BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0032.p (478 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776834.1| outer membrane efflux protein [Herbaspirillu... 946 0.0 ref|YP_004752089.1| outer membrane efflux protein [Collimonas fu... 592 e-167 ref|YP_486516.1| RND efflux system, outer membrane lipoprotein, ... 373 e-101 ref|YP_002289044.1| RND efflux system, outer membrane lipoprotei... 372 e-101 ref|YP_004109215.1| RND efflux system outer membrane lipoprotein... 372 e-100 ref|ZP_07027035.1| RND efflux system, outer membrane lipoprotein... 371 e-100 ref|NP_947914.1| RND efflux system outer membrane lipoprotein No... 370 e-100 ref|YP_532426.1| RND efflux system outer membrane lipoprotein No... 369 e-100 ref|YP_001355168.1| outer membrane efflux protein [Janthinobacte... 367 2e-99 ref|YP_569699.1| RND efflux system outer membrane lipoprotein No... 367 3e-99 >ref|YP_003776834.1| outer membrane efflux protein [Herbaspirillum seropedicae SmR1] gb|ADJ64926.1| outer membrane efflux protein [Herbaspirillum seropedicae SmR1] Length = 492 Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/478 (99%), Positives = 477/478 (99%) Query: 1 MLPAFTRVALAAVLVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDW 60 MLPAFTRVALAA LVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDW Sbjct: 15 MLPAFTRVALAAALVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDW 74 Query: 61 WKQFGSNELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPI 120 WKQFGSNELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPI Sbjct: 75 WKQFGSNELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPI 134 Query: 121 SGGTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQ 180 SGGTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQ Sbjct: 135 SGGTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQ 194 Query: 181 VLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQE 240 VLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQE Sbjct: 195 VLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQE 254 Query: 241 QDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAAANA 300 QDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAAANA Sbjct: 255 QDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAAANA 314 Query: 301 NVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQRDLA 360 NVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQRDLA Sbjct: 315 NVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQRDLA 374 Query: 361 IAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYRAG 420 IAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYRAG Sbjct: 375 IAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYRAG 434 Query: 421 AEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDSQAPGDSGTSSVS 478 AEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDSQAPGDSGTSSVS Sbjct: 435 AEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDSQAPGDSGTSSVS 492 >ref|YP_004752089.1| outer membrane efflux protein [Collimonas fungivorans