BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0009.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774790.1| AraC family two-component hybrid sensor/regu... 533 e-149 ref|YP_004350683.1| AraC family two-component hybrid sensor/regu... 285 6e-75 gb|EFV85399.1| two component transcriptional regulator [Achromob... 281 9e-74 gb|EGP42967.1| AraC family two-component hybrid sensor/regulator... 273 2e-71 ref|YP_002909870.1| AraC family two component transcriptional re... 251 8e-65 ref|YP_002909871.1| AraC family two component transcriptional re... 214 7e-54 ref|ZP_02890383.1| two component transcriptional regulator, AraC... 214 2e-53 ref|ZP_02905118.1| two component transcriptional regulator, AraC... 213 3e-53 ref|YP_001815919.1| two component AraC family transcriptional re... 212 6e-53 ref|YP_778076.1| two component AraC family transcriptional regul... 211 6e-53 >ref|YP_003774790.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62882.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 262/262 (100%), Positives = 262/262 (100%) Query: 1 MIYKPLTPLPPGPLSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVR 60 MIYKPLTPLPPGPLSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVR Sbjct: 1 MIYKPLTPLPPGPLSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVR 60 Query: 61 PDLILMDIRMPGYDGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKP 120 PDLILMDIRMPGYDGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKP Sbjct: 61 PDLILMDIRMPGYDGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKP 120 Query: 121 FDFEEVRLRLCIHLRSAARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLS 180 FDFEEVRLRLCIHLRSAARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLS Sbjct: 121 FDFEEVRLRLCIHLRSAARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLS 180 Query: 181 LNGLASAVGTNARRLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYS 240 LNGLASAVGTNARRLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYS Sbjct: 181 LNGLASAVGTNARRLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYS 240 Query: 241 NTANFSTAFRERFGMPPSQFRR 262 NTANFSTAFRERFGMPPSQFRR Sbjct: 241 NTANFSTAFRERFGMPPSQFRR 262 >ref|YP_004350683.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Burkholderia gladioli BSR3] gb|AEA65171.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Burkholderia gladioli BSR3] Length = 268 Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 151/256 (58%), Positives = 183/256 (71%), Gaps = 8/256 (3%) Query: 12 GPLSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMP 71 G L G R+L+VDD +DR LL FL + R+Y+ +DG+DGY KAQ V PDLILMDI MP Sbjct: 10 GHLHGLRVLIVDDNREDRMLLMDFLSQQRCRVYLASDGRDGYGKAQAVLPDLILMDITMP 69 Query: 72 GYDGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLC 131 DGLT+C LLKA+ +TR IP+IFLSAA E+V GL+ GAVDY+TKPF+FEEVRLRL Sbjct: 70 VCDGLTACHLLKADPATRAIPLIFLSAAGMPHERVAGLAAGAVDYVTKPFNFEEVRLRLG 129 Query: 132 IHLRSA-ARSNAPSASTESVEIPHGT----NTFDMVLFQAARKLMLEKLDQTLSLNGLAS 186 IHLR AR +A V++ GT NT DM LF+AARKL+L +LD T L LA Sbjct: 130 IHLRGKLARQ---TADETEVDVASGTGGGANTLDMALFRAARKLLLIQLDDTPVLARLAR 186 Query: 187 AVGTNARRLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSNTANFS 246 AVGTNA RL+ AF+ C G+TVFDFLRE RM+EARRLLSET L++ IA +LGY +NFS Sbjct: 