BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0006.p (596 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774788.1| hypothetical protein Hsero_1364 [Herbaspiril... 1192 0.0 ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspiril... 612 e-173 ref|YP_003375709.1| hypothetical protein XALc_1211 [Xanthomonas ... 532 e-149 ref|ZP_06704658.1| conserved hypothetical protein [Xanthomonas f... 505 e-141 ref|NP_642122.1| hypothetical protein XAC1795 [Xanthomonas axono... 504 e-140 ref|YP_004851392.1| EAL domain-containing protein [Xanthomonas a... 503 e-140 ref|ZP_08184377.1| diguanylate cyclase/phosphodiesterase with GA... 503 e-140 ref|ZP_08186388.1| diguanylate cyclase/phosphodiesterase with GA... 503 e-140 ref|NP_637143.1| hypothetical protein XCC1777 [Xanthomonas campe... 503 e-140 ref|YP_363556.1| putative phosphodiesterase [Xanthomonas campest... 502 e-140 >ref|YP_003774788.1| hypothetical protein Hsero_1364 [Herbaspirillum seropedicae SmR1] gb|ADJ62880.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 606 Score = 1192 bits (3085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/596 (98%), Positives = 589/596 (98%) Query: 1 LLTPPLPLDAAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQW 60 LLTPPLPLDAAE+QRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQW Sbjct: 11 LLTPPLPLDAAEQQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQW 70 Query: 61 FKSRQGLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVL 120 FKSR+GLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFA NPLVLGEPGIRFYAGA L Sbjct: 71 FKSRRGLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFAGNPLVLGEPGIRFYAGAAL 130 Query: 121 RTADGVALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRS 180 RTADGVALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRS Sbjct: 131 RTADGVALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRS 190 Query: 181 RLVAGVQLMQAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKE 240 RLVA VQLMQAH GLAGLDELP+RLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKE Sbjct: 191 RLVADVQLMQAHATGLAGLDELPRRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKE 250 Query: 241 RLCQALGEMALYRIGATSFAYLDRCDRWQAQADRIRQAFAATVEHQGIPHHLEVSVGIVP 300 RLCQALGEMALYRIGATSFAYLDRCDRWQ QADRIRQAFAATVEHQGIPHHLEVSVGIVP Sbjct: 251 RLCQALGEMALYRIGATSFAYLDRCDRWQDQADRIRQAFAATVEHQGIPHHLEVSVGIVP 310 Query: 301 LSQCPDATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLW 360 LSQCPDA ELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLW Sbjct: 311 LSQCPDAAELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLW 370 Query: 361 LEFQPKVSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQ 420 LEFQPKVSLSTGRCAGVEALLRWRHP+HGVISPALFIPLAEKTALIRQVTLWVLQRGIEQ Sbjct: 371 LEFQPKVSLSTGRCAGVEALLRWRHPIHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQ 430 Query: 421 ATAWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEK 480 ATAWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEK Sbjct: 431 ATAWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEK 490 Query: 481 LYGRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPS 540 LYGRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPS Sbjct: 491 LYGRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPS 550 Query: 541 MIHLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWIGARQ 596 MIHLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWIGARQ Sbjct: 551 MIHLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWIGARQ 606 >ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspirillum seropedicae SmR1] gb|ADJ63222.