Ter331] gb|AEK61266.1| outer membrane efflux protein [Collimonas fungivorans Ter331] Length = 480 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 318/471 (67%), Positives = 384/471 (81%), Gaps = 12/471 (2%) Query: 1 MLPAFTR-----VALAAVLVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLW 55 M +F+R A A+ L+L+ CA + +P +++P W A+ EQ W Sbjct: 1 MNHSFSRRWSSMAACASALLLS--ACASQIDIREPTPSVEIPQSWDLSANT----GEQDW 54 Query: 56 PDTDWWKQFGSNELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAA 115 PD+ WWK+FGS+ELS+LV QGQ +N EIAAA SRV+QAEAQARIAGAPLLP+A + Sbjct: 55 PDSGWWKRFGSDELSQLVAQGQASNLEIAAAISRVRQAEAQARIAGAPLLPNADFSTNVN 114 Query: 116 REIPI-SGGTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGI 174 R +P+ S G+ + + +++ YE+DFWGKNRAG+ AAEA+L+ANRYDRETVALTVTSGI Sbjct: 115 RAVPLASSGSAVTSTSGLVEIGYEVDFWGKNRAGLAAAEASLQANRYDRETVALTVTSGI 174 Query: 175 VSTYLQVLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIP 234 VSTYLQVLSLRDR+ IA+QNV NAERVL+LV AQSRAGSASPLDLARQRSA+A Q+ +IP Sbjct: 175 VSTYLQVLSLRDRIEIAQQNVDNAERVLKLVAAQSRAGSASPLDLARQRSAVAGQKAVIP 234 Query: 235 DLQQQEQDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEAS 294 DL+QQE++AQTALAILLGRPPQ F V E GLA+I +P+++ GLPSELL+RRPDIR AEA Sbjct: 235 DLKQQEREAQTALAILLGRPPQTFTVNEAGLAKILLPQVTPGLPSELLSRRPDIRHAEAE 294 Query: 295 LAAANANVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLR 354 LAAANANVA ARAALFPSI LTGS G QS+ALLSLF+GPN+ AN GAGL+APIFD G+L Sbjct: 295 LAAANANVANARAALFPSIRLTGSAGGQSNALLSLFNGPNMLANFGAGLVAPIFDAGRLN 354 Query: 355 GQRDLAIAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAE 414 QRDLAIAQK+ELVQ+YR VI +LSEV+ ALG IRSL+E+ +LKV E++QARFAFEL+E Sbjct: 355 SQRDLAIAQKQELVQIYRSTVIAALSEVDTALGQIRSLDEQRKLKVTEMEQARFAFELSE 414 Query: 415 IRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQD 465 IRYR GAEDL+ VLDTQR+LSE QN+LGQIKL+RL+ATVSLYKALGGGWQD Sbjct: 415 IRYRVGAEDLMTVLDTQRSLSEVQNELGQIKLKRLKATVSLYKALGGGWQD 465 >ref|YP_486516.1| RND efflux system, outer membrane lipoprotein, NodT [Rhodopseudomonas palustris HaA2] gb|ABD07605.1| RND efflux system, outer membrane lipoprotein, NodT [Rhodopseudomonas palustris HaA2] Length = 482 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/467 (46%), Positives = 296/467 (63%), Gaps = 16/467 (3%) Query: 7 RVALAAVLVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGS 66 R+ A+ VL GGC + + DP L++ P ++ AS + A P DWW+ F S Sbjct: 13 RMVAASAFVLGAGGCILTKDLPDPALDL--PPRYKS-ASLNTVDAP---PALDWWRGFRS 66 Query: 67 NELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISGGTPT 126 EL++L+E+ Q N +IAAA +R+ QA+AQARI GA LLPS N G+ + SG + Sbjct: 67 AELTQLMEEAQTVNLDIAAATARILQADAQARITGAALLPSITGN-GSGSQNKTSGSNVS 125 Query: 127 NTA---------NASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVST 177 NT +ASL SYEIDFWGKN AAE T A R+DR+ VALT + + + Sbjct: 126 NTTIAGRRYATYSASLSASYEIDFWGKNHDAALAAEETATATRFDRDVVALTTMASVANA 185 Query: 178 YLQVLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQ 237 Y QVL+ +DRL +R+N+ +A+R+L ++ + AG+ S LD+A+Q S LANQR +P LQ Sbjct: 186 