BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0026.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776829.1| transcription regulator protein [Herbaspiril... 459 e-127 ref|YP_999413.1| GntR family transcriptional regulator [Verminep... 235 5e-60 ref|YP_004487964.1| GntR family transcriptional regulator [Delft... 214 1e-53 ref|YP_001565270.1| GntR family transcriptional regulator [Delft... 213 2e-53 ref|ZP_08274038.1| Transcriptional regulator, GntR family [Oxalo... 204 8e-51 ref|YP_002498909.1| GntR family transcriptional regulator [Methy... 203 2e-50 ref|YP_001415346.1| GntR family transcriptional regulator [Xanth... 200 1e-49 ref|YP_001167755.1| GntR family transcriptional regulator [Rhodo... 197 2e-48 ref|YP_001748577.1| GntR family transcriptional regulator [Pseud... 195 4e-48 ref|YP_724554.1| GntR family transcriptional regulator [Ralstoni... 187 1e-45 >ref|YP_003776829.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64921.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 232/234 (99%), Positives = 233/234 (99%) Query: 13 MDPTLIADLSTMRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVR 72 MDPTLIADLSTMRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALG SPMPVR Sbjct: 1 MDPTLIADLSTMRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVR 60 Query: 73 EAVRQLAAEGALEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQV 132 EAVRQLAAEGALEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDA+GLEQV Sbjct: 61 EAVRQLAAEGALEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQV 120 Query: 133 ARLHDTLSVEMKRKRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDL 192 ARLHDTLSVEMKRKRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDL Sbjct: 121 ARLHDTLSVEMKRKRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDL 180 Query: 193 RAGSRRLAEAPALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 246 RAGSRRLAEAPALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD Sbjct: 181 RAGSRRLAEAPALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 234 >ref|YP_999413.1| GntR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM60395.1| transcriptional regulator, GntR family [Verminephrobacter eiseniae EF01-2] Length = 224 Score = 235 bits (599), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 118/221 (53%), Positives = 164/221 (74%) Query: 24 MRKIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGA 83 M+ + H TLS RVY+DL E I +GQV+PG++LTL G+A ALG S MP+REAV++LAAEGA Sbjct: 1 MQPLVHLTLSARVYEDLRERIISGQVQPGERLTLAGMASALGTSAMPIREAVQKLAAEGA 60 Query: 84 LEILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEM 143 LEILPN+++ VP+MT+ +F+EL+ IR+A+EGLA++ AA I L ++A L E Sbjct: 61 LEILPNKSVGVPVMTRTRFQELVTIRIAVEGLAVQTAASLITDAQLARLAELEKAFRTER 120 Query: 144 KRKRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAP 203 + P+V+ +I++NKQ HF AY+ +GMPTL+ LI GLWL++GPV+NLD+R GS RLA P Sbjct: 121 RLATPDVNRIIQINKQFHFGAYEAAGMPTLLTLIEGLWLRIGPVLNLDIRNGSSRLANPP 180 Query: 204 ALVHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGL 244 ++ H +L+GLRA AR GL D+ AA++IL+GDGL Sbjct: 181 SVRAHRAMLDGLRAHDGLAARNGLAMDIQCAADVILSGDGL 221 >ref|YP_004487964.1| GntR family transcriptional regulator [Delftia sp. Cs1-4] gb|AEF89609.1| transcriptional regulator, GntR family [Delftia sp. Cs1-4] Length = 251 Score = 214 bits (545), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 107/215 (49%), Positives = 148/215 (68%) Query: 27 IQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGALEI 86 ++ TLS VY L EL+ GQ+ PG++++L+ A ALG+S MPVREAV +L AE ALE+ Sbjct: 10 LKRQTLSSDVYAQLRELLITGQMIPGEQISLRTTASALGVSVMPVREAVHRLVAEQALEL 69 Query: 87 LPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEMKRK 146 PNRA+RVPLMT+ FRE+ +IR+ LEGLA E AAR + A LE++A L D + EM Sbjct: 70 TPNRALRVPLMTESAFREITRIRVNLEGLATEQAARQLPAAELERIAALQDRFAAEMASA 