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 311/587 (52%), Positives = 407/587 (69%), Gaps = 10/587 (1%) Query: 12 ERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQWFKSRQGLDAPG 71 E QRLA L YC LDT PD LCD +T+LA +FDVEIALV+LV EHRQWFKSR GL+ Sbjct: 18 ESQRLAQLHGYCALDTPPDKLCDQVTQLACSMFDVEIALVALVDEHRQWFKSRVGLEVSE 77 Query: 72 TPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVLRTADGVALGTL 131 TPR+ SFC HAI MV+ DA QD RF+ + LV G P IRFYAGA L T G++LGTL Sbjct: 78 TPRADSFCNHAIQTRHGMVVTDALQDARFSRHALVTGAPFIRFYAGAPLVTPQGLSLGTL 137 Query: 132 CLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVAGVQLMQA 191 C+I PR F +L +LAAIVM RL+ LR Y+D +T+LPNR+RL+ +++ Sbjct: 138 CIIDSRPRPDFGASQFAQLNQLAAIVMERLEQLRNRGYIDHVTALPNRARLMEVLRVRGH 197 Query: 192 HTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLCQALGEMAL 251 G +G D AAVAVD+C YL DMVKALGWDY EGFL++ L + LG + L Sbjct: 198 ARPGASGAD------AAVAVDICPREYLFDMVKALGWDYAEGFLMEVSRTLRRVLGTLPL 251 Query: 252 YRIGATSFAYLDR---CDRWQAQADRIRQAFAATVEHQGIPHHLEVSVGIVPLSQCPDAT 308 YR+ T+F YLD R + AD I Q F +E QGIPH L++++G++P+ + Sbjct: 252 YRVTTTTFVYLDETAPAQRRRRIAD-IEQRFTPALEFQGIPHLLDIAIGVLPMEEDVSGG 310 Query: 309 ELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLWLEFQPKVS 368 ++V SLLT DV+R +G +E + Q+++F LL+++P AL + D+L L FQPKV Sbjct: 311 DVVRSLLTVIDVSREEGVSPRLFESVHAEKQRYAFWLLAALPMALTTPDELVLHFQPKVR 370 Query: 369 LSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQATAWARRG 428 L G C GVEAL+RW HP+HG I P +FIPLAEKT IRQVT WVL++ + Q W + G Sbjct: 371 LRDGACVGVEALIRWHHPIHGNIPPDVFIPLAEKTGQIRQVTAWVLRQVVAQVARWLKSG 430 Query: 429 VAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEKLYGRIQEI 488 A+PVA N SARDFD+D+L +LL + L+ H++P LIEIEFTE AM+ +P+++ R+Q + Sbjct: 431 RALPVAFNASARDFDSDELRELLAQQLKLHKVPPALIEIEFTEHAMANHPQQVRQRVQAL 490 Query: 489 KRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPSMIHLGQRL 548 + LGVKVAIDDFGAGFSNLSYLK+IPAD +K+D+SFI R+ D +DQ IVPS++HL L Sbjct: 491 RELGVKVAIDDFGAGFSNLSYLKNIPADTMKIDRSFIHRLLDDEADQLIVPSILHLAHNL 550 Query: 549 GFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWIGAR 595 GF+VVAEG+E+E+T +L+HLGCD+GQG+ IARPM A+ W+ R Sbjct: 551 GFSVVAEGLESERTATLLRHLGCDYGQGYAIARPMPLAELEAWLERR 597 >ref|YP_003375709.1| hypothetical protein XALc_1211 [Xanthomonas albilineans GPE PC73] emb|CBA15721.1| hypothetical protein XALc_1211 [Xanthomonas albilineans] Length = 595 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 291/605 (48%), Positives = 378/605 (62%), Gaps = 23/605 (3%) Query: 1 LLTPPLPLDAAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQW 60 + PP LD E RL VL CLLDT D + D+IT+LA R V IA+VSLV E RQW Sbjct: 3 IFPPPTLLD--EPTRLNVLQQLCLLDTPADLVFDLITQLAARHLKVPIAMVSLVDERRQW 60 Query: 61 FKSRQGLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVL 120 FKS+ G+D TPRSQ+FCA+ I + +V+ DAR+D RF D+ LV G P +RFYAGA L Sbjct: 61 FKSKIGVDTAETPRSQAFCAYTIQSTELLVVLDAREDPRFRDSALVTGPPFVRFYAGAPL 120 Query: 121 RTADGVALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRS 180 ADG LG LC++ PR F E + LE L I+M R+D LR ++D LT LPNR Sbjct: 121 LMADGANLGALCVVDTEPRQDFDESSRKTLEDLRDILMIRIDALRNAGFIDPLTQLPNRL 180 Query: 181 RLVAGVQLMQAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKE 240 R + + + L Q AVAVDVC Y +MVKALGW+Y EG+L+ +++ Sbjct: 181 RFNEDLTMWLS-------LQGTQQHNTAVAVDVCGTKYFREMVKALGWEYAEGYLLSSRD 233 Query: 241 RLCQALGEMALYRIGATSFAYL------DRCDRWQAQADRIRQAFAATVEHQGIPHHLEV 294 RL QAL + LYRI T+F ++ D+ +W DR+ AF +EHQGIPH Sbjct: 234 RLVQALDGIPLYRIDTTTFVFVIEGSDEDKLAQW---CDRVCDAFTLAIEHQGIPHVATP 290 Query: 295 SVGIVPLSQCPDATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALL 354 S+G V L A + SL TA D+AR G YE Q+ +F +L+++P AL Sbjct: 291 SLGAVYLDGGLSANHTLRSLTTAVDMARQRGLRWSLYELSHDANQRSAFRILAALPEALS 350 Query: 355 STDQLWLEFQPKVSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVL 414 + QL L +QP+VS+ +G C GVEALLRW HP+ G ++P FIPLAEKTAL+ Q+T WVL Sbjct: 351 AHGQLSLHYQPRVSMHSGACTGVEALLRWEHPLLGAVAPNNFIPLAEKTALMPQITAWVL 410 Query: 415 QRGIEQATAWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAM 474 Q GI QA W +RG V++NVSA D + D + L LL QH + G IEIEFTESAM Sbjct: 411 QTGIAQAALWQQRGHRFAVSLNVSAVDLEQADFITNLRSLLAQHALAPGAIEIEFTESAM 470 Query: 475 SRNPEKLYGRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSD 534 R+P+++ ++Q+I LGVK+AIDDFG G+SNL YLK IPA LK+DQSFI + + SD Sbjct: 471 IRHPQRVAEQLQQISALGVKIAIDDFGTGYSNLGYLKSIPAHALKIDQSFIRTLPASRSD 530 Query: 535 QQIVPSMIHLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAA--DCW--- 589 +VP+MI LG G VVAEG+E+E ++L+ GCD GQG+ IA+PM+AA D W Sbjct: 531 SVLVPAMIRLGHDFGQQVVAEGIESETVYQMLRDWGCDEGQGYWIAKPMSAAALDAWLAT 590 Query: 590 DWIGA 594 W GA Sbjct: 591 PWHGA 595 >ref|ZP_06704658.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gb|EFF43779.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 618 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 282/590 (47%), Positives = 370/590 (62%), Gaps = 10/590 (1%) Query: 6 LPLDAAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQWFKSRQ 65 LP E RL VL CLLD+ PDP+ D + +A R D EIA+VSLV EHRQWFK+R Sbjct: 12 LPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIAVVSLVDEHRQWFKARI 71 Query: 66 GLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVLRTADG 125 GL+A TPRSQ+FCAHAI + MV+PDA+ D RF DNPLVLG P IRFYAGA L+ DG Sbjct: 72 GLEARETPRSQAFCAHAIRSDEVMVVPDAQLDPRFCDNPLVLGPPFIRFYAGAPLKLRDG 131 Query: 126 VALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVAG 185 +GTLC+IG SPR + +LE L + + R++ LR +Y D T LPNRSR Sbjct: 132 HRIGTLCVIGTSPRPGLDQAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRSRFSED 191 Query: 186 VQLMQAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLCQA 245 + L+ D P AVA+DVC Y DMVKALGW+Y +G++ A+ RL Sbjct: 192 LDTW------LSQRDTAPA-TTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAY 244 Query: 246 L-GEMALYRIGATSFAYLDRCD--RWQAQADRIRQAFAATVEHQGIPHHLEVSVGIVPLS 302 L G LYR+ T+F +L + + R A ++ +AF +EHQGIPH S+G V L Sbjct: 245 