YFQVLATQDRLRTSRENIASAQRILDAIKQRLAAGTGSDLDVAQQESVLANQRAAVPPLQ 245 Query: 238 QQEQDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAA 297 LA L+ RPP++ K+ L RI PR++ GLPSELLT+RPDIRR EA LA+ Sbjct: 246 LTLAQNINTLATLVSRPPESVKIVGGSLNRISSPRVTPGLPSELLTQRPDIRRQEAQLAS 305 Query: 298 ANANVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQR 357 A ANV ARA FPSI LTG G QS+ L SLF F++L AGL PIFDGG+++G Sbjct: 306 ATANVGSARAQFFPSIQLTGQGGYQSAVLASLFTPQATFSSLAAGLTQPIFDGGRIQGNF 365 Query: 358 DLAIAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRY 417 DL AQ+EEL+Q YR+ V+++ ++V+ AL +I+ ER RL+ V +R AF LAE + Sbjct: 366 DLTRAQQEELLQTYRKTVVSAFADVDNALESIKQNTERLRLQRQVVASSRRAFNLAEQQL 425 Query: 418 RAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 464 RAG D++ VL+TQ TL A++ L Q +L R A VSL++ALGGGW+ Sbjct: 426 RAGTADIVTVLNTQLTLFTAEDALIQTQLARYLAIVSLFQALGGGWE 472 >ref|YP_002289044.1| RND efflux system, outer membrane lipoprotein, NodT [Oligotropha carboxidovorans OM5] ref|YP_004632916.1| efflux transporter, outer membrane factor lipoprotein, NodT family [Oligotropha carboxidovorans OM5] gb|ACI93179.1| RND efflux system, outer membrane lipoprotein, NodT [Oligotropha carboxidovorans OM5] gb|AEI03098.1| efflux transporter, outer membrane factor lipoprotein, NodT family [Oligotropha carboxidovorans OM4] gb|AEI06675.1| efflux transporter, outer membrane factor lipoprotein, NodT family [Oligotropha carboxidovorans OM5] Length = 512 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 215/468 (45%), Positives = 295/468 (63%), Gaps = 14/468 (2%) Query: 6 TRVALAAVLVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFG 65 TRV A + + + GC M+ Q P L + +P + A+ A P DWW+ F Sbjct: 32 TRVCAAGAVAVLLAGCIMK--QDLPDLALDIPVAYQKDATPQRQDAP---PTLDWWRGFR 86 Query: 66 SNELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISG--- 122 S EL++L+E+ QR N +I AA +R+ QA+A R AGA LLP+ NA A R SG Sbjct: 87 SAELTQLMEEAQRVNLDITAATARLLQADAMTRTAGAALLPTLDANASATRSKSSSGYLN 146 Query: 123 -GT-----PTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVS 176 GT NT + SL SYEID WGKNR + AAE + A+RYDR+TVALT + + + Sbjct: 147 NGTVAARGTINTYSTSLSASYEIDLWGKNRDALLAAEESANASRYDRDTVALTAMASVAN 206 Query: 177 TYLQVLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDL 236 Y QVL+ +DR+A A +N+ +A+R+ ++A+ AG+ S LDLA+Q S LANQR +P L Sbjct: 207 AYFQVLAAQDRIATAERNIASAKRIYDAIKARVDAGTGSDLDLAQQESLLANQRAAVPPL 266 Query: 237 QQQEQDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLA 296 +Q LA L+ RPP+ + L R+ PR++ GLPSELL +RPDIRR EA LA Sbjct: 267 RQTLTQNLNILATLVARPPERVHIRGGSLGRVSAPRVTPGLPSELLIQRPDIRRQEAQLA 326 Query: 297 AANANVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQ 356 +A ANV ARA FPSI LTG G QS+AL +LF + F NL AGL PIFD G+++ Sbjct: 327 SATANVGSARAQFFPSIQLTGQGGYQSAALSALFMPQSAFFNLAAGLTQPIFDAGRIQAN 386 Query: 357 RDLAIAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIR 416 DL AQ++EL+Q YR+ VI++ S+V AL AIR +R RL+ V +R AF+L+E + Sbjct: 387 FDLTKAQQDELLQTYRKTVISAFSDVNTALDAIRQTAQRLRLQRVVVASSRRAFKLSEDQ 446 Query: 417 YRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 