BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0013.p (235 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774794.1| transcription regulator protein [Herbaspiril... 470 e-131 ref|ZP_02886746.1| GntR domain protein [Burkholderia graminis C4... 358 5e-97 ref|YP_546960.1| transcriptional regulator NanR [Polaromonas sp.... 320 2e-85 ref|YP_004688596.1| transcriptional regulator NanR [Cupriavidus ... 302 3e-80 ref|YP_004614266.1| GntR domain-containing protein [Mesorhizobiu... 212 3e-53 ref|YP_001312471.1| transcriptional regulator NanR [Sinorhizobiu... 211 1e-52 ref|YP_003695556.1| GntR family transcriptional regulator [Stark... 209 3e-52 ref|YP_004556368.1| GntR domain-containing protein [Sinorhizobiu... 204 9e-51 ref|NP_436918.1| transcriptional regulator NanR [Sinorhizobium m... 204 9e-51 gb|EGE56346.1| transcriptional regulator NanR [Rhizobium etli CN... 204 1e-50 >ref|YP_003774794.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62886.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 470 bits (1210), Expect = e-131, Method: Compositional matrix adjust. Identities = 234/235 (99%), Positives = 234/235 (99%) Query: 1 MPEQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERS 60 MPEQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERS Sbjct: 1 MPEQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERS 60 Query: 61 GFVEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAA 120 GFVEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAA Sbjct: 61 GFVEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAA 120 Query: 121 RATPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASE 180 RATPEQIERLRQTVT HRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASE Sbjct: 121 RATPEQIERLRQTVTVHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASE 180 Query: 181 FYTPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQQ 235 FYTPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQQ Sbjct: 181 FYTPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQQ 235 >ref|ZP_02886746.1| GntR domain protein [Burkholderia graminis C4D1M] gb|EDT07587.1| GntR domain protein [Burkholderia graminis C4D1M] Length = 235 Score = 358 bits (918), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 181/234 (77%), Positives = 197/234 (84%) Query: 1 MPEQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERS 60 M E IQRRKLYQEV++RLM RI GE G+QLPSER+LME YGVGRPA+REALQ +ERS Sbjct: 1 MAEIIQRRKLYQEVVDRLMERIRSGEIAPGAQLPSERELMEIYGVGRPAIREALQTLERS 60 Query: 61 GFVEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAA 120 G VEI HGERARVV PTA+RLIAQIA GA HLLR+ PDML HLKEARVFLET TARMAA Sbjct: 61 GIVEIVHGERARVVVPTADRLIAQIAGGAMHLLRSHPDMLAHLKEARVFLETGTARMAAE 120 Query: 121 RATPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASE 180 RAT E + RL+ +V HRASMV+L EFIERDMAFHREIA ISGNPIFPSIVESLFRWA E Sbjct: 121 RATEEDVARLQLSVARHRASMVNLEEFIERDMAFHREIALISGNPIFPSIVESLFRWAGE 180 Query: 181 FYTPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQ 234 +Y P+VRAPGAEELTL+EH RIVDAIA DGD AAEAMR HL RANELYR L + Sbjct: 181 YYRPLVRAPGAEELTLSEHQRIVDAIAKHDGDGAAEAMRAHLNRANELYRTLSR 234 >ref|YP_546960.1| transcriptional regulator NanR [Polaromonas sp. JS666] gb|ABE42062.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 237 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 163/230 (70%), Positives = 188/230 (81%) Query: 3 EQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERSGF 62 EQIQRRKLYQEVL+RL+ RI GE P G+ LPSER+LME YGVGRPAVREALQA+ERSG Sbjct: 4 EQIQRRKLYQEVLDRLLERIRSGEIPPGAHLPSERELMEFYGVGRPAVREALQALERSGI 63 Query: 63 VEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAARA 122 VEI HGERARVV PTA RLI Q+A GA+HLL ++PDML+HLK+ARVFLE AR+AA RA Sbjct: 64 VEITHGERARVVIPTAGRLIEQLAGGARHLLHSQPDMLEHLKDARVFLEVGMARVAAERA 123 Query: 123 TPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASEFY 182 T E I RLRQ + HRAS+ + EFI+ DMAFHREIA ISGNPIFP+I+E+LF WA E+Y Sbjct: 124 TDEDIARLRQRLAEHRASVGKVDEFIQLDMAFHREIARISGNPIFPAILEALFGWAIEYY 183 Query: 183 TPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRL 232 P VRAPGAE+LTLAEH R+V+AIA D AA A+R HL RANELYR+L Sbjct: 184 HPFVRAPGAEQLTLAEHARLVEAIATRDPQAAEAAIREHLTRANELYRQL 233 >ref|YP_004688596.1| transcriptional regulator NanR [Cupriavidus necator N-1] gb|AEI82558.1| transcriptional regulator NanR [Cupriavidus necator N-1] Length = 264 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 151/235 (64%), Positives = 183/235 (77%), Gaps = 2/235 (0%) Query: 1 MP--EQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAME 58 MP E IQRR+L+++VL+RL RI GE G QLP+ERDLME YGVGRPA+REALQA+E Sbjct: 23 MPTSEPIQRRRLFEDVLDRLTERIRNGEIAPGEQLPAERDLMEYYGVGRPAIREALQALE 82 Query: 59 RSGFVEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMA 118 R+G +EIAHGERARVV PT +RLI QI AGAQHLLR+ PD L+HLK ARVFLE A++A Sbjct: 83 RAGIIEIAHGERARVVIPTPQRLIQQIGAGAQHLLRSDPDSLEHLKGARVFLECGMAQLA 142 Query: 119 AARATPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWA 178 AA ATP+ I+RL+ + R + D F+ RDMAFH E+A ISGNPIFP+IV++LF WA Sbjct: 143 AANATPDDIQRLQARLEEQRQAKDDSALFLTRDMAFHCELARISGNPIFPAIVQALFEWA 202 Query: 179 SEFYTPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLG 233 E+Y +VRAPGAE LTLAEH R++DA+A+ DGDAA+ AMR HL RAN LYR L Sbjct: 203 REYYRGIVRAPGAEALTLAEHQRVIDAVASHDGDAASRAMREHLTRANALYRTLN 257 >ref|YP_004614266.1| GntR domain-containing protein [Mesorhizobium opportunistum WSM2075] gb|AEH90172.1| GntR domain protein [Mesorhizobium opportunistum WSM2075] Length = 237 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 106/230 (46%), Positives = 151/230 (65%) Query: 3 EQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERSGF 62 E +Q++KLY EVL+RLM I EFP GSQLPSE++LM GVGRP++REA+ +++ G Sbjct: 2 EPVQKKKLYVEVLDRLMAAISTSEFPPGSQLPSEKELMTMIGVGRPSIREAMLTLQQMGL 61 Query: 63 VEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAARA 122 ++I+HGERARV++PT E ++ Q++A +L T L+ LKE R+ LET R+A RA Sbjct: 62 IKISHGERARVINPTPEVIVDQVSAAMVMMLATNSRGLEELKEVRLLLETGLVRIATRRA 121 Query: 123 TPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASEFY 182 T + +ERL +T+ R + D F+ DM FH IA++SGN + ++ + + W S F Sbjct: 122 TAKNLERLAETLRHLRDAKGDQARFVAADMEFHAVIAEMSGNSMIAAVAKGMLEWLSRFK 181 Query: 183 TPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRL 232 +V GAE LT+ EH RI AIA+GD + A+ AM H+ RANELY +L Sbjct: 182 RDLVAVKGAERLTVEEHERIYKAIASGDPEGASVAMAEHIGRANELYSKL 231 >ref|YP_001312471.1| transcriptional regulator NanR [Sinorhizobium medicae WSM419] gb|ABR62538.1| GntR domain protein [Sinorhizobium medicae WSM419] Length = 237 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 109/230 (47%), Positives = 146/230 (63%) Query: 5 IQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERSGFVE 64 I RRKL EV RL I GE G ++PSER LME++ VGRPA+REA+QA+ G +E Sbjct: 8 IVRRKLSDEVFARLKGSIESGELQPGDEMPSERMLMERFQVGRPAIREAMQALANMGLIE 67 Query: 65 IAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAARATP 124 I+HGERA+V+ PTA L+ Q+ A A+ +L D L+HLK AR+F E AR AA+RA Sbjct: 68 ISHGERAKVLQPTARSLLRQVDAAAKIMLAASSDSLEHLKSARIFFERGMAREAASRADA 127 Query: 125 EQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASEFYTP 184 + I L +T+ R+++ D FI DMAFH IA ISGNPI+ ++ E++ W E++T Sbjct: 128 QDIAALEETLKRQRSALEDSDAFIAADMAFHTRIAQISGNPIYTAVSEAMLGWLKEYHTE 187 Query: 185 MVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLGQ 234 M+ G E +TL EH I+D I GD D A +AM HL R+ LY R G+ Sbjct: 188 MLIWTGRENVTLGEHEEIIDCIRRGDPDEAEQAMIRHLERSRTLYARKGR 237 >ref|YP_003695556.1| GntR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH90937.1| GntR domain protein [Starkeya novella DSM 506] Length = 236 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 111/233 (47%), Positives = 144/233 (61%) Query: 1 MPEQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERS 60 + + I RRKL EV +RL I GE G +PSERDLME++GVGRPA+REA+QA+ Sbjct: 4 VSDTIVRRKLSHEVFDRLKTLITSGELGPGDAMPSERDLMERFGVGRPAIREAMQALANI 63 Query: 61 GFVEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAA 120 G + I HGERARV +A L Q+ AQ LL PD L+HLK+AR F E AR AA Sbjct: 64 GLITITHGERARVQQLSARSLFQQVDLSAQILLSASPDSLEHLKQARRFFERGMAREAAQ 123 Query: 121 RATPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASE 180 RAT E I+RLR + ++ + +FI DM FH +IA ISGNPIF ++ ES+ W + Sbjct: 124 RATAEDIKRLRDILDQQAKAVNEPKQFIGLDMRFHTQIAAISGNPIFEAVSESMLSWLRQ 183 Query: 181 FYTPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELYRRLG 233 +YT M+ G E +TL EH +I+D IA D D A M HL R++ L+ R G Sbjct: 184 YYTEMLTWSGRENVTLVEHEQIIDHIANHDPDGAEAIMVKHLDRSSALFTRQG 236 >ref|YP_004556368.1| GntR domain-containing protein [Sinorhizobium meliloti AK83] gb|AEG55488.1| GntR domain protein [Sinorhizobium meliloti AK83] Length = 237 Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 107/227 (47%), Positives = 144/227 (63%) Query: 3 EQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERSGF 62 E I RRKL EV RL I GE G ++PSER LME++ VGRPA+REA+QA+ G Sbjct: 6 EPIIRRKLSDEVFARLKALIETGELQPGDEMPSERMLMERFQVGRPAIREAMQALANMGL 65 Query: 63 VEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAARA 122 +EI+HGERA+V+ PTA L+ Q+ A A+ +L D L+HLK AR+F E AR AA+RA Sbjct: 66 IEISHGERAKVLQPTARSLLRQVDAAAKIMLAASSDSLEHLKSARIFFERGMAREAASRA 125 Query: 123 TPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASEFY 182 I L +T+ +A++ D FI DMAFH IA ISGNPI+ ++ E++ W E++ Sbjct: 126 DAGDIAALEETLKRQQAALEDSDAFIAADMAFHTRIAQISGNPIYTAVSEAMLGWLKEYH 185 Query: 183 TPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELY 229 T M+ G E +TL EH I+D I +G+ D A +AM HL R+ LY Sbjct: 186 TEMLIWTGRENVTLTEHEEIIDCIRSGNPDEAEQAMIRHLERSRTLY 232 >ref|NP_436918.1| transcriptional regulator NanR [Sinorhizobium meliloti 1021] emb|CAC48778.1| putative transcriptional regulator [Sinorhizobium meliloti 1021] Length = 235 Score = 204 bits (519), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 107/227 (47%), Positives = 144/227 (63%) Query: 3 EQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERSGF 62 E I RRKL EV RL I GE G ++PSER LME++ VGRPA+REA+QA+ G Sbjct: 4 EPIIRRKLSDEVFARLKALIETGELQPGDEMPSERMLMERFQVGRPAIREAMQALANMGL 63 Query: 63 VEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAARA 122 +EI+HGERA+V+ PTA L+ Q+ A A+ +L D L+HLK AR+F E AR AA+RA Sbjct: 64 IEISHGERAKVLQPTARSLLRQVDAAAKIMLAASSDSLEHLKSARIFFERGMAREAASRA 123 Query: 123 TPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASEFY 182 I L +T+ +A++ D FI DMAFH IA ISGNPI+ ++ E++ W E++ Sbjct: 124 DAGDIAALEETLKRQQAALEDSDAFIAADMAFHTRIAQISGNPIYTAVSEAMLGWLKEYH 183 Query: 183 TPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELY 229 T M+ G E +TL EH I+D I +G+ D A +AM HL R+ LY Sbjct: 184 TEMLIWTGRENVTLTEHEEIIDCIRSGNPDEAEQAMIRHLERSRTLY 230 >gb|EGE56346.1| transcriptional regulator NanR [Rhizobium etli CNPAF512] Length = 240 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 106/227 (46%), Positives = 142/227 (62%) Query: 3 EQIQRRKLYQEVLERLMNRIHQGEFPAGSQLPSERDLMEQYGVGRPAVREALQAMERSGF 62 EQI RRKL EV +RL I GE G ++PSER LME++GVGRPA+REA+Q++ G Sbjct: 12 EQIVRRKLSDEVFDRLERMITSGELQPGDEMPSERVLMERFGVGRPAIREAMQSLANKGL 71 Query: 63 VEIAHGERARVVDPTAERLIAQIAAGAQHLLRTKPDMLQHLKEARVFLETSTARMAAARA 122 V I+HGERA+V+ TA+ + Q+ A+ +L D L+HLK AR+F E AR AA RA Sbjct: 72 VSISHGERAKVLRLTAKSIFRQVDLTAKIMLSQSADSLEHLKSARIFFERGMAREAAQRA 131 Query: 123 TPEQIERLRQTVTAHRASMVDLGEFIERDMAFHREIADISGNPIFPSIVESLFRWASEFY 182 + I LR + RAS+ EFI+ DM FH IA ISGNPI+ ++ E++ W E++ Sbjct: 132 SANDISDLRDIIERQRASLGRAEEFIDADMEFHTRIAQISGNPIYVAVSEAMLAWLKEYH 191 Query: 183 TPMVRAPGAEELTLAEHTRIVDAIAAGDGDAAAEAMRVHLVRANELY 229 T M+ G E+ TLAEH IVD + A D D + A+ HL R+ LY Sbjct: 192 TEMLIWTGKEKFTLAEHDEIVDRLEANDVDGSETALLKHLERSRALY 238