LPGGTLLYRLDPTTFGFLAQAEGQRLAALCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQ 304 Query: 303 QCPDATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLWLE 362 A + + SL TA D+AR YE+ Q+++F LL+++PAAL S QL L Sbjct: 305 SSYGAADTIRSLTTAVDIARERCLPWSMYERKHDVAQRNTFRLLAALPAALDSASQLRLH 364 Query: 363 FQPKVSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQAT 422 FQP+V L RC GVEALLRW+HP+ G + P+ FIP+AEKTALI ++T WV+ GI QA Sbjct: 365 FQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVIDNGIAQAA 424 Query: 423 AWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEKLY 482 W ++G+ +A+NVSA D D LL R L++H++ +EIEFTESAM R+P+ L Sbjct: 425 RWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLA 484 Query: 483 GRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPSMI 542 ++ I LGV +AIDDFG G+SN SYLK +PA LK+DQSFI + +D+ +VP+MI Sbjct: 485 EQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSQTDRTLVPAMI 544 Query: 543 HLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWI 592 LG LG VVAEG+E+ + L+ GCD GQG+ IA+PM AA W+ Sbjct: 545 QLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMTAAALETWL 594 >ref|NP_642122.1| hypothetical protein XAC1795 [Xanthomonas axonopodis pv. citri str. 306] gb|AAM36658.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 618 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/590 (47%), Positives = 370/590 (62%), Gaps = 10/590 (1%) Query: 6 LPLDAAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQWFKSRQ 65 LP E RL VL CLLD+ PDP+ D + +A R D EIA+VSLV EHRQWFK+R Sbjct: 12 LPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIAVVSLVDEHRQWFKARI 71 Query: 66 GLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVLRTADG 125 GL+A TPRSQ+FCAHAI + MV+PDA+ D RF DNPLVLG P IRFYAGA L+ DG Sbjct: 72 GLEARETPRSQAFCAHAIRSDEVMVVPDAQLDPRFCDNPLVLGPPFIRFYAGAPLKLRDG 131 Query: 126 VALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVAG 185 +GTLC+IG SPR + +LE L + + R++ LR +Y D T LPNRSR Sbjct: 132 HRIGTLCVIGTSPRPGLDQAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRSRFSED 191 Query: 186 VQLMQAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLCQA 245 + L+ D P AVA+DVC Y DMVKALGW+Y +G++ A+ RL Sbjct: 192 LDTW------LSQRDTAPA-TTAVAIDVCGSDYFRDMVKALGWEYADGYIALAQRRLAAY 244 Query: 246 L-GEMALYRIGATSFAYLDRCD--RWQAQADRIRQAFAATVEHQGIPHHLEVSVGIVPLS 302 L G LYR+ T+F +L + + R ++ +AF +EHQGIPH S+G V L Sbjct: 245 LPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVSKAFTEPLEHQGIPHTAVASIGAVSLQ 304 Query: 303 QCPDATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLWLE 362 A + + SL TA D+AR YE+ Q+++F LL+++PAAL S+ QL L Sbjct: 305 SSYGAADTIRSLTTAVDIARERCLPWSMYERKHDVAQRNTFRLLAALPAALDSSSQLRLH 364 Query: 363 FQPKVSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQAT 422 FQP+V L RC GVEALLRW+HP+ G + P+ FIP+AEKTALI ++T WV+ GI QA Sbjct: 365 FQPRVDLHDHRCVGVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVIDNGIAQAA 424 Query: 423 AWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEKLY 482 W ++G+ +A+NVSA D D LL R L++H++ +EIEFTESAM R+P+ L Sbjct: 425 RWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLA 484 Query: 483 GRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPSMI 542 ++ I LGV +AIDDFG G+SN SYLK +PA LK+DQSFI + +D+ +VP+MI Sbjct: 485 EQLAAIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMI 544 Query: 543 HLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWI 592 LG LG VVAEG+E+ + L+ GCD GQG+ IA+PM AA W+ Sbjct: 545 QLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWL 594 >ref|YP_004851392.1| EAL domain-containing protein [Xanthomonas axonopodis pv. citrumelo F1] gb|AEO42094.1| EAL domain protein [Xanthomonas axonopodis pv. citrumelo F1] Length = 618 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/590 (47%), Positives = 370/590 (62%), Gaps = 10/590 (1%) Query: 6 LPLDAAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQWFKSRQ 65 LP E RL VL CLLD+ PDP+ D + +A R D EIALVSLV EHRQWFK+R Sbjct: 12 LPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIALVSLVDEHRQWFKARI 71 Query: 66 GLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVLRTADG 125 GL+A TPRSQ+FCAHAI + MV+PDAR D RF DNPLVLG P IRFYAGA L+ DG Sbjct: 72 GLEARETPRSQAFCAHAIRSDEVMVVPDARLDPRFCDNPLVLGPPFIRFYAGAPLKLRDG 131 Query: 126 VALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVAG 185 ++GTLC+IG SPR +LE L + + R++ LR +Y D T LPNR+R Sbjct: 132 HSIGTLCVIGTSPREGLDAAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRARFSED 191 Query: 186 VQLMQAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLCQA 245 + L+ D P AVA+DVC Y DMVKALGW+Y +G++ A+ RL Sbjct: 192 LDTW------LSQRDTAPA-TTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAY 244 Query: 246 L-GEMALYRIGATSFAYLDRCD--RWQAQADRIRQAFAATVEHQGIPHHLEVSVGIVPLS 302 L G LYR+ T+F +L + + R ++ +AF +EHQGIPH S+G V L Sbjct: 245 LPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVAKAFTEPLEHQGIPHTAVASIGAVSLQ 304 Query: 303 QCPDATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLWLE 362 A + + SL T+ D+AR YE+ Q+++F LL+++PAAL S QL L Sbjct: 305 SSYGAADTIRSLTTSVDIARERCLPWSLYERKHDVAQRNTFRLLAALPAALDSASQLRLH 364 Query: 363 FQPKVSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQAT 422 FQP+V L RC GVEALLRW+HP+ G + P+ FIP+AEKTALI ++T WV+ GI QA Sbjct: 365 FQPRVDLHDHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVIDNGIAQAA 424 Query: 423 AWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEKLY 482 W ++G+ + +A+NVSA D D LL R L++H++ +EIEFTESAM R+P+ L Sbjct: 425 RWQQQGLDLNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLA 484 Query: 483 GRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPSMI 542 ++ I LGV +AIDDFG G+SN SYLK +PA LK+DQSFI + +D+ +VP+MI Sbjct: 485 EQLATIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMI 544 Query: 543 HLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWI 592 LG LG VVAEG+E+ + L+ GCD GQG+ IA+PM AA W+ Sbjct: 545 QLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWL 594 >ref|ZP_08184377.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas gardneri ATCC 19865] gb|EGD17994.