464 RAG D++ VL+TQ+TL +A++ L Q +L LQ+ VSL++ALGGGW+ Sbjct: 447 LRAGTADIITVLNTQQTLFQAEDTLLQAQLAWLQSYVSLFQALGGGWE 494 >ref|YP_004109215.1| RND efflux system outer membrane lipoprotein [Rhodopseudomonas palustris DX-1] gb|ADU44482.1| RND efflux system, outer membrane lipoprotein, NodT family [Rhodopseudomonas palustris DX-1] Length = 482 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/468 (45%), Positives = 301/468 (64%), Gaps = 16/468 (3%) Query: 6 TRVALAAVLVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFG 65 TR +A+ LV A GGC + + DP L++ P+++ + V P DWW+ F Sbjct: 12 TRFVVASALVAASGGCILTQDLPDPALDL--PNRYKAASRTAVEKP----PALDWWRGFR 65 Query: 66 SNELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISGGTP 125 S EL++L+E+ Q N ++AAA +R++QA+AQARI GA LLPS G ++ SG Sbjct: 66 SAELTQLMEEAQTVNLDVAAAVARIRQADAQARITGAALLPSLS-GTGNGSQVKTSGSNI 124 Query: 126 TNTANA---------SLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVS 176 +NT A SL SYEIDFWGKNR AAE T A R+DR+TV LT +G+ + Sbjct: 125 SNTTIAGRRYSTYSSSLSASYEIDFWGKNRDAALAAEETATATRFDRDTVMLTTMAGVAN 184 Query: 177 TYLQVLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDL 236 Y QVL+ +DR+ A N+++A R+L ++ + RAG+ + LD+A+Q S LANQR +P L Sbjct: 185 AYFQVLAAQDRIRTAESNIKSASRILDAIKQRLRAGTGTDLDVAQQESVLANQRAALPPL 244 Query: 237 QQQEQDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLA 296 + ALA L+ RPP++ ++ L R+ PR++ GLPS+LLT+RPDIRR EA LA Sbjct: 245 RLTLAQNVNALATLVARPPESVRIAGGSLTRLASPRVTPGLPSDLLTQRPDIRRQEAQLA 304 Query: 297 AANANVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQ 356 +A ANV ARA FP+I LT G QS+AL SLF F+N+ AGL PIFDGG+++G Sbjct: 305 SATANVGSARAQFFPTIQLTAQGGYQSAALASLFTPQATFSNIAAGLTQPIFDGGRIQGN 364 Query: 357 RDLAIAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIR 416 DL AQ+EEL+Q YR+ V+++ ++V+ AL +I+ ER RL+ V +R AF+LAE + Sbjct: 365 FDLTQAQQEELLQTYRKTVVSAFADVDNALESIKQNTERLRLQREVVASSRRAFDLAEQQ 424 Query: 417 YRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 464 RAG D++ VL+TQ TL +A++ L Q +L R QA VSL++ALGGGW+ Sbjct: 425 LRAGTSDIVTVLNTQLTLFQAEDGLIQTQLARFQAIVSLFQALGGGWE 472 >ref|ZP_07027035.1| RND efflux system, outer membrane lipoprotein, NodT family [Afipia sp. 1NLS2] gb|EFI51878.1| RND efflux system, outer membrane lipoprotein, NodT family [Afipia sp. 1NLS2] Length = 498 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/458 (46%), Positives = 288/458 (62%), Gaps = 14/458 (3%) Query: 16 LAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGSNELSELVEQ 75 L + GC +++ DP + +P + + A P DWW+ F S EL+ L+E+ Sbjct: 32 LLLPGCILKQDLPDPAFD--IPAAYQKDTTPLKQDAP---PSLDWWRGFRSPELTVLMEE 86 Query: 76 GQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISG----GT-----PT 126 QR N +IAAA +R+ QA+A AR AGA LLP+ NA A R SG GT Sbjct: 87 TQRVNLDIAAATARILQADALARTAGAALLPTLDANASATRSKSSSGFLNNGTAAARGTI 146 Query: 127 NTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQVLSLRD 186 NT + SL SYE+D W KNR + AAE T ANR+DR+TVALT + + Y QVL+ +D Sbjct: 147 NTYSTSLSASYEVDLWAKNRDALLAAEKTADANRFDRDTVALTSMVSVANAYFQVLAAQD 