BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0043.p         (399 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776845.1| hypothetical protein Hsero_3457 [Herbaspiril...   495   e-138
ref|YP_001863383.1| hypothetical protein Bphy_7348 [Burkholderia...   108   2e-21
ref|ZP_06842333.1| conserved hypothetical protein [Burkholderia ...   100   8e-19
ref|ZP_07892358.1| conserved hypothetical protein [Arcobacter bu...    99   1e-18
ref|YP_003456924.1| Uncharacterized protein putative lipoprotein...    69   2e-09

>ref|YP_003776845.1| hypothetical protein Hsero_3457 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64937.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 262/271 (96%), Positives = 263/271 (97%), Gaps = 2/271 (0%)

Query: 1   MLASIARWLKQWTRPIPPAAGEGSRDQLPQPQPDGGAPADWGPTVYLPGHGQMSLRKALP 60
           MLASIARWLKQWTRPIPPAAGEGSRDQLP P  DG A ADWGPTVYLPGHGQMSLRKALP
Sbjct: 14  MLASIARWLKQWTRPIPPAAGEGSRDQLPPP--DGRALADWGPTVYLPGHGQMSLRKALP 71

Query: 61  KVATMEEPALVSECIIHSSGYLRQAGIERAVRLSDTRYLPLIAMRLNDWSAAVRQAARQA 120
           KVATME+PALVSECIIHSSGYLRQAGIERAVRLSDTRYLPLIAMRLNDWSAAVRQAARQA
Sbjct: 72  KVATMEQPALVSECIIHSSGYLRQAGIERAVRLSDTRYLPLIAMRLNDWSAAVRQAARQA 131

Query: 121 LEQYRETHAAADFVPALTALHGAARGQRADHAWIAAFMQGLAAEDGPDWLLPALRARAPQ 180
           LEQYRETHAAADFVPALTALHGAARGQRADHAWIAAFMQGLAAEDGPDWLLPALRAR PQ
Sbjct: 132 LEQYRETHAAADFVPALTALHGAARGQRADHAWIAAFMQGLAAEDGPDWLLPALRARDPQ 191

Query: 181 LRRAAYVLALDHLPQRRAELVTFGLASRDLMQAHRALHALLQLDEDARLACIPLGLRSPF 240
           LRRAAY LALDHLPQRRAELVTFGLASRDLMQAHRALHALLQLDEDARLACIPLGLRSPF
Sbjct: 192 LRRAAYGLALDHLPQRRAELVTFGLASRDLMQAHRALHALLQLDEDARLACIPLGLRSPF 251

Query: 241 GQVRQFAVDHAPATLSREQLLRLLFDPMPRI 271
           GQVRQFAVDHAPA LSREQLLRLLFDPMPRI
Sbjct: 252 GQVRQFAVDHAPAALSREQLLRLLFDPMPRI 282


>ref|YP_001863383.1| hypothetical protein Bphy_7348 [Burkholderia phymatum STM815]
 gb|ACC76333.1| hypothetical protein Bphy_7348 [Burkholderia phymatum STM815]
          Length = 467

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 113/229 (49%), Gaps = 5/229 (2%)

Query: 44  TVYLPGHGQMSLRKALPKVATMEEPALVSECIIHSSGYLRQAGIERAVRLSDTRYLPLIA 103
           TVYL     M LR A+ +V    +  LV+ C  H SGY+R+A I RAV L  + +L  I 
Sbjct: 20  TVYLRPGESMPLRTAIERVFASTDKELVALCTSHYSGYVREAAIGRAVELGGSTFLRPIT 79

Query: 104 MRLNDWSAAVRQAARQALEQYRETHAAADFVPALTALHGAARGQRADH-AWIAAFMQGLA 162
            RLNDW   +R AA +AL     T  A  FVP L  L    +  R DH +W+      L 
Sbjct: 80  ERLNDWVPEIRNAAARALLTLLATFPAESFVPLLPRLRSLMQATRTDHRSWLLDIEWRLV 139

Query: 163 AEDGPDWLLPALRARAPQLRRAAYVLALDHLPQRRAELVTFGLASRDLMQAHRALHALLQ 222
              G   ++ A+      LRRAAY++A+DH      E+V  GL S D+M A RA+  +  
Sbjct: 140 QAGGTTAIVEAISGSDFHLRRAAYLVAIDHQLLPIPEIVQRGLLSGDIMLAKRAVALIDH 199

Query: 223 LDEDARLACIPLGLRSPFGQVR----QFAVDHAPATLSREQLLRLLFDP 267
           L  + R   + +   +PFG VR    +F V     + +   L R +FDP
Sbjct: 200 LPVEQRSGSMAIAAAAPFGPVRHTAFKFVVSDGVGSENEPFLWRTIFDP 248


>ref|ZP_06842333.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gb|EFG70011.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 284

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 295 DCAKKKTYAEKEICRDPFLTALDVALKENYDWMMASDIGEGAEKDLAKTQKKWIQSRNKC 354
           DCA+  +  E  +C D  L+ LD  L ++Y + MASDIG+GA KDL  TQ+ W+ SRN C
Sbjct: 22  DCARAGSRVEATVCADGRLSRLDEVLAQDYQYTMASDIGDGARKDLKATQRAWVLSRNSC 81

Query: 355 VDRECITSLYKSRIVEVC-EYPVIQGVHAIC 384
            D ECI + Y +RI +VC  YPV+ GV A C
Sbjct: 82  TDAECIRTAYAARIDQVCGSYPVLSGVSASC 112


>ref|ZP_07892358.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gb|EFU69381.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 130

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/91 (53%), Positives = 58/91 (63%), Gaps = 1/91 (1%)

Query: 295 DCAK-KKTYAEKEICRDPFLTALDVALKENYDWMMASDIGEGAEKDLAKTQKKWIQSRNK 353
           DC+K KK   E  IC D  L+  D  L ENY  M+ SDIGEGA+  L  +QKKWI  RN 
Sbjct: 33  DCSKVKKDSVEHMICTDNILSKSDEILTENYWSMLYSDIGEGAKLALKISQKKWIIKRNL 92

Query: 354 CVDRECITSLYKSRIVEVCEYPVIQGVHAIC 384
           C  ++CI   YK RI E+C+YPVI GVH IC
Sbjct: 93  CSTKDCIYEEYKQRINEICDYPVISGVHPIC 123


>ref|YP_003456924.1| Uncharacterized protein putative lipoprotein-like protein
           [Allochromatium vinosum DSM 180]
 gb|ADC64174.1| Uncharacterized protein putative lipoprotein-like protein
           [Allochromatium vinosum DSM 180]
          Length = 201

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 44/74 (59%)

Query: 295 DCAKKKTYAEKEICRDPFLTALDVALKENYDWMMASDIGEGAEKDLAKTQKKWIQSRNKC 354
           DC+K  T  E  IC+DP L ALDV L E Y  +  +  G+ A + L K+Q+ W+  RN+C
Sbjct: 29  DCSKAATLVENAICQDPELGALDVVLAEQYQAVWRATSGDSARQALKKSQRIWLAKRNQC 88

Query: 355 VDRECITSLYKSRI 368
            DR C+   Y+ R+
Sbjct: 89  QDRPCLVRAYRERL 102