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas gardneri ATCC 19865] Length = 618 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 278/586 (47%), Positives = 366/586 (62%), Gaps = 10/586 (1%) Query: 10 AAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQWFKSRQGLDA 69 A E RLAVL CLLD+ PDP+ + I +A R EIALVSLV EHRQWFK+R GL+A Sbjct: 16 ADESTRLAVLRGLCLLDSPPDPMFETIAAMAARSLGAEIALVSLVDEHRQWFKARIGLEA 75 Query: 70 PGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVLRTADGVALG 129 TPR Q+FCAHAI + MV+PDA+ D RF DNPLVLG P IRFYAGA L+ DG ++G Sbjct: 76 QETPRDQAFCAHAIRADEVMVVPDAQLDRRFCDNPLVLGPPFIRFYAGAPLKLLDGHSIG 135 Query: 130 TLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVAGVQLM 189 TLC+IG SPR +LE L + + R++ LR +Y D T LPNRSR + Sbjct: 136 TLCVIGTSPRPGLDAATIAQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRSRFGEDLDAW 195 Query: 190 QAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLCQAL-GE 248 + G AVAVD+C + Y DMVKALGWDY +G++ A+ RL L Sbjct: 196 LSQREGAPAT-------TAVAVDICGNDYFRDMVKALGWDYADGYVALAQRRLAAYLPAS 248 Query: 249 MALYRIGATSFAYLDRCD--RWQAQADRIRQAFAATVEHQGIPHHLEVSVGIVPLSQCPD 306 ALYR+ T+F +L + + R ++ +AFA +EHQGIPH S+G V L Sbjct: 249 TALYRLDPTTFGFLAQAETQRLSTLCIKVSKAFAEPLEHQGIPHTAVASIGAVALQTSYG 308 Query: 307 ATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLWLEFQPK 366 A + + SL TA DV+R YE+ Q+++F LL+++PAAL S QL L +QP+ Sbjct: 309 AADTIRSLTTAVDVSRERSLPWSMYERKHDVAQRNTFRLLAALPAALDSASQLRLHYQPR 368 Query: 367 VSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQATAWAR 426 V L RC VEALLRW+HP+ G + P+ F+P+AEKTALI ++T WV+ GI QA W + Sbjct: 369 VDLHDHRCVAVEALLRWQHPMIGPVMPSDFVPMAEKTALINRITAWVIDNGIAQAARWQQ 428 Query: 427 RGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEKLYGRIQ 486 +G+ +A+NVSA D D LL R LE+H++ +EIEFTESAM R+PE L ++ Sbjct: 429 QGLDFNLALNVSAADLDRPGFAGLLKRGLERHKLDPRRLEIEFTESAMIRHPEHLAEQLA 488 Query: 487 EIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPSMIHLGQ 546 I LGV +AIDDFG G+SN SYLK +PA LK+DQSF+ + +D+ +VP+MI LG Sbjct: 489 AIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFVRSLPDSRTDRTLVPAMIQLGH 548 Query: 547 RLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWI 592 LG VVAEG+E+ + L+ GCD GQG+ IA+PM AA W+ Sbjct: 549 SLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWL 594 >ref|ZP_08186388.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas perforans 91-118] gb|EGD15982.1| diguanylate cyclase/phosphodiesterase with GAF sensor [Xanthomonas perforans 91-118] Length = 618 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/590 (47%), Positives = 369/590 (62%), Gaps = 10/590 (1%) Query: 6 LPLDAAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQWFKSRQ 65 LP E RL VL CLLD+ PDP+ D + +A R D EIALVSLV EHRQWFK+R Sbjct: 12 LPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIALVSLVDEHRQWFKARI 71 Query: 66 GLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVLRTADG 125 GL+A TPRSQ+FCAHAI + MV+PDAR D RF DNPLVLG P IRFYAGA L+ DG Sbjct: 72 GLEARETPRSQAFCAHAIRSDEVMVVPDARLDPRFCDNPLVLGPPFIRFYAGAPLKLRDG 131 Query: 126 VALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVAG 185 ++GTLC+IG SPR +LE L + + R++ LR +Y D T LPNR+R Sbjct: 132 HSIGTLCVIGTSPREGLDAAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRARFSED 191 Query: 186 VQLMQAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLCQA 245 + L+ D P AVA+DVC Y DMVKALGW+Y +G++ A+ RL Sbjct: 192 LDTW------LSQRDTAPA-TTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAY 244 