206 Query: 187 RLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQEQDAQTA 246 R+A A++N+ +A+R+ ++ + AG+ S LDLA+Q S LANQR +P L+Q Sbjct: 207 RIATAQRNIASAQRIYDAIKTRVDAGTGSDLDLAQQESLLANQRAAVPPLRQTLTQNINI 266 Query: 247 LAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAAANANVAVAR 306 LA L+ RPP+ ++ LARI PR++ GLPSELL +RPDIRR EA LA+A ANV AR Sbjct: 267 LATLVARPPERVHIKGGSLARISAPRVTPGLPSELLIQRPDIRRQEAQLASATANVGSAR 326 Query: 307 AALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQRDLAIAQKEE 366 A FPSI LTG G QSSAL +LF + F +L AGL PIFD G+++ DL AQ++E Sbjct: 327 AQFFPSIQLTGQGGYQSSALSALFMPQSAFFSLAAGLTQPIFDAGRIQANFDLTKAQQDE 386 Query: 367 LVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYRAGAEDLLV 426 L+Q YR+ VI++ S+V+ AL AI+ R RL+ V +R AFEL+E + +AG D++ Sbjct: 387 LLQTYRKTVISAFSDVDTALDAIKQTTNRLRLQRIVVKSSRRAFELSEKQLQAGTADIVT 446 Query: 427 VLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 464 VL+TQ+TL A++ L Q +L LQA VSL+ ALGGGW+ Sbjct: 447 VLNTQQTLFTAEDTLQQAQLAWLQAYVSLFSALGGGWE 484 >ref|NP_947914.1| RND efflux system outer membrane lipoprotein NodT [Rhodopseudomonas palustris CGA009] ref|YP_001991824.1| NodT family RND efflux system outer membrane lipoprotein [Rhodopseudomonas palustris TIE-1] emb|CAE28013.1| possible outer membrane efflux protein [Rhodopseudomonas palustris CGA009] gb|ACF01349.1| RND efflux system, outer membrane lipoprotein, NodT family [Rhodopseudomonas palustris TIE-1] Length = 482 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/467 (45%), Positives = 301/467 (64%), Gaps = 16/467 (3%) Query: 7 RVALAAVLVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGS 66 R+ +A+ LV A GGC + + DP L++ P+++ + V P DWW+ F S Sbjct: 13 RLVVASALVAASGGCILTQDLPDPALDL--PNRYKAASRTAVEKP----PALDWWRGFRS 66 Query: 67 NELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISGGTPT 126 EL++L+E+ Q N ++AAA +R++QA+AQARI GA LLPS +G ++ SG + Sbjct: 67 AELTQLMEEAQTVNLDVAAAVARIRQADAQARITGAALLPSLS-GSGNGSQVKTSGSNIS 125 Query: 127 NTANA---------SLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVST 177 NT A SL SYEIDFWGKN AAE T ANR+DR+TV LT + + + Sbjct: 126 NTTIAGRRYSTYSSSLSASYEIDFWGKNHDAALAAEETATANRFDRDTVMLTTMASVANA 185 Query: 178 YLQVLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQ 237 Y QVL+ +DR+ A N+++A R+L ++ + +AG+ + LD+A+Q S LANQR +P L+ Sbjct: 186 YFQVLAAQDRIRTAEGNIKSASRILDAIKQRLKAGTGTDLDVAQQESVLANQRAALPPLR 245 Query: 238 QQEQDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAA 297 ALA L+ RPP++ K+ L R+ PR++ GLPS+LLT+RPDIRR EA LA+ Sbjct: 246 LTLAQNVNALATLVARPPESVKIAGGSLTRLSSPRVTPGLPSDLLTQRPDIRRQEAQLAS 305 Query: 298 ANANVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQR 357 A ANV ARA FP+I LT G QS+AL SLF F+N+ AGL PIFDGG+++G Sbjct: 306 ATANVGSARAQFFPTIQLTAQGGYQSAALASLFTPQATFSNIAAGLTQPIFDGGRIQGNF 365 Query: 358 DLAIAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRY 417 DL AQ+EEL+Q YR+ V+++ ++V+ AL +I+ ER RL+ V +R AF+LAE + Sbjct: 366 DLTQAQQEELLQTYRKTVVSAFADVDNALESIKQNTERLRLQREVVASSRRAFDLAEQQL 