BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0003.p (575 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbasp... 524 e-146 ref|YP_003777912.1| methyl-accepting chemotaxis transducer trans... 288 2e-75 ref|YP_003524206.1| methyl-accepting chemotaxis sensory transduc... 179 2e-42 ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 176 9e-42 ref|YP_003847742.1| methyl-accepting chemotaxis sensory transduc... 172 2e-40 ref|YP_284369.1| histidine kinase, HAMP region: chemotaxis senso... 171 3e-40 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 169 2e-39 gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis pr... 164 4e-38 ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbasp... 164 5e-38 ref|YP_002946068.1| methyl-accepting chemotaxis sensory transduc... 162 1e-37 >ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ62877.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 268/279 (96%), Positives = 274/279 (98%) Query: 1 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 60 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KVNTGARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQ 120 KVNTGARSLRNAI+ARNPEEQKKYLDRMDTYTSQVSEHLAEMEKR NTP+GSEL+AALKQ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 TRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAER 180 RADYSKER+KVV+LIHQQKRDEATAHLFDK IPVQDKYFAAVKEMVSFQSSLMDKSAER Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDAT 240 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQI+AT Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 SKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 SKDETG LLGALKSMNDNLHRIV EVRAGTDTINTASRE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASRE 280 >ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66004.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 159/279 (56%), Positives = 204/279 (73%) Query: 1 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 60 MK+ D+KISVRL CFA LI VMC+I GVG+K+L +S ++ IV DRY K+AL +I D Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 KVNTGARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQ 120 VN AR+LRNA+L RN EE +YLDR +++ +E L +MEK ++T +G EL ++++ Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 TRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAER 180 R+ Y+ R K+ ELI QQK++EA LF + IP QDKYF + + V+FQ SLM++S Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDAT 240 + SAI +ML LS VA+ L + A L+TRSITRPLNEAV VA+AVAAGDLTVQI AT Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 SKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 SKDETG LL ALKSMND+LHRIV+EVR G+DTINTAS E Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAE 279 >ref|YP_003524206.1| methyl-accepting chemotaxis sensory transducer [Sideroxydans lithotrophicus ES-1] gb|ADE11819.1| methyl-accepting chemotaxis sensory transducer [Sideroxydans lithotrophicus ES-1] Length = 542 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 101/265 (38%), Positives = 160/265 (60%) Query: 3 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 62 + DMKI +RLG FA +++++ VI+ V + VS+ +++V D++ K + I +V Sbjct: 2 LKDMKIGMRLGIGFALVLILLVVISAVSFIRVGQVSNEIEDMVGDKFPKTVIANGIVSQV 61 Query: 63 NTGARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTR 122 N AR+LRNA L + +E KK LDR+ +++ + ++EK + T G + +A R Sbjct: 62 NVIARALRNAALVSSKDEMKKELDRVADSRAKIIDGFDKLEKTIKTEDGKKALAKAMDAR 121 Query: 123 ADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERAS 182 + + + +EL KRDEA + Q +Y +AV +++ FQS LM S E AS Sbjct: 122 KAFVAYQDRFIELQKAGKRDEAIELMVTVMRQSQGQYISAVNDLIDFQSQLMTNSGEAAS 181 Query: 183 AASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATSK 242 A+S ++LVL +A+ ++ A +TRSITRPLNEAV VA +A GD+TV+I+ TSK Sbjct: 182 QAASQTRTLILVLGLIAISIAVFFAWWVTRSITRPLNEAVDVANKLAEGDMTVKIEVTSK 241 Query: 243 DETGVLLGALKSMNDNLHRIVTEVR 267 DETG LL A+++M + L +++ EVR Sbjct: 242 DETGELLAAMQTMTEKLSQVIGEVR 266 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 176 bits (446), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 104/275 (37%), Positives = 166/275 (60%) Query: 5 DMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNT 64 ++KI RL F ++++++ V+A + + ++DA E+ DRY K L + D +N Sbjct: 3 NLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQ 62 Query: 65 GARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTRAD 124 AR++RNA+L + L ++ T ++ L E+EK V + +G + +A L+ R+ Sbjct: 63 IARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADRSK 122 Query: 125 YSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERASAA 184 + + ++L +DEA A LF + P Q Y A++ +++ +Q+ LM KS A+A Sbjct: 123 FLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEANAK 182 Query: 185 SSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATSKDE 244 +S ++ + S +AVL++A+ A+L TRSITRPL++AV +A VA GDLT I SKDE Sbjct: 183 ASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKDE 242 Query: 245 TGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 TG LL ALK MN+ L +IVT+VR GTDTI +AS + Sbjct: 243 TGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQ 277 >ref|YP_003847742.1| methyl-accepting chemotaxis sensory transducer [Gallionella capsiferriformans ES-2] gb|ADL55978.1| methyl-accepting chemotaxis sensory transducer [Gallionella capsiferriformans ES-2] Length = 542 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/275 (34%), Positives = 162/275 (58%), Gaps = 1/275 (0%) Query: 5 DMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNT 64 +++I VRLG F +++++ +I+ L+ +S +++ND++ K + ++ D++N Sbjct: 4 NLRIGVRLGIGFGLMVLLLSIISIFSYNRLMQISTDIGDVINDKFPKTVVANEVIDQINV 63 Query: 65 GARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTRAD 124 AR+LRN++L + + QK+ LDR+ + ++EK + + G +++AA + R Sbjct: 64 IARALRNSLLVKGDDVQKE-LDRVMEARKNILAGFDKLEKSIRSEDGKKMLAATLEARKL 122 Query: 125 YSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERASAA 184 Y +++ K +EL KRDEA + K Q Y +V E+++FQS LM K+ A+ A Sbjct: 123 YVEDQNKFIELQTAGKRDEAVELMVTKMRKTQGDYIKSVSELINFQSELMKKTGAEANVA 182 Query: 185 SSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATSKDE 244 A ++LVLS A+L++ A +TRSITRPL+EAV VA ++ G+L V+I S DE Sbjct: 183 VEGAQRLILVLSLSAILIAVGFAFWVTRSITRPLDEAVNVANNLSEGNLNVKIVVESTDE 242 Query: 245 TGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 TG LL A+++M L I+T VR D + +AS E Sbjct: 243 TGQLLSAMQNMVTKLTEIITTVRGNADALASASEE 277 >ref|YP_284369.1| histidine kinase, HAMP region: chemotaxis sensory transducer [Dechloromonas aromatica RCB] gb|AAZ45899.1| Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer [Dechloromonas aromatica RCB] Length = 541 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 170/273 (62%) Query: 5 DMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNT 64 ++KI RLG F +++++ I+ + L ++++ +++V+D++ K + I + +N Sbjct: 4 NLKIGTRLGLGFGFVLILLTAISVISYTRLGTLNESINDMVSDKFPKTVIANDIVNNINL 63 Query: 65 GARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTRAD 124 AR++RNA L + PE+ K LDR+ +++E A++EK + + +G + +A + R Sbjct: 64 VARAIRNAALVKRPEDVSKELDRVADARKKITESFAKLEKLILSEEGKKTLAKATEARKA 123 Query: 125 YSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERASAA 184 Y ++ +EL+ K+DEA L K Q Y AAV E+++FQS++M+K + A+ Sbjct: 124 YLGDQEAALELLKASKKDEAVDLLITKVRKSQADYIAAVNELIAFQSAMMEKEGKNAAEM 183 Query: 185 SSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATSKDE 244 ++A ++L ++ A+L++A A +TRSITRP+NEAV+ ATA++ GDLTV++++ S+DE Sbjct: 184 VNNAKQLILAMAIGAILIAAGFAWWVTRSITRPINEAVRAATALSEGDLTVKLESDSQDE 243 Query: 245 TGVLLGALKSMNDNLHRIVTEVRAGTDTINTAS 277 G L+ A+++M L +I+ EVR D + A+ Sbjct: 244 IGHLMAAMQNMIGKLTQIIGEVRTAADNLTNAA 276 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 143/234 (61%) Query: 46 NDRYVKVALGTQITDKVNTGARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKR 105 NDRY K I D +N AR++RNA+L + + K LD ++ + ++E L ++++ Sbjct: 44 NDRYPKTVNAHIIKDTLNETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRT 103 Query: 106 VNTPKGSELMAALKQTRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKE 165 + + KG + AL R ++ + K V L+ Q R EA LF + P Q +Y + Sbjct: 104 IKSEKGRTYIKALTDARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDR 163 Query: 166 MVSFQSSLMDKSAERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVA 225 +V FQS+LM K+ E A S++A ++ +LS +AV++SA L TRSITRPL++AV +A Sbjct: 164 LVEFQSNLMHKAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLA 223 Query: 226 TAVAAGDLTVQIDATSKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 VA GDLT I TSKDETG LL AL+ MN+ L RIVT+VR GTDTI TAS + Sbjct: 224 RKVADGDLTGTIVVTSKDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQ 277 >gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis protein I [Rahnella aquatilis] Length = 554 Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 99/279 (35%), Positives = 162/279 (58%), Gaps = 3/279 (1%) Query: 3 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 62 I++M++ RLGA F+ +I+++ +++ V + ++ + ++I++DRYVKV L + D V Sbjct: 5 INNMRVGARLGAAFSLVILLLIIVSVTAVTKISSINSSIEQIISDRYVKVRLAFDVRDGV 64 Query: 63 NTGARSLRNAIL-ARNPEEQ-KKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQ 120 N + LR ++ +NPE+ K+YL ++D Q + + ++ T G + + AL+ Sbjct: 65 NDQIKYLRGIVIDTKNPEQNNKRYL-QLDDSVKQTNLAMDKIAAIQTTVVGKQKIKALQD 123 Query: 121 TRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAER 180 + + ++V L D AT + K Q+ Y + Q + ++ Sbjct: 124 ASDIFEAAKEQLVALARAGDMDGATEFVLRKLTTSQNAYLDLASAFANSQDQQLQAEGKK 183 Query: 181 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDAT 240 A A +AI + L+ S +A+L++A +TRSITRPL+ AV+VA VAAGDLT QI T Sbjct: 184 AIADGHNAIQLTLIFSVLAILVAAALGFFLTRSITRPLHTAVKVAENVAAGDLTTQIQVT 243 Query: 241 SKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 S DETG L+ LK+MN+NL +IVTEVRAGT+ I++AS E Sbjct: 244 SGDETGQLMQGLKNMNENLLKIVTEVRAGTNAIHSASGE 282 >ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64914.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 102/279 (36%), Positives = 163/279 (58%) Query: 1 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 60 M+ +++ I+ RL F+ LI+V+ I +G+ L ++ A D +VNDRY K+A+ I+ Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 KVNTGARSLRNAILARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQ 120 KV+ A SLRN +L +P + +++ +++ ++ E+ + V P+ + + + Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 TRADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAER 180 TR Y+ R ++ +L +D A + + +P+Q YF+ + E+ Q LMD+S ++ Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDAT 240 A AA + IM++ +A +A A I+RSITRPL+ AV+VA VAAGDLT I A Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 SKDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 S DETG LL AL +MN L IV EVR GTD++ TAS + Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQ 279 >ref|YP_002946068.1| methyl-accepting chemotaxis sensory transducer [Variovorax paradoxus S110] gb|ACS20802.1| methyl-accepting chemotaxis sensory transducer [Variovorax paradoxus S110] Length = 559 Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/278 (38%), Positives = 174/278 (62%), Gaps = 6/278 (2%) Query: 5 DMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNT 64 ++KI RLG FA ++ +M IAG+GV L V DA E+V VK L +NT Sbjct: 3 NLKIGTRLGIGFALVLALMACIAGIGVFRLQGVGDAVQEMVQRSLVKERLAANWL--LNT 60 Query: 65 GARSLRN-AILARNPEEQKKYLDR-MDTYTSQVSEHLAEMEKRVNTPKGSELMAALKQTR 122 + S+R A++ N E + YL + M ++ +SE A++E +++P+ + A +K+ R Sbjct: 61 SSNSVRTFALVKSNDAEVQDYLQKQMSKTSAGISETQAKLEAMLDSPEEQAISADIKEKR 120 Query: 123 ADYSKERLKVVELIHQQKRDEATAHLFDKAIPVQDKYFAAVKEMVSFQSSLMDKSAERAS 182 + Y R +++L + K++EA A K +P+ + Y A+++ M++ Q+ +DK+A+ Sbjct: 121 SQYVGLRNTILKLKAEGKQEEAAALTNGKLVPMLEVYDASIRGMLTHQAERIDKAADAVD 180 Query: 183 AASSSA-INIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIDATS 241 + + + +N+ +VL+ A+LL + A L+TRSITRPLNEAV+VA VA GDLT +I+++S Sbjct: 181 SLNRAGRMNV-IVLAMAALLLGGVLAWLLTRSITRPLNEAVRVAQTVADGDLTSRIESSS 239 Query: 242 KDETGVLLGALKSMNDNLHRIVTEVRAGTDTINTASRE 279 +DETG L+ ALK+MN +L +V+ VR GTD I TAS E Sbjct: 240 RDETGQLMLALKNMNASLATVVSGVRQGTDAIATASGE 277