187 AVGTNAHRLNLAFRRCVGMTVFDFLREARMKEARRLLSETALDVQTIASSLGYGTRSNFS 246 Query: 247 TAFRERFGMPPSQFRR 262 TAFR+ FG P R+ Sbjct: 247 TAFRKHFGFAPRALRQ 262 >gb|EFV85399.1| two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 273 Score = 281 bits (718), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 158/258 (61%), Positives = 189/258 (73%), Gaps = 3/258 (1%) Query: 8 PLPPGPLSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMD 67 PL PG L+G R+LVV+D +DR LL FL R+Y+ DG DGYRKAQ V+PD+ILMD Sbjct: 10 PLIPGQLAGLRVLVVEDRPEDRMLLVDFLTSQDCRVYVAEDGNDGYRKAQLVQPDIILMD 69 Query: 68 IRMPGYDGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVR 127 + MP DGL +CRLLKA+ +TR IPVIFL+AA+ E+V GLS GAVDY+ KPFDFEEVR Sbjct: 70 VNMPVCDGLAACRLLKADPATRAIPVIFLTAASLPMERVAGLSAGAVDYVAKPFDFEEVR 129 Query: 128 LRLCIHLRSAARSNAPSAS--TESVEIPHGT-NTFDMVLFQAARKLMLEKLDQTLSLNGL 184 LRL IHLR + SA+ E GT +T D VLF+AARKL+ E+LD T L L Sbjct: 130 LRLLIHLRVTPVAQPASAAGPCEDGAPAAGTGSTLDGVLFRAARKLLRERLDHTPELVAL 189 Query: 185 ASAVGTNARRLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSNTAN 244 A A+GTNARRL+ AF+ CAG TVF+FLREERMREARRLL ET L+I AI+ A+GY N N Sbjct: 190 AQALGTNARRLNQAFRRCAGTTVFEFLREERMREARRLLCETGLDIQAISQAVGYGNRGN 249 Query: 245 FSTAFRERFGMPPSQFRR 262 FSTAFRERFGM P+ R+ Sbjct: 250 FSTAFRERFGMAPTALRQ 267 >gb|EGP42967.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Achromobacter xylosoxidans AXX-A] Length = 276 Score = 273 bits (698), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 154/261 (59%), Positives = 186/261 (71%), Gaps = 7/261 (2%) Query: 8 PLPPGPLSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMD 67 PL PG L+G R+LVV+D +DR LL FL R+Y+ DG DGYRKAQ V+PD+ILMD Sbjct: 11 PLLPGQLAGLRVLVVEDRPEDRMLLVDFLTSQDCRVYVAEDGNDGYRKAQLVQPDIILMD 70 Query: 68 IRMPGYDGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVR 127 + MP DGL +CRLLKA+ +TR IP+IFL+AA E+V GLS GAVDY+ KPFDFEEVR Sbjct: 71 VNMPVCDGLAACRLLKADQATRGIPIIFLTAAALPTERVAGLSAGAVDYVAKPFDFEEVR 130 Query: 128 LRLCIHLRSAARSNAPSASTE------SVEIPHGTNTFDMVLFQAARKLMLEKLDQTLSL 181 LRL IHLR A A + + GT + D VLF+AARKL+ E+LD T L Sbjct: 131 LRLLIHLRVAPIPAPAPAPAAASPEDGTSAVAAGT-SLDGVLFRAARKLLRERLDHTPEL 189 Query: 182 NGLASAVGTNARRLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSN 241 LA A+GTNARRL+ AF+ CAG TVF+FLREERMREARRLL ET L+I AI+ A+G+ N Sbjct: 190 VALAQALGTNARRLNQAFRRCAGTTVFEFLREERMREARRLLCETGLDIQAISQAVGFGN 249 Query: 242 TANFSTAFRERFGMPPSQFRR 262 NFSTAFRERFGM P+ R+ Sbjct: 250 RGNFSTAFRERFGMAPTALRQ 270 >ref|YP_002909870.1| AraC family two component transcriptional regulator [Burkholderia glumae BGR1] gb|ACR32634.1| Two component transcriptional regulator, AraC family [Burkholderia glumae BGR1] Length = 259 Score = 251 bits (641), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 122/246 (49%), Positives = 169/246 (68%) Query: 17 QRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGYDGL 76 R+LVVDD DDR+LL+ FL + G R+++ +DG DG KA+ VRPDLILMDI MP DGL Sbjct: 2 NRVLVVDDHLDDRSLLAEFLRQQGFRVFMASDGLDGLAKARVVRPDLILMDINMPNCDGL 61 Query: 77 TSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIHLRS 136 T+CR LK + +T +P+IFL+A+T EE+V GL GA+DYI KPF FEEVRLR+ IHLR Sbjct: 62 TACRKLKCDPATSAVPLIFLTASTQPEERVAGLEAGAIDYIAKPFHFEEVRLRIAIHLRL 121 Query: 137 AARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLSLNGLASAVGTNARRLS 196 + ++ ++ + D+ LF+ + ++L L + LA+ GT+ RRLS Sbjct: 122 DSIAHDSESNVGIHPLNQEATNIDLALFRQVKAIVLANFADELDVEALAARAGTSPRRLS 181 Query: 197 SAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSNTANFSTAFRERFGMP 256 A K C G+TVFD++REER++E+RRLL E+ +I IA ++GY+N ANF+TAF+ RFG+ Sbjct: 182 LALKRCIGLTVFDYIREERLKESRRLLLESNSDIVTIARSVGYTNGANFATAFKTRFGIS 241 Query: 257 PSQFRR 262 PS RR Sbjct: 242 PSVLRR 247 >ref|YP_002909871.1| AraC family two component transcriptional regulator [Burkholderia glumae BGR1] gb|ACR32635.1| Two component transcriptional regulator, AraC family [Burkholderia glumae BGR1] Length = 260 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 116/250 (46%), Positives = 159/250 (63%), Gaps = 10/250 (4%) Query: 14 LSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGY 73 +SG R+L++DD DDR LL+ + G R+++ DG DG+RKA + PDLILMD+ MP Sbjct: 13 ISGMRMLIIDDNPDDRLLLAEYFGGIGCRVFVACDGHDGFRKALAIIPDLILMDVGMPVC 72 Query: 74 DGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIH 133 DGLT+ RLL++ TR IP+ L+AA E+V GL GA+DY+ KPFD +EV LRL IH Sbjct: 73 DGLTTMRLLQSARDTRAIPICLLTAAGQPAERVQGLRLGAIDYVPKPFDLKEVHLRLSIH 132 Query: 134 LRSA--ARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLSLNGLASAVGTN 191 R+ AR +A + +T D LF+ AR +L +L + S+ LA + TN Sbjct: 133 ARAGRYARGRGIAA--------YPCDTLDARLFRDARCHLLSRLHEASSVPSLARMLSTN 184 Query: 192 ARRLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSNTANFSTAFRE 251 RL+ AFK C G+TV FL E RM+ A LL++TT++I AIA A+GY NFSTA+R+ Sbjct: 185 TLRLNLAFKRCTGMTVSQFLFEARMQYAVSLLTQTTIDIQAIAEAVGYGTRQNFSTAYRK 244 Query: 252 RFGMPPSQFR 261 RFG P++ R Sbjct: 245 RFGASPNESR 254 >ref|ZP_02890383.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria IOP40-10] gb|EDT04045.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria IOP40-10] Length = 277 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/249 (46%), Positives = 157/249 (63%), Gaps = 6/249 (2%) Query: 14 LSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGY 73 L G ILVVDD +D LL+ L R+ + DG Y +AQ V PDLILMD+RMP Sbjct: 17 LVGAHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRM 76 Query: 74 DGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIH 133 DG +CRLL + ST+NIPVI L+AA E+++ GL TGA+DYI KPF+ EV R+ H Sbjct: 77 DGFAACRLLASTPSTQNIPVIILTAAADLEDRIAGLETGALDYIVKPFEPVEVIARIRNH 136 Query: 134 LRSAARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLSLNGLASAVGTNAR 193 L+ A RS P A +P + D L +AA ++L +L +L LA VGT+ + Sbjct: 137 LKRARRSQ-PFA-----HLPELPDHPDAALVRAASDVLLRELRNPPTLEELARQVGTHEK 190 Query: 194 RLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSNTANFSTAFRERF 253 RLS F++ G TVF++LR+ R+R A+ L+ET++ IG IA +G+S NF+TAFRERF Sbjct: 191 RLSRVFRDHLGQTVFEYLRDTRLRAAKHFLAETSMGIGDIAEEIGFSTPGNFATAFRERF 250 Query: 254 GMPPSQFRR 262 G+ PS +RR Sbjct: 251 GITPSDWRR 259 >ref|ZP_02905118.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria MEX-5] gb|EDT43772.