425 Query: 418 RAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 464 RAG D++ VL+TQ TL +A++ L Q +L R QA VSL++ALGGGW+ Sbjct: 426 RAGTSDIVTVLNTQLTLFQAEDALIQTQLARFQAIVSLFQALGGGWE 472 >ref|YP_532426.1| RND efflux system outer membrane lipoprotein NodT [Rhodopseudomonas palustris BisB18] gb|ABD88107.1| RND efflux system, outer membrane lipoprotein, NodT [Rhodopseudomonas palustris BisB18] Length = 484 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 209/457 (45%), Positives = 283/457 (61%), Gaps = 16/457 (3%) Query: 18 VGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGSNELSELVEQGQ 77 VGGC + + DP LE+ G A A + P DWW+ F S EL++L+E+ Q Sbjct: 24 VGGCILTQDLPDPALEIPT------GYKAARATTVEAVPALDWWRGFRSTELTQLMEEAQ 77 Query: 78 RNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPIS----------GGTPTN 127 N +IAAA +R+ QA+AQARI G LLPS A R + GG Sbjct: 78 TVNLDIAAATARIIQADAQARITGTALLPSLTAGGSATRSKSSTASSSGTGVGLGGREIT 137 Query: 128 TANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQVLSLRDR 187 T ++SL SYEIDFW KNR AAE ANR+DR+ VALT +G+ + Y QVL+ +DR Sbjct: 138 TYSSSLSASYEIDFWSKNRDATLAAEEIANANRFDRDVVALTTAAGVANAYFQVLASQDR 197 Query: 188 LAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQEQDAQTAL 247 + A +N+ +A+R+L ++ + G+ S LD+A+Q S LANQR +P L+ AL Sbjct: 198 IRTAERNIASAQRILDAIKLRLSVGTGSDLDVAQQESVLANQRAAVPPLRLTLAQNVNAL 257 Query: 248 AILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAAANANVAVARA 307 A L+ RPP+ +V L RI PR++ GLPSELLT+RPDIRR EA LA+A ANV ARA Sbjct: 258 ATLVARPPEAVRVGGGSLDRIAAPRVTPGLPSELLTQRPDIRRQEAQLASATANVGSARA 317 Query: 308 ALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQRDLAIAQKEEL 367 FPSI LTG G QS+AL SLF F N+ AGL PIFDGG++ + A+++EL Sbjct: 318 QFFPSIQLTGQGGYQSAALASLFTPHAAFYNVAAGLTQPIFDGGRILANFEYNQARQDEL 377 Query: 368 VQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYRAGAEDLLVV 427 +Q YR+ V+++ ++V+ AL +IR ER RL+ ++ +R AF LAE + RAG D++ V Sbjct: 378 LQTYRKTVVSAFADVDNALESIRQNTERLRLQRVVLESSRRAFNLAEQQLRAGTADIVTV 437 Query: 428 LDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 464 L+TQ TL +A++ L Q +L RL A VSLY+ALGGGWQ Sbjct: 438 LNTQLTLFQAEDALSQAQLARLLAIVSLYQALGGGWQ 474 >ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] gb|ABR89418.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 367 bits (942), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 216/459 (47%), Positives = 300/459 (65%), Gaps = 10/459 (2%) Query: 10 LAAVLVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGSNEL 69 +A L+LA GCA + Q + E+ P A+ D + DWW+ FGS+EL Sbjct: 7 FSAALLLA--GCATQATQQTLVPEV-APQWRQPQANVDATGTTSVLT-RDWWRSFGSSEL 62 Query: 70 SELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISG---GTPT 126 L+E Q +Y+IAAA +RV QA+A A IAGA LLP N GA R + G GT T Sbjct: 63 DSLLETVQVQSYDIAAAVARVTQAQATATIAGAALLPELNGNFGATRNGRLGGDGNGTAT 122 Query: 127 NTA-NASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQVLSLR 185 T A L +YE+DFWG+NRA ++A A LRA +DR+TV LTVT+G+ S++LQ + LR Sbjct: 123 GTVYQAGLSATYELDFWGRNRAVRDSARAGLRAAEFDRDTVHLTVTAGVASSWLQTVGLR 