Query: 246 L-GEMALYRIGATSFAYLDRCD--RWQAQADRIRQAFAATVEHQGIPHHLEVSVGIVPLS 302 L G LYR+ T+F +L + + R ++ +AF +EHQGIPH S+G V L Sbjct: 245 LPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVAKAFTEPLEHQGIPHTAVASIGAVSLQ 304 Query: 303 QCPDATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLWLE 362 A + + SL T+ D+AR YE+ Q+++F LL+++PAAL S QL L Sbjct: 305 SSYGAADTIRSLTTSVDIARERCLPWSLYERKHDVAQRNTFRLLAALPAALDSASQLRLH 364 Query: 363 FQPKVSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQAT 422 FQP+V L RC GVEALLRW+HP+ G + P+ FIP+AEKTALI ++T WV+ GI QA Sbjct: 365 FQPRVDLHDHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVIDNGIAQAA 424 Query: 423 AWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEKLY 482 W ++G+ +A+NVSA D D LL R L++H++ +EIEFTESAM R+P+ L Sbjct: 425 RWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLA 484 Query: 483 GRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPSMI 542 ++ I LGV +AIDDFG G+SN SYLK +PA LK+DQSFI + +D+ +VP+MI Sbjct: 485 EQLATIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMI 544 Query: 543 HLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWI 592 LG LG VVAEG+E+ + L+ GCD GQG+ IA+PM AA W+ Sbjct: 545 QLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWL 594 >ref|NP_637143.1| hypothetical protein XCC1777 [Xanthomonas campestris pv. campestris str. ATCC 33913] ref|YP_243529.1| hypothetical protein XC_2459 [Xanthomonas campestris pv. campestris str. 8004] ref|YP_001903892.1| signaling protein [Xanthomonas campestris pv. campestris str. B100] gb|AAM41067.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAY49509.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] emb|CAP51847.1| signaling protein [Xanthomonas campestris pv. campestris] Length = 618 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 278/593 (46%), Positives = 374/593 (63%), Gaps = 13/593 (2%) Query: 5 PLPLDAAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQWFKSR 64 PLP E RLAVL CLLD+ PDP+ D I +A R+ EIALVSLV EHRQWFK+R Sbjct: 11 PLPSALDEAARLAVLHGLCLLDSPPDPVFDTIAAMAARMLGTEIALVSLVDEHRQWFKAR 70 Query: 65 QGLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVLRTAD 124 GL+AP TPR +FCAHA+ +VIPDA D RF +NPLVLG P IRFYAGA L+ D Sbjct: 71 VGLEAPETPRKHAFCAHALRSDDVLVIPDALLDPRFCNNPLVLGAPHIRFYAGAPLKLRD 130 Query: 125 GVALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVA 184 G +GTLC+IG SPR+ + +LE L + + R++ LR +Y + T LPNR+R Sbjct: 131 GHTIGTLCVIGTSPRAGLDAEQRIQLEGLRDLAVLRVENLRSSTYRNGPTGLPNRARFSE 190 Query: 185 GVQ-LMQAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLC 243 + ++ TA A A+AVD+C Y DMVKALGWDY +G++ A +RL Sbjct: 191 DLDAVLLQRTADSAA--------TAIAVDLCGSDYFRDMVKALGWDYADGYVALAYKRLI 242 Query: 244 QAL-GEMALYRIGATSFAYLDRCD---RWQAQADRIRQAFAATVEHQGIPHHLEVSVGIV 299 L ALYR+ T+FA++ R A +I + F A +EHQGIPH S+G V Sbjct: 243 SKLPAGTALYRLDTTTFAFMVTTADPLRLSALCSKISKGFVAPLEHQGIPHTAVASIGAV 302 Query: 300 PLSQCPDATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQL 359 L A + + SL T+ DVAR YE+ +Q+++F LL+++PAAL S++QL Sbjct: 303 LLETSYGAADTLRSLTTSVDVAREHCLTWSLYERKHDVVQRNTFRLLAALPAALASSNQL 362 Query: 360 WLEFQPKVSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIE 419 L +QP+V L RC VEALLRW+HP+ G + P+ FIP+AEKTALI ++T WV+ +GI Sbjct: 363 RLHYQPRVDLHDHRCVAVEALLRWQHPMIGPVMPSDFIPMAEKTALINRITAWVIDQGIA 422 Query: 420 QATAWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPE 479 QA W ++G+ +A+NVSA D D + LL R L++H++ +EIEFTESAM R+PE Sbjct: 423 QAARWQQQGLDFNLALNVSAADLDQPGFVGLLRRGLDRHKLDPRRLEIEFTESAMIRHPE 482 Query: 480 KLYGRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVP 539 L ++ + LGV +AIDDFG G+SN SYLK +PA LK+DQSF+ + +D+ +VP Sbjct: 483 HLSEQLAAVAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFVRSLPDSRTDRTLVP 542 Query: 540 SMIHLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWI 592 +MI LG LG VVAEG+E+ + L+ GCD GQG+ IA+PM AA W+ Sbjct: 543 AMIQLGHSLGQRVVAEGIESAQAYAQLRSWGCDEGQGYWIAKPMPAAALEAWL 595 >ref|YP_363556.1| putative phosphodiesterase [Xanthomonas campestris pv. vesicatoria str. 85-10] emb|CAJ23502.1| putative phosphodiesterase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 666 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 280/590 (47%), Positives = 369/590 (62%), Gaps = 10/590 (1%) Query: 6 LPLDAAERQRLAVLDAYCLLDTQPDPLCDMITELATRLFDVEIALVSLVAEHRQWFKSRQ 65 LP E RL VL CLLD+ PDP+ D + +A R D EIALVSLV EHRQWFK+R Sbjct: 60 LPPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIALVSLVDEHRQWFKARI 119 Query: 66 GLDAPGTPRSQSFCAHAIVQAQTMVIPDARQDERFADNPLVLGEPGIRFYAGAVLRTADG 125 GL+A TPRSQ+FCAHAI + MV+PDAR D RF DNPLV+G P IRFYAGA L+ DG Sbjct: 120 GLEARETPRSQAFCAHAIRSDEVMVVPDARLDPRFCDNPLVMGPPFIRFYAGAPLKLRDG 179 Query: 126 VALGTLCLIGKSPRSQFSEVDQDRLERLAAIVMARLDMLRMGSYVDSLTSLPNRSRLVAG 185 ++GTLC+IG SPR +LE L + + R++ LR +Y D T LPNR+R Sbjct: 180 HSIGTLCVIGTSPRPGLDAAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRARFSED 239 Query: 186 VQLMQAHTAGLAGLDELPQRLAAVAVDVCDHTYLTDMVKALGWDYVEGFLIQAKERLCQA 245 + L+ D P AVA+DVC Y DMVKALGW+Y +G++ A+ RL Sbjct: 240 LDTW------LSQRDTAPA-TTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAY 292 Query: 246 L-GEMALYRIGATSFAYLDRCD--RWQAQADRIRQAFAATVEHQGIPHHLEVSVGIVPLS 302 L G LYR+ T+F +L + + R ++ +AF +EHQGIPH S+G V L Sbjct: 293 LPGGTLLYRLDPTTFGFLAQAEGQRLATLCTKVAKAFTEPLEHQGIPHTAVASIGAVSLQ 352 Query: 303 QCPDATELVPSLLTAADVARADGHLQCQYEQPLGQMQKHSFELLSSIPAALLSTDQLWLE 362 A + + SL T+ D+AR YE+ Q+++F LL+++PAAL S QL L Sbjct: 353 SSYGAADTIRSLTTSVDIARERCLPWSLYERKHDVAQRNTFRLLAALPAALDSASQLRLH 412 Query: 363 FQPKVSLSTGRCAGVEALLRWRHPVHGVISPALFIPLAEKTALIRQVTLWVLQRGIEQAT 422 FQP+V L RC GVEALLRW+HP+ G + P+ FIP+AEKTALI ++T WV+ GI QA Sbjct: 413 FQPRVDLHDHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVIDNGIAQAA 472 Query: 423 AWARRGVAIPVAINVSARDFDNDDLLQLLGRLLEQHRIPAGLIEIEFTESAMSRNPEKLY 482 W ++G+ +A+NVSA D D LL R L++H++ +EIEFTESAM R+P+ L Sbjct: 473 RWQQQGLDFNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLA 532 Query: 483 GRIQEIKRLGVKVAIDDFGAGFSNLSYLKHIPADYLKLDQSFILRMESDYSDQQIVPSMI 542 ++ I LGV +AIDDFG G+SN SYLK +PA LK+DQSFI + +D+ +VP+MI Sbjct: 533 EQLATIAALGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMI 592 Query: 543 HLGQRLGFAVVAEGVENEKTRRILQHLGCDFGQGFGIARPMNAADCWDWI 592 LG LG VVAEG+E+ + L+ GCD GQG+ IA+PM AA W+ Sbjct: 593 QLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWL 642