BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0061.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774302.1| hypothetical protein Hsero_0877 [Herbaspiril...   159   1e-37
ref|XP_002537356.1| conserved hypothetical protein [Ricinus comm...   144   3e-33

>ref|YP_003774302.1| hypothetical protein Hsero_0877 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62394.1| hypothetical protein Hsero_0877 [Herbaspirillum seropedicae SmR1]
          Length = 127

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/111 (67%), Positives = 83/111 (74%)

Query: 1   MNALVKFDLIAPAGKSRDFVMQPPLPMDRITFNTPDDGVLAGYVAVIRQHLGNGQRFAWV 60
           MN   KFDLIAP  KSRDFVMQPP  +DRITFNTPDDGVLAGYV+VIRQHLGNG+RFAWV
Sbjct: 1   MNIPAKFDLIAPDSKSRDFVMQPPQSLDRITFNTPDDGVLAGYVSVIRQHLGNGERFAWV 60

Query: 61  ELDKELAGQFRGVPLADIIACDDCGAARRQAAAANDAHRLCLTDYSGTLAD 111
           ELD  L G FRGV LADI++ DDCG+ RR A        LCL D+S    +
Sbjct: 61  ELDNALPGSFRGVSLADILSSDDCGSVRRHAELNRGDRSLCLADFSNVFVE 111


>ref|XP_002537356.1| conserved hypothetical protein [Ricinus communis]
 gb|EEF25027.1| conserved hypothetical protein [Ricinus communis]
          Length = 366

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 78/99 (78%), Gaps = 1/99 (1%)

Query: 15  KSRDFVMQPPLPMDRITFNTPDDGVLAGYVAVIRQHLGNGQRFAWVELDKELAGQFRGVP 74
           K RDFV +PP P+DRITFNTPDDG+L GYV+VIRQHLGNG+RFAWVELD E AG FRGVP
Sbjct: 262 KQRDFVTEPPRPLDRITFNTPDDGMLTGYVSVIRQHLGNGERFAWVELDNEPAGMFRGVP 321

Query: 75  LADIIACDDCGAARRQAAAANDAHRLCLTDYSGTLADQL 113
           LADI+ CDD G  RR     ++A RLCL+DYS  L  ++
Sbjct: 322 LADILTCDDAGDQRRN-TPNSEARRLCLSDYSNRLRREI 359