182 Query: 186 DRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQQQEQDAQT 245 +R+AIA +V +A+R+L ++E+++RAG+A+PL+LA+QR LA Q + ++QQ +D+ T Sbjct: 183 ERVAIADLSVASAQRLLDVIESRARAGAANPLELAQQRGVLAAQMRARAAIRQQAEDSLT 242 Query: 246 ALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAAANANVAVA 305 LA+LLGR P + L ++Q P + AGLP++LL RRPDI RAEA L+ A+AN+ A Sbjct: 243 TLAVLLGRNPSLLVLAGTELNKLQAPAVVAGLPADLLVRRPDIARAEAQLSGADANIIAA 302 Query: 306 RAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQRDLAIAQKE 365 RAA+ P I+L G A S+ + S+FD P +L AGL APIF+ G+L RDLA+AQ+E Sbjct: 303 RAAMLPRISLGGDITAGSNRVSSVFDNP--VYSLAAGLAAPIFNAGRLAAGRDLALAQRE 360 Query: 366 ELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRYRAGAEDLL 425 EL+ YR+ ++ + +VE AL A+ ++ + + E+ QA+ AF LAE RYRAGAE L Sbjct: 361 ELLANYRRAIVAAFGDVEVALNAVAGIDAQRIAQEEELRQAQRAFNLAESRYRAGAETSL 420 Query: 426 VVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 464 +LD QRTL AQ+ Q++ RLQA VSLYKALGGGWQ Sbjct: 421 TLLDAQRTLYAAQDAAAQLRTLRLQAAVSLYKALGGGWQ 459 >ref|YP_569699.1| RND efflux system outer membrane lipoprotein NodT [Rhodopseudomonas palustris BisB5] gb|ABE39798.1| RND efflux system, outer membrane lipoprotein, NodT [Rhodopseudomonas palustris BisB5] Length = 482 Score = 367 bits (942), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 213/467 (45%), Positives = 293/467 (62%), Gaps = 16/467 (3%) Query: 7 RVALAAVLVLAVGGCAMREVQTDPILEMQVPDKWGGGASADVAHAEQLWPDTDWWKQFGS 66 R+ A+ LV+ GGC + + DP L++ P ++ A P DWW+ F S Sbjct: 13 RMVAASALVVGAGGCILTKDLPDPALDL--PPRYKAAALTTTDAP----PALDWWRGFRS 66 Query: 67 NELSELVEQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISGGTPT 126 EL++L+E+ Q N +IAAA SR+ QA+AQARI GA LLPS N+ ++ SG + Sbjct: 67 PELTQLMEEAQTVNLDIAAATSRILQADAQARITGAALLPSLTGNSSGSQN-KTSGSNVS 125 Query: 127 NTA---------NASLQVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVST 177 NT ASL SYEIDFWGKNR AAE T ANR+DR+ VALT + + + Sbjct: 126 NTTIAGRRFSTYAASLSASYEIDFWGKNRDAALAAEETATANRFDRDVVALTTMASVANA 185 Query: 178 YLQVLSLRDRLAIARQNVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDLQ 237 Y QVL+ +DR+ A++N+ +A+R+L ++ + AG+ S LD+A+Q S LANQR +P L+ Sbjct: 186 YFQVLASQDRIRTAQENIASAQRILDAIKQRLAAGTGSDLDVAQQESVLANQRAAVPLLR 245 Query: 238 QQEQDAQTALAILLGRPPQNFKVEEKGLARIQMPRISAGLPSELLTRRPDIRRAEASLAA 297 LA L+ RPP+ K+ L R+ P ++ G+PSELLT+RPDIRR EA LAA Sbjct: 246 VTLAQNINTLATLVSRPPEAVKILGGSLNRLSSPLVTPGMPSELLTQRPDIRRQEAQLAA 305 Query: 298 ANANVAVARAALFPSITLTGSTGAQSSALLSLFDGPNLFANLGAGLIAPIFDGGKLRGQR 357 A ANV ARA FPSI LTG G QS+ L SLF F+NL AGL PIFDGG++ G Sbjct: 306 ATANVGSARAQFFPSIQLTGQGGYQSAVLASLFTPQATFSNLAAGLTQPIFDGGRISGNF 365 Query: 358 DLAIAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIRY 417 DL AQ++EL+Q YR+ V+++ ++V+ AL +I+ ER RL+ V +R AF LAE + Sbjct: 366 DLTKAQQDELLQTYRKTVVSAFADVDNALESIKQNTERLRLQRQVVASSRRAFSLAEQQL 425 Query: 418 RAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 464 RAG D++ VL+TQ TL +A++ L Q +L R A VSL++ALGGGW+ Sbjct: 426 RAGTADIVTVLNTQLTLFQAEDSLIQTQLARYLAIVSLFQALGGGWE 472