BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0002.p (204 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774784.1| transcription regulator protein [Herbaspiril... 405 e-111 gb|AEG71769.1| conserved hypothetical protein [Ralstonia solanac... 108 5e-22 ref|NP_522377.1| transcription regulator protein [Ralstonia sola... 106 2e-21 emb|CBJ40436.1| putative transcription regulator protein, TetR f... 106 2e-21 ref|YP_002257563.1| hypothetical protein RSIPO_03871 [Ralstonia ... 101 6e-20 ref|YP_002029851.1| TetR family transcriptional regulator [Steno... 84 8e-15 emb|CAG34248.1| transcriptional repressor [Stenotrophomonas malt... 84 1e-14 ref|YP_004751492.1| transcriptional repressor for multidrug effl... 83 2e-14 gb|AAS21047.1| repressor SmeT [Stenotrophomonas maltophilia] 83 3e-14 emb|CAG34263.1| transcriptional repressor [Stenotrophomonas malt... 83 3e-14 >ref|YP_003774784.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62876.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 203/204 (99%), Positives = 204/204 (100%) Query: 1 MARADQTRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEE 60 MARADQTRA+LLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEE Sbjct: 1 MARADQTRALLLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEE 60 Query: 61 MRWPFELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEE 120 MRWPFELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEE Sbjct: 61 MRWPFELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEE 120 Query: 121 LSLRLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVIAENMDDAQAA 180 LSLRLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVIAENMDDAQAA Sbjct: 121 LSLRLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVIAENMDDAQAA 180 Query: 181 PEGYFYLTPGLVLVGASTLALEDA 204 PEGYFYLTPGLVLVGASTLALEDA Sbjct: 181 PEGYFYLTPGLVLVGASTLALEDA 204 >gb|AEG71769.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 228 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 97/169 (57%) Query: 2 ARADQTRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEM 61 A A QTRA +++AA F+ RG+RA TLE VAA A +TRGAVY HF K LV A+ + + Sbjct: 7 AGAAQTRARVIEAATEVFSERGLRAATLEDVAARAGVTRGAVYGHFSGKPLLVAAIIDGL 66 Query: 62 RWPFELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEEL 121 RWP ++GEDL+ Y + PL LL L QM + + Q + + +VLR G P+ Sbjct: 67 RWPLDVGEDLADYRSHPRPLRLLHAQLSAQMARCLQTPSQWQAVLLVLRESGYAAWPKAS 126 Query: 122 SLRLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVI 170 S + +AV+ L V+ +A ER LR + P AR + A +G++ Sbjct: 127 SDHAMHLQEKAVTRLGDVMRLARERHQLRLDIEPDAAARCLHAVGIGIL 175 >ref|NP_522377.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD17967.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%) Query: 7 TRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPFE 66 TRA +++AA+ + RG+RA TL VAA A +TRGAVY HFP K ALV A+ + + WP + Sbjct: 12 TRARVIEAAIEVVSERGIRAATLADVAARAGVTRGAVYGHFPGKPALVAAIIDGLLWPLD 71 Query: 67 LGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLR---YRGTPELPEELSL 123 +G+DL+ Y A PL L L Q+ + + QR + +VLR Y P + ++ Sbjct: 72 IGDDLAGYRAHPRPLRRLHAQLSAQLTRCLQTPAQRHVVTLVLRESGYLACPAASADHAM 131 Query: 124 RLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVIAEN 173 RL +AV+ L V+ +A +R LR + P AR + A +G+++E+ Sbjct: 132 RLRD---KAVASLGGVMGMARDRHQLRPDIEPDAAARCLHALGIGILSEH 178 >emb|CBJ40436.1| putative transcription regulator protein, TetR family [Ralstonia solanacearum CMR15] Length = 219 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%) Query: 7 TRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPFE 66 TRA +++AA+ + RG+RA TL VAA A +TRGAVY HFP K ALV A+ + + WP + Sbjct: 12 TRARVIEAAIEVVSERGIRAATLADVAARAGVTRGAVYGHFPGKPALVAAIIDGLLWPLD 71 Query: 67 LGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLR---YRGTPELPEELSL 123 +G+DL+ Y A PL L L Q+ + + QR + +VLR Y P + ++ Sbjct: 72 IGDDLAGYRAHPRPLRRLHAQLSAQLTRCLQTPAQRHVVTLVLRESGYLACPAASADQAM 131 Query: 124 RLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVIAEN 173 RL +AV+ L V+ +A +R LR + P AR + A +G+++E+ Sbjct: 132 RLRD---KAVARLGGVMGMARDRHQLRPDIEPEAAARCLHALGIGILSEH 178 >ref|YP_002257563.1| hypothetical protein RSIPO_03871 [Ralstonia solanacearum IPO1609] emb|CAQ59449.1| hypothetical protein RSIPO_03871 [Ralstonia solanacearum IPO1609] Length = 230 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/169 (39%), Positives = 94/169 (55%) Query: 2 ARADQTRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEM 61 A A QTRA +++AA F+ RG+RA