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria MEX-5] Length = 277 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 115/249 (46%), Positives = 157/249 (63%), Gaps = 6/249 (2%) Query: 14 LSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGY 73 L G ILVVDD +D LL+ L R+ + DG Y +AQ V PDLILMD+RMP Sbjct: 17 LVGAHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRM 76 Query: 74 DGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIH 133 DG +CRLL + +T+NIPVI L+AA E+++ GL TGA+DYI KPF+ EV R+ H Sbjct: 77 DGFAACRLLASTPATQNIPVIILTAAADLEDRIAGLETGALDYIVKPFEPVEVIARIRNH 136 Query: 134 LRSAARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLSLNGLASAVGTNAR 193 L+ A RS P A +P + D L +AA ++L +L +L LA VGT+ + Sbjct: 137 LKRARRSQ-PFA-----HLPELPDHPDAALVRAASDVLLRELRNPPTLEELARQVGTHEK 190 Query: 194 RLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSNTANFSTAFRERF 253 RLS F++ G TVF++LR+ R+R A+ L+ET++ IG IA +G+S NF+TAFRERF Sbjct: 191 RLSRVFRDHLGQTVFEYLRDTRLRAAKHFLAETSMGIGDIAEEIGFSTPGNFATAFRERF 250 Query: 254 GMPPSQFRR 262 G+ PS +RR Sbjct: 251 GITPSDWRR 259 >ref|YP_001815919.1| two component AraC family transcriptional regulator [Burkholderia ambifaria MC40-6] gb|ACB68366.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria MC40-6] Length = 277 Score = 212 bits (539), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 115/249 (46%), Positives = 157/249 (63%), Gaps = 6/249 (2%) Query: 14 LSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGY 73 L G ILVVDD +D LL+ L R+ + DG Y +AQ V PDLILMD+RMP Sbjct: 17 LVGAHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRM 76 Query: 74 DGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIH 133 DG +CRLL + ST+NIPVI L+AA ++++ GL TGA+DYI KPF+ EV R+ H Sbjct: 77 DGFAACRLLASTPSTQNIPVIILTAAADLDDRIAGLETGALDYIVKPFEPVEVIARIRNH 136 Query: 134 LRSAARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLSLNGLASAVGTNAR 193 L+ A RS P A +P + D L +AA ++L +L +L LA VGT+ + Sbjct: 137 LKRARRSQ-PFA-----HLPDLPDHPDAALVRAASDVLLRELRNPPTLEELARQVGTHEK 190 Query: 194 RLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSNTANFSTAFRERF 253 RLS F++ G TVF++LR+ R+R A+ L+ET++ IG IA +G+S NF+TAFRERF Sbjct: 191 RLSRVFRDHLGQTVFEYLRDTRLRAAKHFLAETSMGIGDIAEEIGFSTPGNFATAFRERF 250 Query: 254 GMPPSQFRR 262 G+ PS +RR Sbjct: 251 GITPSDWRR 259 >ref|YP_778076.1| two component AraC family transcriptional regulator [Burkholderia ambifaria AMMD] gb|ABI91742.1| two component transcriptional regulator, AraC family [Burkholderia ambifaria AMMD] Length = 277 Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 114/249 (45%), Positives = 157/249 (63%), Gaps = 6/249 (2%) Query: 14 LSGQRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGY 73 L G ILVVDD +D LL+ L R+ + DG Y +AQ V PDLILMD+RMP Sbjct: 17 LVGAHILVVDDRPNDLRLLTEILRSARCRISVAFDGLQAYHRAQAVAPDLILMDVRMPRM 76 Query: 74 DGLTSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEVRLRLCIH 133 DG +CRLL + ST+NIP+I L+AA ++++ GL TGA+DYI KPF+ EV R+ H Sbjct: 77 DGFAACRLLASTPSTQNIPIIILTAAADLDDRIAGLETGALDYIVKPFEPVEVIARIRNH 136 Query: 134 LRSAARSNAPSASTESVEIPHGTNTFDMVLFQAARKLMLEKLDQTLSLNGLASAVGTNAR 193 L+ A RS P A +P + D L +AA ++L +L +L LA VGT+ + Sbjct: 137 LKRARRSQ-PFA-----HLPELPDHPDAALVRAASDVLLRELRNPPTLEELARQVGTHEK 190 Query: 194 RLSSAFKNCAGVTVFDFLREERMREARRLLSETTLEIGAIALALGYSNTANFSTAFRERF 253 RLS F++ G TVF++LR+ R+R A+ L+ET++ IG IA +G+S NF+TAFRERF Sbjct: 191 RLSRVFRDHLGQTVFEYLRDTRLRAAKHFLAETSMGIGDIAEEIGFSTPGNFATAFRERF 250 Query: 254 GMPPSQFRR 262 G+ PS +RR Sbjct: 251 GITPSDWRR 259