129 Query: 147 RPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALV 206 P+ +I NK HFA Y +GMP L+ +I LWL++GP++N D+R+GSRR++E A+ Sbjct: 130 SPDGARLIAFNKDFHFAVYSAAGMPMLLQMIEALWLRIGPILNHDMRSGSRRVSEQVAVG 189 Query: 207 HHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAG 241 HHARL+E LR G A+ L GD+ SAA+ I++ Sbjct: 190 HHARLVEALRRGDAPAAKEALRGDIESAADYIVSA 224 >ref|YP_001565270.1| GntR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX36885.1| transcriptional regulator, GntR family [Delftia acidovorans SPH-1] Length = 251 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 107/215 (49%), Positives = 148/215 (68%) Query: 27 IQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGALEI 86 ++ TLS VY L EL+ GQ+ PG++++L+ A ALG+S MPVREAV +L AE ALE+ Sbjct: 10 LKRQTLSSDVYAQLRELLITGQMIPGEQISLRTTASALGVSVMPVREAVHRLVAEQALEL 69 Query: 87 LPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEMKRK 146 PNRA+RVPLMT+ FRE+ +IR+ LEGLA E AAR + A LE++A L D + EM Sbjct: 70 TPNRALRVPLMTESAFREITRIRVNLEGLATEQAARQLPAAELERIAALQDRFAAEMASA 129 Query: 147 RPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALV 206 P+ +I NK HFA Y +GMP L+ +I LWL++GP++N D+R+GSRR++E A+ Sbjct: 130 VPDGARLIAFNKDFHFAVYSAAGMPMLLQMIEALWLRIGPILNHDMRSGSRRVSEQVAVG 189 Query: 207 HHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAG 241 HHARL+E LR G A+ L GD+ SAA+ I++ Sbjct: 190 HHARLVEALRRGDAPAAKEALRGDIESAADYIVSA 224 >ref|ZP_08274038.1| Transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF32485.1| Transcriptional regulator, GntR family [Oxalobacteraceae bacterium IMCC9480] Length = 237 Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 100/211 (47%), Positives = 146/211 (69%) Query: 31 TLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGALEILPNR 90 T+S VY+ EL+ G++ PG++L+L+ +A ALG+S MPVREA+++L AE ALE+ PNR Sbjct: 14 TISADVYEQFKELLMTGRMMPGEQLSLRTVAAALGVSVMPVREAMQRLVAEQALELSPNR 73 Query: 91 AMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEMKRKRPNV 150 AMRVP MT +FRE+ IR+ LEG+A E AA+ + L ++ +L++ EM PN Sbjct: 74 AMRVPTMTVSQFREITSIRINLEGVATERAAKSLSEAELRRIVQLNEDFFEEMASASPNG 133 Query: 151 DLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALVHHAR 210 +I LNK+ HFA Y+GS MP L+ LI LW+++GP++N DLRAGS R+ E A+ HH++ Sbjct: 134 ARLITLNKEFHFAVYEGSRMPMLLQLIKALWVRIGPILNHDLRAGSARINERVAVSHHSQ 193 Query: 211 LLEGLRAGSPEKARAGLEGDLLSAAEMILAG 241 L++ LR E AR L+GD+ SAA+ I++ Sbjct: 194 LVDALRRRDSEAARIALQGDIDSAAQFIISA 224 >ref|YP_002498909.1| GntR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL58606.1| transcriptional regulator, GntR family [Methylobacterium nodulans ORS 2060] Length = 234 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 106/221 (47%), Positives = 145/221 (65%) Query: 26 KIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGALE 85 +++ ATL ERVY +L L+ AG++ PG++L+L+ +AD LG S MPVREAV +LAA+ ALE Sbjct: 10 RMERATLGERVYAELRALLIAGELAPGERLSLRRVADQLGTSMMPVREAVSRLAADDALE 69 Query: 86 ILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEMKR 145 +LPNR++RVPLM G+FREL ++R+A+EG A E AAR L +A E Sbjct: 70 VLPNRSVRVPLMNAGQFRELTRVRIAIEGFAAEEAARLRGEADLAAIAAHDAVFRAEAHA 129 Query: 146 KRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPAL 205 + P+ + +R NK LHFA Y + +PTLV +I GLWL+VGPV+NLD+R +RLAE A Sbjct: 130 ENPDFERAVRANKDLHFAVYAATQLPTLVSIIEGLWLRVGPVLNLDMRVSGQRLAEGTAE 189 Query: 206 VHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 246 HHARL+ +R + ARA L D+ AA I LP+ Sbjct: 190 RHHARLVAAIRERNGPSARAALVADIEEAARFIAGSGRLPE 230 >ref|YP_001415346.1| GntR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS65689.1| transcriptional regulator, GntR family [Xanthobacter autotrophicus Py2] Length = 249 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 103/221 (46%), Positives = 144/221 (65%) Query: 26 KIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGALE 85 +I TL+++VY DL E++ +G+ PG++ TL+GLA A+G S MPVREAV +L AE ALE Sbjct: 29 RIVRQTLADQVYGDLKEILLSGRAAPGERFTLRGLAGAIGTSAMPVREAVSRLVAENALE 88 Query: 86 ILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEMKR 145 +LPNRA+RVPLM + +F+EL IR +LEGLA E A R + +V R + E + Sbjct: 89 VLPNRAVRVPLMPRARFQELRLIRCSLEGLATEIAVREASDAEIAEVERFERLFAAERDK 148 Query: 146 KRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPAL 205 +P+ +R NK LHFA Y+ + +P L +I GLWLQ+GPV+NLD RAG R+ + A Sbjct: 149 PQPDGAEAMRHNKDLHFALYRAAHLPALFQMIEGLWLQIGPVLNLDFRAGPERVRQGEAH 208 Query: 206 VHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 246 + HA ++ L+A P AR L D+ SA + IL+ D LPD Sbjct: 209 IRHAAMVAALKARDPAAARTALVADIWSAGDFILSRDVLPD 249 >ref|YP_001167755.1| GntR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gb|ABP70450.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/221 (45%), Positives = 142/221 (64%), Gaps = 1/221 (0%) Query: 26 KIQHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGALE 85 +I+ T+ ER+Y +LC+L+ AG+++PG++L+L+ +A+ALG+S MPVREAV +L A+GAL Sbjct: 18 QIERVTMGERIYNELCQLLIAGKLQPGERLSLRTVAEALGVSMMPVREAVARLVADGALT 77 Query: 86 ILPNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEMKR 145 + NRA+ VPLMT K REL +IR+ +EG A+ AA A L + RL Sbjct: 78 VHANRAITVPLMTVAKLRELTRIRIEIEGYAVAEAATRCTAGQLATIGRLDAAFRQATLA 137 Query: 146 KRPNVDLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPAL 205 D +RLNK+LHFA Y+ +G P L+ +I GLWL+VGP+ NLDLRA +RR + A Sbjct: 138 PEGGSDDSLRLNKELHFAIYEAAGSPVLLSIIEGLWLKVGPIFNLDLRA-ARRFSTGAAE 196 Query: 206 VHHARLLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGLPD 246 HHA L+ L PE AR L D+LS+ E ++ LPD Sbjct: 197 KHHAALVAALTRQDPEGARQALSADILSSLEFVVTTGSLPD 237 >ref|YP_001748577.1| GntR family transcriptional regulator [Pseudomonas putida W619] gb|ACA72208.1| transcriptional regulator, GntR family [Pseudomonas putida W619] Length = 239 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 96/214 (44%), Positives = 140/214 (65%) Query: 31 TLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGALEILPNR 90 TLS VY L +L+ +G+V PG+KL+L+ +ADALG+S MPVREAV +L AE ALE+ NR Sbjct: 14 TLSADVYTQLRDLLISGRVMPGEKLSLRSIADALGVSVMPVREAVHRLVAEQALEMAANR 73 Query: 91 AMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEMKRKRPNV 150 +RVP++T +FRE+ IRL LEG A AA +D+ L ++ ++H+ E + P+ Sbjct: 74 YIRVPVLTISQFREITSIRLNLEGQAAARAAELVDSQALAEIEKIHEAFCAEFAKGAPDE 133 Query: 151 DLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALVHHAR 210 +I LNK+LHFA Y + MP L+ ++ LWL++GP+IN DLR+G+ R+ + HHA Sbjct: 134 SRLITLNKELHFAIYNQADMPILLQIVESLWLRIGPIINYDLRSGTERVVQRVQASHHAA 193 Query: 211 LLEGLRAGSPEKARAGLEGDLLSAAEMILAGDGL 244 +++ L+ G AR L+ D+ SAAE IL L Sbjct: 194 MVDALKKGDSVAARESLQDDIKSAAEFILNTGAL 227 >ref|YP_724554.1| GntR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ91186.1| transcriptional regulator, GntR-family [Ralstonia eutropha H16] Length = 260 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/211 (46%), Positives = 137/211 (64%) Query: 31 TLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGISPMPVREAVRQLAAEGALEILPNR 90 TLS VY L +L+ +GQ+ PG++++L+ +A ALG+S MPVREAV +L AE ALE+ PNR Sbjct: 18 TLSRDVYTQLRDLLISGQMMPGEQISLRNIAAALGVSVMPVREAVHRLVAEQALELTPNR 77 Query: 91 AMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAMGLEQVARLHDTLSVEMKRKRPNV 150 A+RVP M+ +F E+ KIR+ LEGLA AA I L+QV LH + EM ++ P+ Sbjct: 78 ALRVPRMSVSQFEEITKIRIELEGLATATAAERITDEELKQVQALHRRFADEMSKRSPDG 137 Query: 151 DLVIRLNKQLHFAAYQGSGMPTLVDLIAGLWLQVGPVINLDLRAGSRRLAEAPALVHHAR 210 VI N+ HFA Y + MP L+ +I WL++GP++N DLR+GSRR+ E A+ HH Sbjct: 138 ADVIAANQAFHFAVYAAARMPILLQMIESQWLRIGPILNHDLRSGSRRVEERVAVKHHDN 197 Query: 211 LLEGLRAGSPEKARAGLEGDLLSAAEMILAG 241 L+E LR A A L GD+ SAA I++ Sbjct: 198 LIEALRRHDSAAACAALRGDIESAAAYIVSA 228