TLE VAA A +TRGAVY HF K LV A+ + + Sbjct: 7 AGAAQTRARVIEAATEVFSERGLRAATLEDVAARAGVTRGAVYGHFSGKPLLVAAIIDGL 66 Query: 62 RWPFELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEEL 121 RWP ++GEDL+ Y + PL L L QM + Q + + +VLR G P+ Sbjct: 67 RWPLDVGEDLADYPSHPRPLRQLHVQLSAQMARCQQTPPQWQAVMLVLRESGYAAWPKAS 126 Query: 122 SLRLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVI 170 S + AV+ L V+ +A +R LR + P AR + A +G++ Sbjct: 127 SDHALHLQENAVARLGDVMRLARQRHQLRLDIEPDAAARCLHAVGIGIL 175 >ref|YP_002029851.1| TetR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gb|ACF53168.1| transcriptional regulator, TetR family [Stenotrophomonas maltophilia R551-3] Length = 219 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 3/165 (1%) Query: 7 TRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPFE 66 TR +LDAA A F GV TTLE + A A TRGAVYWHF +K ++TA+ E + PF Sbjct: 12 TREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLTAIVERVHLPFM 71 Query: 67 LGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELSLRLE 126 + ++ D P+ LR V+ + D R R+ MEI+LR + + ++ L+ Sbjct: 72 QELERTSTDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASADT--KVLTELQ 129 Query: 127 TMILR-AVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVI 170 R A+ + + A + G LR G P AR + A LGV+ Sbjct: 130 QAGFRDALDRMERALRRAQDLGQLREGADPKIAARMLHATVLGVL 174 >emb|CAG34248.1| transcriptional repressor [Stenotrophomonas maltophilia] Length = 219 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 1/164 (0%) Query: 7 TRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPFE 66 TR +LDAA A F GV TTLE + A A TRGAVYWHF +K ++ A+ E + PF Sbjct: 12 TREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFM 71 Query: 67 LGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELSLRLE 126 + ++ D P+ LR V+ + D R R+ MEI+LR + + + L+ + Sbjct: 72 QELERTSTDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASAD-TKVLTEMQQ 130 Query: 127 TMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVI 170 T A+ + + A + G LR G P AR + A LGV+ Sbjct: 131 TGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATVLGVL 174 >ref|YP_004751492.1| transcriptional repressor for multidrug efflux pump (TetR/AcrR family) [Collimonas fungivorans Ter331] gb|AEK60669.1| transcriptional repressor for multidrug efflux pump (TetR/AcrR family) [Collimonas fungivorans Ter331] Length = 213 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 83/165 (50%) Query: 6 QTRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPF 65 +TR+ +LDAA F + GV TTL VA++A +TRGA+YWHF +K L A+ E +R P Sbjct: 11 ETRSRILDAAAEVFHQHGVARTTLADVASAADVTRGAIYWHFKNKSDLFDAMCERVRLPM 70 Query: 66 ELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELSLRL 125 E + +A +PL R +++ + R+ EIVL + + + +R Sbjct: 71 EAMIERTADENAHDPLNQFRNRCLFTLQEATLNPESRKIFEIVLHKCELVDPEDPIYIRQ 130 Query: 126 ETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVI 170 L+ +++ ++ A +G L R L PI A + G++ Sbjct: 131 HECFLQGRTDIERLLRFAIAKGQLPRELDPILAAVMVQGLLFGIL 175 >gb|AAS21047.1| repressor SmeT [Stenotrophomonas maltophilia] Length = 219 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 1/164 (0%) Query: 7 TRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPFE 66 TR +LDAA A F GV TTLE + A A TRGAVYWHF +K ++ A+ E + PF Sbjct: 12 TREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFM 71 Query: 67 LGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELSLRLE 126 + ++ D P+ LR V+ + D R R+ MEI+LR + + + L+ + Sbjct: 72 QELERTSTDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASAD-TKVLTEMQQ 130 Query: 127 TMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVI 170 A+ + + A + G LR G P AR + A LGV+ Sbjct: 131 AGFRDALDRMERALRRAQDLGQLREGADPKIAARMLHATVLGVL 174 >emb|CAG34263.1| transcriptional repressor [Stenotrophomonas maltophilia] Length = 219 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/164 (34%), Positives = 83/164 (50%), Gaps = 1/164 (0%) Query: 7 TRAILLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPFE 66 TR +LDAA A F GV TTLE + A A TRGAVYWHF +K ++ A+ E + PF Sbjct: 12 TREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFM 71 Query: 67 LGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELSLRLE 126 + ++ D P+ LR V+ + D R R+ MEI+LR + + + L+ + Sbjct: 72 QELERTSTDQRDTPVHDLRAVMIHSFIEMSEDERLRKTMEIMLRSDASADT-KVLTEMQQ 130 Query: 127 TMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVI 170 A+ + + A + G LR G P AR + A LGV+ Sbjct: 131 AGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATVLGVL 174