69 RAGRPRQDWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQ 128 R GRP Q W LTAAGH RFPDTHA++TVQ+IG+IRQ FG+ G++KLIE RE M + Y+Q Sbjct: 67 R-GRPTQIWFLTAAGHGRFPDTHAEMTVQMIGAIRQAFGEEGVEKLIEVREAAMLSGYRQ 125 Query: 129 HCGRLNSLPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQ 188 SL +LE+L E+RSAEGYMA + K G +L IE+HCPIC+AA++C GFCRSEL+ Sbjct: 126 AMQGARSLKERLERLVEVRSAEGYMAELRKDGPDYLFIENHCPICSAAKACMGFCRSELE 185 Query: 189 LFGEVLGEQAEITREEHLLADGRRCVYRI 217 LF +VLG + + REEH+L RRC YRI Sbjct: 186 LFNKVLGAEVRVRREEHILTGARRCAYRI 214 >ref|ZP_06686323.1| DeoR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF76811.1| DeoR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 222 Score = 235 bits (599), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 111/218 (50%), Positives = 153/218 (70%), Gaps = 1/218 (0%) Query: 4 DQAIQNPTAASPSTADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASR 63 D Q T ADR+L+ LKTRGP S + +A ++++AEA RQQ+ +L DGL+ S Sbjct: 3 DSPSQPVTWMPHQPADRVLMTLKTRGPQSVAVIARAMDVTAEAVRQQMTRLHADGLVDSE 62 Query: 64 QAAAARAGRPRQDWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMR 123 +A R GRP Q W LT AGH RFPDTHA++TVQ+IG++RQ+FG+ G+DKLI+ RE M Sbjct: 63 SHSAGR-GRPTQIWFLTDAGHGRFPDTHAEMTVQMIGAVRQVFGEEGVDKLIQAREAAMM 121 Query: 124 AEYQQHCGRLNSLPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFC 183 YQ+ + LP +L++L +LR++EGYMA + G +L IE+HCPIC+AA++C GFC Sbjct: 122 DGYQRAMAGADDLPSRLDRLVQLRASEGYMAEMRADGADFLFIENHCPICSAAKACMGFC 181 Query: 184 RSELQLFGEVLGEQAEITREEHLLADGRRCVYRITALA 221 RSEL LF +VLG ++ REEH+L+ RRC YR+T +A Sbjct: 182 RSELDLFRKVLGPNVQVQREEHILSGARRCAYRVTRVA 219 >ref|ZP_02958646.1| hypothetical protein PROSTU_00393 [Providencia stuartii ATCC 25827] gb|EDU61504.1| hypothetical protein PROSTU_00393 [Providencia stuartii ATCC 25827] Length = 220 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 108/201 (53%), Positives = 143/201 (71%), Gaps = 2/201 (0%) Query: 18 ADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASRQAAA-ARAGRPRQD 76 D++L +KT+GP S + +A +L M+ EAARQ IQKL GL+ Q + AGRPRQ+ Sbjct: 17 VDKVLFCIKTKGPISTAVIAKDLAMTGEAARQHIQKLTSLGLVEGVQCTSQTGAGRPRQN 76 Query: 77 WELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQHCGRLNSL 136 W LTA GH RFPDTHAQLT+QLI S++ +FG GL+KLI QRE +++A+Y CG L + Sbjct: 77 WVLTALGHQRFPDTHAQLTLQLIDSVKNIFGNEGLEKLISQREGEVKAKYLSRCGSLPFV 136 Query: 137 PRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQLFGEVLGE 196 R L+ LA++R+ EGYMA +E+ G WL IE+HCPICAAA CQ FCRSELQLF +++G Sbjct: 137 ER-LQALADVRNEEGYMAHIEQDGNSWLFIENHCPICAAATVCQNFCRSELQLFRDIMGS 195 Query: 197 QAEITREEHLLADGRRCVYRI 217 + RE++LL RCVYR+ Sbjct: 196 DVTVEREQYLLNGAGRCVYRV 216 >ref|ZP_06127726.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gb|EFE51381.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 220 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 109/201 (54%), Positives = 141/201 (70%), Gaps = 2/201 (0%) Query: 18 ADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASRQAAA-ARAGRPRQD 76 D++L +KT+GP S + +A +L M+ EAARQ IQKL GL+ Q + AGRPRQ+ Sbjct: 17 VDKVLFCIKTKGPISTAVIANDLNMTGEAARQHIQKLTSLGLVEGAQCLSQTGAGRPRQN 76 Query: 77 WELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQHCGRLNSL 136 W LT GH RFPDTHAQL +QLI S++ +FG GL+KLI QRE++ R +Y C L L Sbjct: 77 WVLTELGHQRFPDTHAQLALQLINSVQTIFGDEGLEKLISQREMESREKYFARCKNL-PL 135 Query: 137 PRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQLFGEVLGE 196 +LE+LAE+RS EGYMA+VE+ WL IE+HCPICAAA +CQ FCRSEL LF E++G+ Sbjct: 136 AERLEELAEVRSEEGYMAKVEQDDNSWLFIENHCPICAAATACQNFCRSELALFSEIVGD 195 Query: 197 QAEITREEHLLADGRRCVYRI 217 I RE++LL RCVYR+ Sbjct: 196 DGSIEREQYLLNGAGRCVYRV 216 >gb|EFV82608.1| hypothetical protein HMPREF0005_00418 [Achromobacter xylosoxidans C54] Length = 220 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/201 (54%), Positives = 142/201 (70%), Gaps = 1/201 (0%) Query: 18 ADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASRQAAAARAGRPRQDW 77 ADR+L+ LKTRGP S + +A L+++AEA RQQ+ +L DGL+ S +A R GRP Q W Sbjct: 18 ADRVLMTLKTRGPQSVAVIAKALDVTAEAVRQQMARLHADGLVDSESRSAGR-GRPTQIW 76 Query: 78 ELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQHCGRLNSLP 137 LT AGH RFPDTHA +TVQ+I ++RQ+FG G+DKLI RE M A Y+Q L Sbjct: 77 FLTDAGHRRFPDTHADMTVQMINAVRQVFGDEGVDKLISVREAAMLANYRQALQGARDLA 136 Query: 138 RKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQLFGEVLGEQ 197 ++++ L +RSAEGYMA + G +L IE+HCPICAAAQ+C GFCRSEL+LF +VLGE Sbjct: 137 QRVDSLMRVRSAEGYMAETRRDGDDFLFIENHCPICAAAQACMGFCRSELELFRQVLGED 196 Query: 198 AEITREEHLLADGRRCVYRIT 218 + REEH+L RRC YRI+ Sbjct: 197 VRVEREEHILLGARRCAYRIS 217 >ref|ZP_03320756.1| hypothetical protein PROVALCAL_03723 [Providencia alcalifaciens DSM 30120] gb|EEB44372.1| hypothetical protein PROVALCAL_03723 [Providencia alcalifaciens DSM 30120] Length = 224 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 112/202 (55%), Positives = 143/202 (70%), Gaps = 2/202 (0%) Query: 18 ADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASRQAAA-ARAGRPRQD 76 D++L +KT+GP S S +A +L ++ EAARQ +QKL GL+ Q A + AGRPRQ+ Sbjct: 17 VDKVLFCIKTKGPISTSVIADDLNLTGEAARQHVQKLTSLGLVEGVQCTAQSGAGRPRQN 76 Query: 77 WELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQHCGRLNSL 136 W LT GH RFPDTHAQL +QLI S++ +FG++GL+KLIEQRE + R++Y C L L Sbjct: 77 WVLTELGHQRFPDTHAQLALQLIDSVKTIFGESGLEKLIEQREAESRSKYLARCQGL-PL 135 Query: 137 PRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQLFGEVLGE 196 + L LAE+RS EGYMA+VE WL IE+HCPICAAA +CQ FCRSEL LF EVLGE Sbjct: 136 EKCLTALAEVRSEEGYMAKVEHDEDGWLFIENHCPICAAATACQNFCRSELALFREVLGE 195 Query: 197 QAEITREEHLLADGRRCVYRIT 218 + RE++LL RCVYR+T Sbjct: 196 SVHVEREQYLLDGAGRCVYRVT 217